Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007730

Physical Location & Seq

Genomic Coordinates Forward (+)

5034575 .. 5037449

Gene Structure 2875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031424

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGGTTTGTTTAGGCTGTGGTGGAATGGAAGTGCGGTAGGGTTTCTTCTATTGGTGCCAGGAATTCTGGGTTGGGGCAAAGAAGGCCATTATGCAGTTTGCAAGATAGCAGAGGGATTTCTGAGTGAAGATGCTTTAGCTGCAGTGAAAGAATTGCTACCGGAATCTGCTGGAGGTGAACTTGCTGCAGTTTGCTCGTGGCCTGATGAGATTCGCTTTCATTATCATTGGAGTAGTGCTTTACACTATGTTGACACACCCGATTTTCTGTGTAACTACAATTACGGCAGAGACTGCCATGACTCTGCTGGACATAAAGGGAGATGTGTAACTGCAGCAATATACAACTATACGATGCAACTTTCGACTTATCAGGATTCCATCTCAAAATCAAAATACAACTTAACGGAGGCACTTCTTTTCTTGTCTCACTTTATTGGGGATGTCCATCAGCCCCTACATGTTGGTTTCACTGGAGATCTAGGGGGGAACACAATAATAGTCCGTTGGTATGCTGCTGAAAGCATTCGTTTAGCATGCAAATTTGCTTACAGGAATGCCACTCCAGGAAGCACTCTGGATGATGATTACTTTCTTTCTCGGCTACCAGTCGTGGAGAAGCGGCTAGCTCAAAGTGGGGTTCGCTTGGCTGCTACCCTCAACCATATCTTCTCTTCTGAACCAAAAATTGCTGAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000014 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005576 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043765 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

S1-P1_nuclease

Protein Analysis

234

Amino Acids

25.83

Weight (kDa)

6.04

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S1-P1_nuclease	PF02265	25 - 173	4e-46	S1/P1 Nuclease
S1-P1_nuclease	PF02265	171 - 224	3.9e-14	S1/P1 Nuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21585 AT4G21585 AT4G21585 AT4G21585 AT4G21585 AT4G21585 AT4G21590 AT4G21590 AT4G21600
fragaria_vesca	FvH4_3g04350 FvH4_3g04350
malus_domestica	MD05G1323700.v1.1
prunus_persica	Prupe.4G038800_v2.0.a1
pyrus_communis	pycom05g29810
rosa_chinensis	RchiOBHm_Chr5g0006741
rosa_laevigata	RLG00000031424
rosa_multiflora	Rmu_sc0017347.1_g000006 Rmu_sc0018387.1_g000005
rosa_rugosa	Rorug04G0424100
rosa_samantha	Rh5AG052000 Rh5BG050900 Rh5CG059500 Rh5DG050000
rosa_wichuraiana	Rw5G005250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	55
AciI	CCGC	2 cut(s)	35, 622
AcsI	RAATTY	2 cut(s)	63, 542
AflIII	ACRYGT	1 cut(s)	460
AjnI	CCWGG	2 cut(s)	58, 565
AjuI	GAANNNNNNNTTGG	2 cut(s)	55, 87
AluBI	AGCT	2 cut(s)	140, 629
AluI	AGCT	2 cut(s)	140, 629
Alw26I	GTCTC	2 cut(s)	285, 432
AlwNI	CAGNNNCTG	1 cut(s)	294
AoxI	GGCC	2 cut(s)	85, 200
ApeKI	GCWGC	5 cut(s)	140, 185, 335, 515, 650
ApoI	RAATTY	2 cut(s)	63, 542
Asp700I	GAANNNNTTC	1 cut(s)	525
AsuHPI	GGTGA	1 cut(s)	188
AsuNHI	GCTAGC	1 cut(s)	625
BanI	GGYRCC	1 cut(s)	55
BarI	GAAGNNNNNNTAC	2 cut(s)	30, 62
BauI	CACGAG	1 cut(s)	196
BbvI	GCAGC	5 cut(s)	127, 172, 347, 502, 637
BccI	CCATC	2 cut(s)	389, 456
BceAI	ACGGC	1 cut(s)	301
BcgI	CGANNNNNNTGC	2 cut(s)	177, 211
BciT130I	CCWGG	2 cut(s)	60, 567
BcoDI	GTCTC	2 cut(s)	285, 432
BfaI	CTAG	2 cut(s)	482, 626
BfmI	CTRYAG	3 cut(s)	141, 186, 333
BglII	AGATCT	1 cut(s)	478
BisI	GCNGC	6 cut(s)	141, 186, 336, 516, 623, 651
BlsI	GCNGC	6 cut(s)	142, 187, 337, 517, 624, 652
Bme1390I	CCNGG	2 cut(s)	60, 567
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	2 cut(s)	60, 567
BmsI	GCATC	2 cut(s)	121, 345
BmtI	GCTAGC	1 cut(s)	629
BpmI	CTGGAG	3 cut(s)	192, 495, 549
BsaBI	GATNNNNATC	1 cut(s)	447
BsaWI	WCCGGW	1 cut(s)	160
Bse1I	ACTGG	2 cut(s)	478, 608
Bse8I	GATNNNNATC	1 cut(s)	447
BseBI	CCWGG	2 cut(s)	60, 567
BseGI	GGATG	2 cut(s)	448, 586
BseJI	GATNNNNATC	1 cut(s)	447
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	2 cut(s)	478, 608
BseXI	GCAGC	5 cut(s)	127, 172, 347, 502, 637
BshFI	GGCC	2 cut(s)	87, 202
BshNI	GGYRCC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	161
BsmAI	GTCTC	2 cut(s)	285, 432
BsmI	GAATGC	2 cut(s)	525, 562
BsnI	GGCC	2 cut(s)	87, 202
Bsp143I	GATC	1 cut(s)	478
BspACI	CCGC	2 cut(s)	35, 622
BspANI	GGCC	2 cut(s)	87, 202
BspCNI	CTCAG	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	57
BspMAI	CTGCAG	3 cut(s)	145, 190, 337
BspOI	GCTAGC	1 cut(s)	629
BspT107I	GGYRCC	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	478, 608
BssMI	GATC	1 cut(s)	478
BssSI	CACGAG	1 cut(s)	196
Bst2BI	CACGAG	1 cut(s)	196
Bst2UI	CCWGG	2 cut(s)	60, 567
Bst6I	CTCTTC	1 cut(s)	679
BstAPI	GCANNNNNTGC	1 cut(s)	294
BstC8I	GCNNGC	2 cut(s)	538, 627
BstDEI	CTNAG	1 cut(s)	122
BstF5I	GGATG	2 cut(s)	448, 586
BstKTI	GATC	1 cut(s)	481
BstMAI	GTCTC	2 cut(s)	285, 432
BstMBI	GATC	1 cut(s)	478
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 140, 294
BstNI	CCWGG	2 cut(s)	60, 567
BstNSI	RCATGY	2 cut(s)	464, 540
BstSCI	CCNGG	2 cut(s)	58, 565
BstSFI	CTRYAG	3 cut(s)	141, 186, 333
BstV1I	GCAGC	5 cut(s)	127, 172, 347, 502, 637
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
BsuRI	GGCC	2 cut(s)	87, 202
BtsCI	GGATG	2 cut(s)	448, 586
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	150, 471
Cac8I	GCNNGC	2 cut(s)	538, 627
CaiI	CAGNNNCTG	1 cut(s)	294
CviAII	CATG	4 cut(s)	299, 461, 537, 699
CviJI	RGCY	9 cut(s)	16, 87, 140, 202, 454, 604, 625, 629, 650
CviKI_1	RGCY	9 cut(s)	16, 87, 140, 202, 454, 604, 625, 629, 650
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	1 cut(s)	480
DpnII	GATC	1 cut(s)	478
Eam1104I	CTCTTC	1 cut(s)	679
EarI	CTCTTC	1 cut(s)	679
EcoRI	GAATTC	1 cut(s)	63
EcoRII	CCWGG	2 cut(s)	58, 565
FaeI	CATG	4 cut(s)	302, 464, 540, 702
FatI	CATG	4 cut(s)	298, 460, 536, 698
Fnu4HI	GCNGC	6 cut(s)	141, 186, 336, 516, 623, 651
FokI	GGATG	2 cut(s)	455, 593
Fsp4HI	GCNGC	6 cut(s)	141, 186, 336, 516, 623, 651
FspBI	CTAG	2 cut(s)	482, 626
GluI	GCNGC	6 cut(s)	141, 186, 336, 516, 623, 651
GsuI	CTGGAG	3 cut(s)	192, 495, 549
HaeIII	GGCC	2 cut(s)	87, 202
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	4 cut(s)	302, 464, 540, 702
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	4 cut(s)	164, 211, 302, 377
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	2 cut(s)	179, 253
Hpy188I	TCNGA	2 cut(s)	123, 679
Hpy188III	TCNNGA	2 cut(s)	374, 578
Hpy8I	GTNNAC	2 cut(s)	179, 253
HpyAV	CCTTC	1 cut(s)	77
HpyCH4V	TGCA	7 cut(s)	95, 102, 143, 188, 335, 358, 540
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 140, 294
HpyF3I	CTNAG	1 cut(s)	122
Hsp92II	CATG	4 cut(s)	302, 464, 540, 702
Kzo9I	GATC	1 cut(s)	478
Lsp1109I	GCAGC	5 cut(s)	127, 172, 347, 502, 637
LweI	GCATC	2 cut(s)	121, 345
MaeI	CTAG	2 cut(s)	482, 626
MaeIII	GTNAC	2 cut(s)	272, 328
MalI	GATC	1 cut(s)	480
MboI	GATC	1 cut(s)	478
MboII	GAAGA	4 cut(s)	38, 140, 661, 666
MflI	RGATCY	1 cut(s)	478
MluCI	AATT	5 cut(s)	63, 152, 280, 542, 687
MlyI	GAGTC	1 cut(s)	296
MnlI	CCTC	4 cut(s)	106, 167, 403, 668
MroXI	GAANNNNTTC	1 cut(s)	525
MseI	TTAA	1 cut(s)	404
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	2 cut(s)	60, 567
Mva1269I	GAATGC	2 cut(s)	525, 562
MvaI	CCWGG	2 cut(s)	60, 567
MwoI	GCNNNNNNNGC	3 cut(s)	84, 140, 294
NdeII	GATC	1 cut(s)	478
NheI	GCTAGC	1 cut(s)	625
NlaIII	CATG	4 cut(s)	302, 464, 540, 702
NlaIV	GGNNCC	1 cut(s)	57
NmeAIII	GCCGAG	1 cut(s)	580
NspI	RCATGY	2 cut(s)	464, 540
PaeI	GCATGC	1 cut(s)	540
PciI	ACATGT	1 cut(s)	460
PctI	GAATGC	2 cut(s)	525, 562
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	3 cut(s)	164, 211, 377
PfoI	TCCNGGA	1 cut(s)	565
PkrI	GCNGC	6 cut(s)	142, 187, 337, 517, 624, 652
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
PscI	ACATGT	1 cut(s)	460
Psp6I	CCWGG	2 cut(s)	58, 565
PspGI	CCWGG	2 cut(s)	58, 565
PspN4I	GGNNCC	1 cut(s)	57
PstI	CTGCAG	3 cut(s)	145, 190, 337
PstNI	CAGNNNCTG	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	478
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	6 cut(s)	141, 186, 336, 516, 623, 651
Sau3AI	GATC	1 cut(s)	478
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	2 cut(s)	60, 567
SetI	ASST	3 cut(s)	142, 178, 631
SfaNI	GCATC	2 cut(s)	121, 345
SfcI	CTRYAG	3 cut(s)	141, 186, 333
SphI	GCATGC	1 cut(s)	540
Sse9I	AATT	5 cut(s)	63, 152, 280, 542, 687
SsiI	CCGC	2 cut(s)	35, 622
SspMI	CTAG	2 cut(s)	482, 626
StyD4I	CCNGG	2 cut(s)	58, 565
TaqI	TCGA	1 cut(s)	365
TasI	AATT	5 cut(s)	63, 152, 280, 542, 687
TauI	GCSGC	1 cut(s)	625
TfiI	GAWTC	3 cut(s)	164, 211, 377
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TscAI	CASTG	2 cut(s)	150, 478
TseI	GCWGC	5 cut(s)	140, 185, 335, 515, 650
TspDTI	ATGAA	1 cut(s)	209
TspGWI	ACGGA	2 cut(s)	422, 494
TspRI	CASTG	2 cut(s)	150, 478
XapI	RAATTY	2 cut(s)	63, 542
XceI	RCATGY	2 cut(s)	464, 540
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	2 cut(s)	482, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.