Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002759.1

Orthogroup ID

OG0006563

Physical Location & Seq

Genomic Coordinates Forward (+)

328313 .. 328674

Gene Structure 362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002759.1_g000066.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

atggagagagtcggcaacattgttgacctcaagactccagctgttgtttatttagctgtggctgacagccttcttcaagatccatcaattttgaatggatggaaagaaggtttctccacattttctagcctcattgctcttgacagaacccagaagctgattaaaatgggtgtcaatagctcatgtggtgcagtgtcggccctgaggctaggcgaagcaggcccaagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

76

Amino Acids

8.01

Weight (kDa)

6.08

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05320 AT3G05320 AT3G05320
fragaria_vesca	FvH4_3g11981
malus_domestica	MD05G1256000.v1.1 MD10G1236200.v1.1
prunus_persica	Prupe.4G108200_v2.0.a1 Prupe.4G108200_v2.0.a1 Prupe.4G108200_v2.0.a1 Prupe.4G108200_v2.0.a1
pyrus_communis	pycom10g19760
rosa_chinensis	RchiOBHm_Chr5g0019591 RchiOBHm_Chr5g0019601 RchiOBHm_Chr5g0019611
rosa_laevigata	RLG00000019254 RLG00000032459
rosa_multiflora	Rmu_sc0002759.1_g000066
rosa_roxburghii	Rroxscaffold_1G00058470 Rroxscaffold_1G00058480
rosa_rugosa	Rorug05G0052300
rosa_samantha	Rh5AG142900 Rh5BG141400 Rh5BG141500 Rh5CG153400 Rh5DG142000
rosa_wichuraiana	Rw5G012640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	74
AgsI	TTSAA	2 cut(s)	77, 94
AluBI	AGCT	5 cut(s)	41, 56, 157, 180, 228
AluI	AGCT	5 cut(s)	41, 56, 157, 180, 228
AlwI	GGATC	1 cut(s)	74
AlwNI	CAGNNNCTG	1 cut(s)	157
AoxI	GGCC	2 cut(s)	198, 220
AspS9I	GGNCC	2 cut(s)	199, 221
AxyI	CCTNAGG	1 cut(s)	203
BccI	CCATC	2 cut(s)	91, 93
BfaI	CTAG	2 cut(s)	126, 209
BmgT120I	GGNCC	2 cut(s)	199, 221
BpmI	CTGGAG	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	14
Bse21I	CCTNAGG	1 cut(s)	203
Bse3DI	GCAATG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	104
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	210
BshFI	GGCC	2 cut(s)	200, 222
BsnI	GGCC	2 cut(s)	200, 222
Bsp143I	GATC	1 cut(s)	79
BspANI	GGCC	2 cut(s)	200, 222
BspCNI	CTCAG	1 cut(s)	195
BspPI	GGATC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	132
BssMI	GATC	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	104
BstKTI	GATC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 219
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
Bsu36I	CCTNAGG	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	200, 222
BtsCI	GGATG	1 cut(s)	104
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	220
CaiI	CAGNNNCTG	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	199, 221
CviAII	CATG	1 cut(s)	183
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Eco81I	CCTNAGG	1 cut(s)	203
FaeI	CATG	1 cut(s)	186
FaiI	YATR	1 cut(s)	184
FatI	CATG	1 cut(s)	182
FokI	GGATG	1 cut(s)	111
FspBI	CTAG	2 cut(s)	126, 209
GsuI	CTGGAG	1 cut(s)	21
HaeIII	GGCC	2 cut(s)	200, 222
Hin1II	CATG	1 cut(s)	186
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	2 cut(s)	9, 34
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188III	TCNNGA	3 cut(s)	31, 77, 140
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	2 cut(s)	80, 101
HpyCH4V	TGCA	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 219
HpyF3I	CTNAG	1 cut(s)	203
Hsp92II	CATG	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	79
LpnPI	CCDG	4 cut(s)	51, 164, 204, 215
MaeI	CTAG	2 cut(s)	126, 209
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	1 cut(s)	65
MflI	RGATCY	1 cut(s)	79
MluCI	AATT	1 cut(s)	87
MlyI	GAGTC	2 cut(s)	18, 28
MnlI	CCTC	3 cut(s)	38, 140, 198
MseI	TTAA	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	197, 219
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	1 cut(s)	186
PleI	GAGTC	2 cut(s)	17, 28
PpsI	GAGTC	2 cut(s)	17, 28
PspPI	GGNCC	2 cut(s)	199, 221
PstNI	CAGNNNCTG	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	162
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	2 cut(s)	199, 221
SchI	GAGTC	2 cut(s)	18, 28
SetI	ASST	7 cut(s)	30, 43, 58, 112, 159, 182, 230
SgeI	CNNG	9 cut(s)	43, 50, 89, 138, 152, 163, 195, 214, 221
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	1 cut(s)	87
SspMI	CTAG	2 cut(s)	126, 209
TasI	AATT	1 cut(s)	87
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	1 cut(s)	198
TspRI	CASTG	1 cut(s)	198
XspI	CTAG	2 cut(s)	126, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.