Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006563

Physical Location & Seq

Genomic Coordinates Forward (+)

5655537 .. 5659019

Gene Structure 3483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G108200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGACGTGCCTCCTTATTGTAAGCACTTCAGAGTATTCGGTTGCCACTTGAATTCCTTTGCATGCAAATGTGTTGTTTTAGCTTTCATTGCTCTGATTCTCAGAGCTGTTCTGCTTCCTACGTTCCATAATTTTGGTGGAGCTGAACAGAGCAAGTTGGTCTTCATCAGTAACCTCTCTTTGTCACTCGGTCAGAAATTCGGAATTAGAAAAGATAAGTTTCTGGAGGTTCCTCAAATTGTATGGGGCTTAAACAATCAAAAGATTGCGTTTGCAAGAGCTTGTTTAACTGCAAGGTTTCTGAACCGGACTCTTTTGATGCCCAGCTTGAGTGCTTCCCTGTTCTACAAAGAAGTCGAGCTCTTGGAGCCTATTTCCTTTGATAAGGTGTTCCAGTTCAAGAAGTTTAATTCTCTCTGTAATGGCTTTGTTCAACTGGGCGAGTTCTCGGATCTTAGAAACCGAACGGAAGCCTTTGAGCTTCAGAAAGGAAGTGGAAGGAGGTGGACACCTGAGAGAGATTTGTATCAGTTGAAACAGCACAATGAGGATCCATATAATGAGTTTGAGGTCATTCGAATCATTGGAAAGAACCCGTTTCTGTGGCACGATCATTGGCCTGTGAAGGACTATGCGAAGGTATTTGAGTGCTTGGTTCTGGTTGATGAGATAATGAATGAAGTAGATAAAGTTGTGTCCAGGATTAGAGAGATAGGAGCAGCACAAGTAAGAAGCCAGAATGAGTCTCCACAAAATGGCATTAACCGGGCAGAGAAGCCTCTCTTGCAGCCAGTGCCTTATGTGGCTGTACACATGAGGATAGAGATAGACTGGATGATTCATTGTAAGAAGCTAGAGCAAAGATCAAACATAAGTCAAATTTGTAGCAGCAAGGAGGAGATCATGGAGAGAGTGGGCAACATTGCTGGCCTGAAAACACCGGTCGTTGTTTATTTAGCTGTGGCTGATAGTCTTCTTCATGATCCATCTATATTGAGTGGCTGGAAGGAAGGCTTGATTCCTTATGAGAAGAAGAAATTGGGGTTTGAAGGGACTTACAAGAAGTTCCCTTATCTCATTCAGTCTGCAATCGACTATGAAGTGTGTTCAAGGGCTGATGTCTTTGTGGGAAACAGTTTCTCCACATTTTCGAACCTTATAGTTCTCGATCGAACGCAGAAGCTCATTAGAATGGGCGTCACAAGCTCTTGTGGTGTGGATGTAAGGTGGCCTTCTTATGCATACAACATATTAGGGGAAGCAAAAGGCCCTCAAAGATGGATGACAAACATGTCTGGCTCAAGTCTTCAAGCAATTAGCTATGGCTCCAATGACATTTCGTGTTGTGTTGATCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

453

Amino Acids

51.52

Weight (kDa)

8.66

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05320 AT3G05320 AT3G05320
fragaria_vesca	FvH4_3g11981
malus_domestica	MD05G1256000.v1.1 MD10G1236200.v1.1
prunus_persica	Prupe.4G108200_v2.0.a1 Prupe.4G108200_v2.0.a1 Prupe.4G108200_v2.0.a1 Prupe.4G108200_v2.0.a1
pyrus_communis	pycom10g19760
rosa_chinensis	RchiOBHm_Chr5g0019591 RchiOBHm_Chr5g0019601 RchiOBHm_Chr5g0019611
rosa_laevigata	RLG00000019254 RLG00000032459
rosa_multiflora	Rmu_sc0002759.1_g000066
rosa_roxburghii	Rroxscaffold_1G00058470 Rroxscaffold_1G00058480
rosa_rugosa	Rorug05G0052300
rosa_samantha	Rh5AG142900 Rh5BG141400 Rh5BG141500 Rh5CG153400 Rh5DG142000
rosa_wichuraiana	Rw5G012640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1291
AccB7I	CCANNNNNTGG	1 cut(s)	755
AclWI	GGATC	4 cut(s)	459, 545, 558, 977
AcsI	RAATTY	3 cut(s)	52, 197, 879
AcuI	CTGAAG	2 cut(s)	13, 467
AcyI	GRCGYC	1 cut(s)	1197
AfaI	GTAC	1 cut(s)	810
AfiI	CCNNNNNNNGG	1 cut(s)	755
AflIII	ACRYGT	1 cut(s)	1290
AgeI	ACCGGT	1 cut(s)	940
AgsI	TTSAA	7 cut(s)	52, 400, 434, 535, 1049, 1110, 1310
AjiI	CACGTC	1 cut(s)	7
AjnI	CCWGG	1 cut(s)	698
AjuI	GAANNNNNNNTTGG	2 cut(s)	1022, 1054
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	1 cut(s)	750
AlwI	GGATC	4 cut(s)	459, 545, 558, 977
AoxI	GGCC	4 cut(s)	617, 928, 1229, 1267
ApeKI	GCWGC	3 cut(s)	719, 787, 888
ApoI	RAATTY	3 cut(s)	52, 197, 879
AsiGI	ACCGGT	1 cut(s)	940
AspS9I	GGNCC	1 cut(s)	1268
AsuC2I	CCSGG	1 cut(s)	767
AsuII	TTCGAA	2 cut(s)	577, 1151
BamHI	GGATCC	1 cut(s)	550
BanII	GRGCYC	1 cut(s)	363
BbsI	GAAGAC	3 cut(s)	154, 965, 1298
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	3 cut(s)	731, 799, 900
BccI	CCATC	2 cut(s)	994, 1272
BciT130I	CCWGG	1 cut(s)	700
BcnI	CCSGG	1 cut(s)	767
BcoDI	GTCTC	1 cut(s)	750
BfaI	CTAG	1 cut(s)	854
BisI	GCNGC	3 cut(s)	720, 788, 889
BlsI	GCNGC	3 cut(s)	721, 789, 890
Bme1390I	CCNGG	2 cut(s)	700, 767
BmgBI	CACGTC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	1268
BmiI	GGNNCC	4 cut(s)	231, 369, 552, 1327
BmrFI	CCNGG	2 cut(s)	700, 767
BmrI	ACTGGG	1 cut(s)	446
BmsI	GCATC	1 cut(s)	309
BmuI	ACTGGG	1 cut(s)	446
BpiI	GAAGAC	3 cut(s)	154, 965, 1298
BpmI	CTGGAG	1 cut(s)	245
Bpu14I	TTCGAA	2 cut(s)	577, 1151
BpuEI	CTTGAG	2 cut(s)	349, 1285
BpuMI	CCSGG	1 cut(s)	767
BsaBI	GATNNNNATC	1 cut(s)	525
BsaHI	GRCGYC	1 cut(s)	1197
BsaWI	WCCGGW	2 cut(s)	306, 940
BsaXI	ACNNNNNCTCC	2 cut(s)	1124, 1154
Bsc4I	CCNNNNNNNGG	1 cut(s)	755
Bse118I	RCCGGY	1 cut(s)	940
Bse1I	ACTGG	4 cut(s)	394, 441, 791, 836
Bse3DI	GCAATG	2 cut(s)	87, 921
Bse8I	GATNNNNATC	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	700
BseGI	GGATG	3 cut(s)	840, 1225, 1287
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	1 cut(s)	755
BseMI	GCAATG	2 cut(s)	87, 921
BseMII	CTCAG	2 cut(s)	115, 504
BseNI	ACTGG	4 cut(s)	394, 441, 791, 836
BseRI	GAGGAG	1 cut(s)	911
BseXI	GCAGC	3 cut(s)	731, 799, 900
BseYI	CCCAGC	1 cut(s)	323
Bsh1285I	CGRYCG	2 cut(s)	945, 1171
BshFI	GGCC	4 cut(s)	619, 930, 1231, 1269
BshTI	ACCGGT	1 cut(s)	940
BsiEI	CGRYCG	2 cut(s)	945, 1171
BsiHKAI	GWGCWC	1 cut(s)	363
BsiSI	CCGG	3 cut(s)	307, 766, 941
BslFI	GGGAC	1 cut(s)	1066
BslI	CCNNNNNNNGG	1 cut(s)	755
BsmAI	GTCTC	1 cut(s)	750
BsmFI	GGGAC	1 cut(s)	1066
BsnI	GGCC	4 cut(s)	619, 930, 1231, 1269
Bsp119I	TTCGAA	2 cut(s)	577, 1151
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp1407I	TGTACA	1 cut(s)	808
Bsp143I	GATC	8 cut(s)	451, 550, 610, 863, 900, 982, 1168, 1351
BspANI	GGCC	4 cut(s)	619, 930, 1231, 1269
BspCNI	CTCAG	2 cut(s)	114, 505
BspHI	TCATGA	1 cut(s)	979
BspLI	GGNNCC	4 cut(s)	231, 369, 552, 1327
BspPI	GGATC	4 cut(s)	459, 545, 558, 977
BspT104I	TTCGAA	2 cut(s)	577, 1151
BsrDI	GCAATG	2 cut(s)	87, 921
BsrFI	RCCGGY	1 cut(s)	940
BsrGI	TGTACA	1 cut(s)	808
BsrI	ACTGG	4 cut(s)	394, 441, 791, 836
BssAI	RCCGGY	1 cut(s)	940
BssMI	GATC	8 cut(s)	451, 550, 610, 863, 900, 982, 1168, 1351
BssNI	GRCGYC	1 cut(s)	1197
Bst2UI	CCWGG	1 cut(s)	700
Bst4CI	ACNGT	1 cut(s)	1136
BstACI	GRCGYC	1 cut(s)	1197
BstAPI	GCANNNNNTGC	1 cut(s)	793
BstAUI	TGTACA	1 cut(s)	808
BstBI	TTCGAA	2 cut(s)	577, 1151
BstC8I	GCNNGC	2 cut(s)	64, 928
BstDEI	CTNAG	3 cut(s)	101, 455, 513
BstF5I	GGATG	3 cut(s)	840, 1225, 1287
BstKTI	GATC	8 cut(s)	454, 553, 613, 866, 903, 985, 1171, 1354
BstMAI	GTCTC	1 cut(s)	750
BstMBI	GATC	8 cut(s)	451, 550, 610, 863, 900, 982, 1168, 1351
BstMCI	CGRYCG	2 cut(s)	945, 1171
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 367, 784, 793, 1203
BstNI	CCWGG	1 cut(s)	700
BstNSI	RCATGY	2 cut(s)	66, 1294
BstSCI	CCNGG	2 cut(s)	698, 765
BstV1I	GCAGC	3 cut(s)	731, 799, 900
BstV2I	GAAGAC	3 cut(s)	154, 965, 1298
BstX2I	RGATCY	2 cut(s)	451, 550
BstXI	CCANNNNNNTGG	1 cut(s)	134
BstYI	RGATCY	2 cut(s)	451, 550
BsuRI	GGCC	4 cut(s)	619, 930, 1231, 1269
BtrI	CACGTC	1 cut(s)	7
BtsCI	GGATG	3 cut(s)	840, 1225, 1287
BtsIMutI	CAGTG	1 cut(s)	798
Cac8I	GCNNGC	2 cut(s)	64, 928
CciI	TCATGA	1 cut(s)	979
Cfr10I	RCCGGY	1 cut(s)	940
Cfr13I	GGNCC	1 cut(s)	1268
CseI	GACGC	1 cut(s)	1186
Csp6I	GTAC	1 cut(s)	809
CspAI	ACCGGT	1 cut(s)	940
CviAII	CATG	5 cut(s)	63, 814, 904, 980, 1291
CviQI	GTAC	1 cut(s)	809
DdeI	CTNAG	3 cut(s)	101, 455, 513
DpnI	GATC	8 cut(s)	453, 552, 612, 865, 902, 984, 1170, 1353
DpnII	GATC	8 cut(s)	451, 550, 610, 863, 900, 982, 1168, 1351
DrdI	GACNNNNNNGTC	1 cut(s)	1291
DseDI	GACNNNNNNGTC	1 cut(s)	1291
Ecl136II	GAGCTC	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	363
Eco53kI	GAGCTC	1 cut(s)	361
Eco57I	CTGAAG	2 cut(s)	13, 467
EcoICRI	GAGCTC	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	1268
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	698
EcoT22I	ATGCAT	1 cut(s)	1243
EcoT38I	GRGCYC	1 cut(s)	363
FaeI	CATG	5 cut(s)	66, 817, 907, 983, 1294
FalI	AAGNNNNNCTT	8 cut(s)	146, 178, 767, 799, 998, 1030, 1216, 1248
FaqI	GGGAC	1 cut(s)	1066
FatI	CATG	5 cut(s)	62, 813, 903, 979, 1290
Fnu4HI	GCNGC	3 cut(s)	720, 788, 889
FokI	GGATG	3 cut(s)	847, 1232, 1294
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	3 cut(s)	720, 788, 889
FspBI	CTAG	1 cut(s)	854
GluI	GCNGC	3 cut(s)	720, 788, 889
GsaI	CCCAGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	4 cut(s)	619, 930, 1231, 1269
HapII	CCGG	3 cut(s)	307, 766, 941
HgaI	GACGC	1 cut(s)	1186
Hin1I	GRCGYC	1 cut(s)	1197
Hin1II	CATG	5 cut(s)	66, 817, 907, 983, 1294
HinfI	GANTC	6 cut(s)	97, 310, 579, 743, 838, 1018
HpaII	CCGG	3 cut(s)	307, 766, 941
Hpy166II	GTNNAC	2 cut(s)	507, 811
Hpy188I	TCNGA	8 cut(s)	32, 96, 104, 195, 203, 303, 451, 486
Hpy188III	TCNNGA	4 cut(s)	224, 400, 980, 1166
Hpy8I	GTNNAC	2 cut(s)	507, 811
HpyAV	CCTTC	7 cut(s)	492, 619, 631, 1000, 1004, 1043, 1242
HpyCH4III	ACNGT	1 cut(s)	1136
HpyCH4IV	ACGT	2 cut(s)	6, 122
HpyCH4V	TGCA	7 cut(s)	62, 66, 275, 293, 787, 1088, 1241
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 367, 784, 793, 1203
HpyF3I	CTNAG	3 cut(s)	101, 455, 513
HpySE526I	ACGT	2 cut(s)	6, 122
Hsp92I	GRCGYC	1 cut(s)	1197
Hsp92II	CATG	5 cut(s)	66, 817, 907, 983, 1294
Kzo9I	GATC	8 cut(s)	451, 550, 610, 863, 900, 982, 1168, 1351
LmnI	GCTCC	4 cut(s)	140, 367, 716, 1331
Lsp1109I	GCAGC	3 cut(s)	731, 799, 900
LweI	GCATC	1 cut(s)	309
MaeI	CTAG	1 cut(s)	854
MaeII	ACGT	2 cut(s)	6, 122
MaeIII	GTNAC	3 cut(s)	170, 183, 1198
MalI	GATC	8 cut(s)	453, 552, 612, 865, 902, 984, 1170, 1353
MboI	GATC	8 cut(s)	451, 550, 610, 863, 900, 982, 1168, 1351
MboII	GAAGA	6 cut(s)	154, 965, 968, 1042, 1045, 1298
MflI	RGATCY	2 cut(s)	451, 550
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	9 cut(s)	52, 130, 197, 204, 237, 409, 879, 1037, 1314
MlyI	GAGTC	2 cut(s)	304, 752
Mph1103I	ATGCAT	1 cut(s)	1243
MseI	TTAA	4 cut(s)	251, 287, 408, 762
MslI	CAYNNNNRTG	2 cut(s)	67, 1190
MspI	CCGG	3 cut(s)	307, 766, 941
MspR9I	CCNGG	2 cut(s)	700, 767
MvaI	CCWGG	1 cut(s)	700
MwoI	GCNNNNNNNGC	5 cut(s)	89, 367, 784, 793, 1203
NciI	CCSGG	1 cut(s)	767
NdeII	GATC	8 cut(s)	451, 550, 610, 863, 900, 982, 1168, 1351
NlaIII	CATG	5 cut(s)	66, 817, 907, 983, 1294
NlaIV	GGNNCC	4 cut(s)	231, 369, 552, 1327
NmuCI	GTSAC	2 cut(s)	183, 1198
NsiI	ATGCAT	1 cut(s)	1243
NspI	RCATGY	2 cut(s)	66, 1294
NspV	TTCGAA	2 cut(s)	577, 1151
PaeI	GCATGC	1 cut(s)	66
PagI	TCATGA	1 cut(s)	979
PciI	ACATGT	1 cut(s)	1290
PfeI	GAWTC	4 cut(s)	97, 579, 838, 1018
PflMI	CCANNNNNTGG	1 cut(s)	755
PfoI	TCCNGGA	1 cut(s)	698
PinAI	ACCGGT	1 cut(s)	940
PkrI	GCNGC	3 cut(s)	721, 789, 890
Ple19I	CGATCG	1 cut(s)	1171
PleI	GAGTC	2 cut(s)	304, 751
PpsI	GAGTC	2 cut(s)	304, 751
PscI	ACATGT	1 cut(s)	1290
Psp124BI	GAGCTC	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	698
PspFI	CCCAGC	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	698
PspN4I	GGNNCC	4 cut(s)	231, 369, 552, 1327
PspPI	GGNCC	1 cut(s)	1268
PsuI	RGATCY	2 cut(s)	451, 550
PvuI	CGATCG	1 cut(s)	1171
RsaI	GTAC	1 cut(s)	810
RsaNI	GTAC	1 cut(s)	809
RseI	CAYNNNNRTG	2 cut(s)	67, 1190
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	4 cut(s)	251, 287, 408, 762
SatI	GCNGC	3 cut(s)	720, 788, 889
Sau3AI	GATC	8 cut(s)	451, 550, 610, 863, 900, 982, 1168, 1351
Sau96I	GGNCC	1 cut(s)	1268
SchI	GAGTC	2 cut(s)	304, 752
ScrFI	CCNGG	2 cut(s)	700, 767
SduI	GDGCHC	1 cut(s)	363
SfaNI	GCATC	1 cut(s)	309
SfuI	TTCGAA	2 cut(s)	577, 1151
SmiMI	CAYNNNNRTG	2 cut(s)	67, 1190
SmlI	CTYRAG	2 cut(s)	328, 1300
SmoI	CTYRAG	2 cut(s)	328, 1300
SphI	GCATGC	1 cut(s)	66
Sse9I	AATT	9 cut(s)	52, 130, 197, 204, 237, 409, 879, 1037, 1314
SspMI	CTAG	1 cut(s)	854
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	698, 765
TaaI	ACNGT	1 cut(s)	1136
TaiI	ACGT	2 cut(s)	9, 125
TaqI	TCGA	6 cut(s)	357, 577, 1092, 1151, 1167, 1171
TaqII	GACCGA	1 cut(s)	179
TasI	AATT	9 cut(s)	52, 130, 197, 204, 237, 409, 879, 1037, 1314
TatI	WGTACW	1 cut(s)	808
TfiI	GAWTC	4 cut(s)	97, 579, 838, 1018
Tru1I	TTAA	4 cut(s)	251, 287, 408, 762
Tru9I	TTAA	4 cut(s)	251, 287, 408, 762
TscAI	CASTG	1 cut(s)	798
TseFI	GTSAC	2 cut(s)	183, 1198
TseI	GCWGC	3 cut(s)	719, 787, 888
Tsp45I	GTSAC	2 cut(s)	183, 1198
TspDTI	ATGAA	7 cut(s)	76, 154, 689, 693, 830, 968, 1113
TspGWI	ACGGA	1 cut(s)	482
TspRI	CASTG	1 cut(s)	798
Van91I	CCANNNNNTGG	1 cut(s)	755
XapI	RAATTY	3 cut(s)	52, 197, 879
XceI	RCATGY	2 cut(s)	66, 1294
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XspI	CTAG	1 cut(s)	854
Zsp2I	ATGCAT	1 cut(s)	1243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.