Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G12810 AT3G12810 |
| fragaria_vesca | FvH4_3g15170 |
| malus_domestica | MD10G1206600.v1.1 |
| prunus_persica | Prupe.4G135700_v2.0.a1 Prupe.4G135700_v2.0.a1 |
| pyrus_communis | pycom10g17640 |
| rosa_chinensis | RchiOBHm_Chr5g0025621 |
| rosa_laevigata | RLG00000032852 |
| rosa_multiflora | Rmu_sc0004107.1_g000018 |
| rosa_roxburghii | Rroxscaffold_1G00054140 |
| rosa_rugosa | Rorug05G0087200 |
| rosa_samantha | Rh5AG179000 Rh5BG178100 Rh5CG195700 Rh5DG177300 |
| rosa_wichuraiana | Rw5G016250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 2606, 3288, 5858 |
| AatII | GACGTC | 1 cut(s) | 792 |
| Acc36I | ACCTGC | 4 cut(s) | 3346, 3407, 4546, 6187 |
| Acc65I | GGTACC | 1 cut(s) | 5687 |
| AccB1I | GGYRCC | 2 cut(s) | 3226, 5687 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 6027 |
| AccBSI | CCGCTC | 1 cut(s) | 5791 |
| AccI | GTMKAC | 6 cut(s) | 576, 2410, 2503, 2748, 4940, 5363 |
| AciI | CCGC | 6 cut(s) | 262, 914, 1689, 2233, 4447, 5791 |
| AcoI | YGGCCR | 2 cut(s) | 89, 2426 |
| AcuI | CTGAAG | 6 cut(s) | 1149, 1635, 3257, 3455, 3821, 4742 |
| AcvI | CACGTG | 1 cut(s) | 3746 |
| AcyI | GRCGYC | 2 cut(s) | 789, 3227 |
| AfaI | GTAC | 8 cut(s) | 422, 600, 886, 2251, 3125, 5223, 5653, 5689 |
| AfeI | AGCGCT | 1 cut(s) | 3265 |
| AflII | CTTAAG | 1 cut(s) | 1766 |
| AflIII | ACRYGT | 4 cut(s) | 887, 1243, 3120, 3743 |
| AgeI | ACCGGT | 1 cut(s) | 1124 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 148 |
| AhlI | ACTAGT | 1 cut(s) | 1952 |
| AjiI | CACGTC | 1 cut(s) | 2458 |
| AjnI | CCWGG | 9 cut(s) | 880, 940, 1000, 2510, 2728, 3186, 5576, 5760, 6373 |
| Alw21I | GWGCWC | 3 cut(s) | 1590, 3782, 5675 |
| Alw26I | GTCTC | 9 cut(s) | 32, 1313, 1967, 2289, 2448, 2956, 4421, 6069, 6381 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1691, 2996, 3665 |
| Ama87I | CYCGRG | 1 cut(s) | 3222 |
| Aor51HI | AGCGCT | 1 cut(s) | 3265 |
| AoxI | GGCC | 4 cut(s) | 60, 89, 801, 2426 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1873, 1905, 4514, 4546 |
| AseI | ATTAAT | 1 cut(s) | 3458 |
| AsiGI | ACCGGT | 1 cut(s) | 1124 |
| Asp700I | GAANNNNTTC | 8 cut(s) | 305, 2937, 3168, 3198, 5504, 5984, 6154, 6369 |
| Asp718I | GGTACC | 1 cut(s) | 5687 |
| AspLEI | GCGC | 6 cut(s) | 854, 974, 2040, 3229, 3266, 3826 |
| AspS9I | GGNCC | 9 cut(s) | 14, 61, 1928, 1945, 2732, 3543, 3703, 4378, 5234 |
| AsuII | TTCGAA | 2 cut(s) | 5446, 5926 |
| AsuNHI | GCTAGC | 2 cut(s) | 1426, 2546 |
| AvaI | CYCGRG | 1 cut(s) | 3222 |
| AvaII | GGWCC | 8 cut(s) | 14, 1928, 1945, 2732, 3543, 3703, 4378, 5234 |
| AxyI | CCTNAGG | 3 cut(s) | 2753, 3050, 3555 |
| BaeGI | GKGCMC | 2 cut(s) | 3916, 5685 |
| BamHI | GGATCC | 1 cut(s) | 997 |
| BanI | GGYRCC | 2 cut(s) | 3226, 5687 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2132, 2164, 2522, 2554 |
| BbrPI | CACGTG | 1 cut(s) | 3746 |
| BbsI | GAAGAC | 9 cut(s) | 792, 1062, 1877, 2119, 2541, 4803, 4910, 6103, 6303 |
| Bbv12I | GWGCWC | 3 cut(s) | 1590, 3782, 5675 |
| BceAI | ACGGC | 1 cut(s) | 5833 |
| BciT130I | CCWGG | 9 cut(s) | 882, 942, 1002, 2512, 2730, 3188, 5578, 5762, 6375 |
| BciVI | GTATCC | 2 cut(s) | 3848, 5881 |
| BclI | TGATCA | 1 cut(s) | 5941 |
| BcoDI | GTCTC | 9 cut(s) | 32, 1313, 1967, 2289, 2448, 2956, 4421, 6069, 6381 |
| BcuI | ACTAGT | 1 cut(s) | 1952 |
| BfmI | CTRYAG | 6 cut(s) | 2258, 2500, 2742, 2988, 4293, 5907 |
| BfoI | RGCGCY | 2 cut(s) | 3230, 3267 |
| BfrI | CTTAAG | 1 cut(s) | 1766 |
| BfuAI | ACCTGC | 4 cut(s) | 3346, 3407, 4546, 6187 |
| BfuI | GTATCC | 2 cut(s) | 3848, 5881 |
| BglII | AGATCT | 3 cut(s) | 709, 1700, 4765 |
| BlpI | GCTNAGC | 1 cut(s) | 5469 |
| Bme1390I | CCNGG | 9 cut(s) | 882, 942, 1002, 2512, 2730, 3188, 5578, 5762, 6375 |
| Bme18I | GGWCC | 8 cut(s) | 14, 1928, 1945, 2732, 3543, 3703, 4378, 5234 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 148 |
| BmeT110I | CYCGRG | 1 cut(s) | 3222 |
| BmgBI | CACGTC | 1 cut(s) | 2458 |
| BmgT120I | GGNCC | 9 cut(s) | 14, 61, 1928, 1945, 2732, 3543, 3703, 4378, 5234 |
| BmrFI | CCNGG | 9 cut(s) | 882, 942, 1002, 2512, 2730, 3188, 5578, 5762, 6375 |
| BmtI | GCTAGC | 2 cut(s) | 1430, 2550 |
| BpiI | GAAGAC | 9 cut(s) | 792, 1062, 1877, 2119, 2541, 4803, 4910, 6103, 6303 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 407, 439, 3884, 3916 |
| BpmI | CTGGAG | 3 cut(s) | 1320, 2494, 5917 |
| Bpu10I | CCTNAGC | 1 cut(s) | 174 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 5469 |
| Bpu14I | TTCGAA | 2 cut(s) | 5446, 5926 |
| BpuEI | CTTGAG | 6 cut(s) | 413, 740, 1697, 3034, 3699, 4916 |
| Bsa29I | ATCGAT | 1 cut(s) | 3721 |
| BsaAI | YACGTR | 2 cut(s) | 1781, 3746 |
| BsaBI | GATNNNNATC | 1 cut(s) | 5919 |
| BsaHI | GRCGYC | 2 cut(s) | 789, 3227 |
| BsaI | GGTCTC | 4 cut(s) | 32, 2289, 6069, 6381 |
| BsaJI | CCNNGG | 9 cut(s) | 17, 1060, 1236, 1371, 4608, 5761, 6021, 6090, 6242 |
| BsaWI | WCCGGW | 2 cut(s) | 1124, 5368 |
| Bse118I | RCCGGY | 1 cut(s) | 1124 |
| Bse21I | CCTNAGG | 3 cut(s) | 2753, 3050, 3555 |
| Bse3DI | GCAATG | 5 cut(s) | 2541, 5317, 5784, 5843, 5944 |
| Bse8I | GATNNNNATC | 1 cut(s) | 5919 |
| BseBI | CCWGG | 9 cut(s) | 882, 942, 1002, 2512, 2730, 3188, 5578, 5762, 6375 |
| BseCI | ATCGAT | 1 cut(s) | 3721 |
| BseDI | CCNNGG | 9 cut(s) | 17, 1060, 1236, 1371, 4608, 5761, 6021, 6090, 6242 |
| BseJI | GATNNNNATC | 1 cut(s) | 5919 |
| BseMI | GCAATG | 5 cut(s) | 2541, 5317, 5784, 5843, 5944 |
| BseRI | GAGGAG | 9 cut(s) | 134, 737, 1349, 1352, 2244, 2972, 3118, 3572, 4439 |
| BseSI | GKGCMC | 2 cut(s) | 3916, 5685 |
| BsgI | GTGCAG | 6 cut(s) | 488, 1209, 1689, 3268, 5691, 6207 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1129 |
| BshFI | GGCC | 4 cut(s) | 62, 91, 803, 2428 |
| BshNI | GGYRCC | 2 cut(s) | 3226, 5687 |
| BshTI | ACCGGT | 1 cut(s) | 1124 |
| BshVI | ATCGAT | 1 cut(s) | 3721 |
| BsiEI | CGRYCG | 1 cut(s) | 1129 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1590, 3782, 5675 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3222 |
| BsiSI | CCGG | 2 cut(s) | 1125, 5369 |
| BslFI | GGGAC | 7 cut(s) | 464, 1254, 1931, 2305, 4391, 4535, 5739 |
| BsmAI | GTCTC | 9 cut(s) | 32, 1313, 1967, 2289, 2448, 2956, 4421, 6069, 6381 |
| BsmBI | CGTCTC | 2 cut(s) | 2448, 4421 |
| BsmFI | GGGAC | 7 cut(s) | 464, 1254, 1931, 2305, 4391, 4535, 5739 |
| BsmI | GAATGC | 2 cut(s) | 635, 6041 |
| BsnI | GGCC | 4 cut(s) | 62, 91, 803, 2428 |
| Bso31I | GGTCTC | 4 cut(s) | 32, 2289, 6069, 6381 |
| BsoBI | CYCGRG | 1 cut(s) | 3222 |
| Bsp119I | TTCGAA | 2 cut(s) | 5446, 5926 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1590, 3782, 3916, 5675, 5685 |
| Bsp1407I | TGTACA | 2 cut(s) | 598, 5221 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 5469 |
| Bsp19I | CCATGG | 3 cut(s) | 1060, 1371, 6021 |
| BspACI | CCGC | 6 cut(s) | 262, 914, 1689, 2233, 4447, 5791 |
| BspANI | GGCC | 4 cut(s) | 62, 91, 803, 2428 |
| BspDI | ATCGAT | 1 cut(s) | 3721 |
| BspHI | TCATGA | 3 cut(s) | 34, 1878, 5115 |
| BspMAI | CTGCAG | 4 cut(s) | 2262, 2746, 2992, 4297 |
| BspMI | ACCTGC | 4 cut(s) | 3346, 3407, 4546, 6187 |
| BspOI | GCTAGC | 2 cut(s) | 1430, 2550 |
| BspQI | GCTCTTC | 2 cut(s) | 249, 5424 |
| BspT104I | TTCGAA | 2 cut(s) | 5446, 5926 |
| BspT107I | GGYRCC | 2 cut(s) | 3226, 5687 |
| BspTI | CTTAAG | 1 cut(s) | 1766 |
| BspTNI | GGTCTC | 4 cut(s) | 32, 2289, 6069, 6381 |
| BsrBI | CCGCTC | 1 cut(s) | 5791 |
| BsrDI | GCAATG | 5 cut(s) | 2541, 5317, 5784, 5843, 5944 |
| BsrFI | RCCGGY | 1 cut(s) | 1124 |
| BsrGI | TGTACA | 2 cut(s) | 598, 5221 |
| BssAI | RCCGGY | 1 cut(s) | 1124 |
| BssECI | CCNNGG | 9 cut(s) | 17, 1060, 1236, 1371, 4608, 5761, 6021, 6090, 6242 |
| BssNI | GRCGYC | 2 cut(s) | 789, 3227 |
| BssT1I | CCWWGG | 7 cut(s) | 17, 1060, 1236, 1371, 4608, 6021, 6242 |
| Bst2UI | CCWGG | 9 cut(s) | 882, 942, 1002, 2512, 2730, 3188, 5578, 5762, 6375 |
| Bst6I | CTCTTC | 5 cut(s) | 249, 2928, 4180, 4893, 5424 |
| BstACI | GRCGYC | 2 cut(s) | 789, 3227 |
| BstAFI | CTTAAG | 1 cut(s) | 1766 |
| BstAPI | GCANNNNNTGC | 6 cut(s) | 1232, 1691, 2570, 2996, 3215, 5783 |
| BstAUI | TGTACA | 2 cut(s) | 598, 5221 |
| BstBAI | YACGTR | 2 cut(s) | 1781, 3746 |
| BstBI | TTCGAA | 2 cut(s) | 5446, 5926 |
| BstDSI | CCRYGG | 4 cut(s) | 1060, 1371, 6021, 6090 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2358 |
| BstH2I | RGCGCY | 2 cut(s) | 3230, 3267 |
| BstHHI | GCGC | 6 cut(s) | 854, 974, 2040, 3229, 3266, 3826 |
| BstMAI | GTCTC | 9 cut(s) | 32, 1313, 1967, 2289, 2448, 2956, 4421, 6069, 6381 |
| BstMCI | CGRYCG | 1 cut(s) | 1129 |
| BstNI | CCWGG | 9 cut(s) | 882, 942, 1002, 2512, 2730, 3188, 5578, 5762, 6375 |
| BstSCI | CCNGG | 9 cut(s) | 880, 940, 1000, 2510, 2728, 3186, 5576, 5760, 6373 |
| BstSFI | CTRYAG | 6 cut(s) | 2258, 2500, 2742, 2988, 4293, 5907 |
| BstSLI | GKGCMC | 2 cut(s) | 3916, 5685 |
| BstV2I | GAAGAC | 9 cut(s) | 792, 1062, 1877, 2119, 2541, 4803, 4910, 6103, 6303 |
| BstX2I | RGATCY | 8 cut(s) | 709, 877, 937, 997, 1700, 3055, 4765, 5405 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 3734, 5184, 5577 |
| BstYI | RGATCY | 8 cut(s) | 709, 877, 937, 997, 1700, 3055, 4765, 5405 |
| Bsu15I | ATCGAT | 1 cut(s) | 3721 |
| Bsu36I | CCTNAGG | 3 cut(s) | 2753, 3050, 3555 |
| BsuI | GTATCC | 2 cut(s) | 3848, 5881 |
| BsuRI | GGCC | 4 cut(s) | 62, 91, 803, 2428 |
| BsuTUI | ATCGAT | 1 cut(s) | 3721 |
| BtgI | CCRYGG | 4 cut(s) | 1060, 1371, 6021, 6090 |
| BtgZI | GCGATG | 1 cut(s) | 2885 |
| BtrI | CACGTC | 1 cut(s) | 2458 |
| BtsI | GCAGTG | 2 cut(s) | 4407, 5508 |
| BveI | ACCTGC | 4 cut(s) | 3346, 3407, 4546, 6187 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1691, 2996, 3665 |
| CciI | TCATGA | 3 cut(s) | 34, 1878, 5115 |
| CfoI | GCGC | 6 cut(s) | 854, 974, 2040, 3229, 3266, 3826 |
| Cfr10I | RCCGGY | 1 cut(s) | 1124 |
| Cfr13I | GGNCC | 9 cut(s) | 14, 61, 1928, 1945, 2732, 3543, 3703, 4378, 5234 |
| ClaI | ATCGAT | 1 cut(s) | 3721 |
| CseI | GACGC | 2 cut(s) | 998, 4532 |
| CsiI | ACCWGGT | 1 cut(s) | 3186 |
| Csp6I | GTAC | 8 cut(s) | 421, 599, 885, 2250, 3124, 5222, 5652, 5688 |
| CspAI | ACCGGT | 1 cut(s) | 1124 |
| CviQI | GTAC | 8 cut(s) | 421, 599, 885, 2250, 3124, 5222, 5652, 5688 |
| DinI | GGCGCC | 1 cut(s) | 3228 |
| DraI | TTTAAA | 4 cut(s) | 2214, 2448, 2896, 4714 |
| DriI | GACNNNNNGTC | 1 cut(s) | 148 |
| EaeI | YGGCCR | 2 cut(s) | 89, 2426 |
| Eam1104I | CTCTTC | 5 cut(s) | 249, 2928, 4180, 4893, 5424 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 148 |
| EarI | CTCTTC | 5 cut(s) | 249, 2928, 4180, 4893, 5424 |
| Eco130I | CCWWGG | 7 cut(s) | 17, 1060, 1236, 1371, 4608, 6021, 6242 |
| Eco31I | GGTCTC | 4 cut(s) | 32, 2289, 6069, 6381 |
| Eco32I | GATATC | 4 cut(s) | 1644, 3490, 5303, 6058 |
| Eco47I | GGWCC | 8 cut(s) | 14, 1928, 1945, 2732, 3543, 3703, 4378, 5234 |
| Eco47III | AGCGCT | 1 cut(s) | 3265 |
| Eco57I | CTGAAG | 6 cut(s) | 1149, 1635, 3257, 3455, 3821, 4742 |
| Eco72I | CACGTG | 1 cut(s) | 3746 |
| Eco81I | CCTNAGG | 3 cut(s) | 2753, 3050, 3555 |
| Eco88I | CYCGRG | 1 cut(s) | 3222 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2358 |
| EcoO109I | RGGNCCY | 3 cut(s) | 61, 1928, 4378 |
| EcoRI | GAATTC | 2 cut(s) | 2330, 3866 |
| EcoRII | CCWGG | 9 cut(s) | 880, 940, 1000, 2510, 2728, 3186, 5576, 5760, 6373 |
| EcoRV | GATATC | 4 cut(s) | 1644, 3490, 5303, 6058 |
| EcoT14I | CCWWGG | 7 cut(s) | 17, 1060, 1236, 1371, 4608, 6021, 6242 |
| EcoT22I | ATGCAT | 3 cut(s) | 2090, 2295, 5845 |
| EgeI | GGCGCC | 1 cut(s) | 3228 |
| EheI | GGCGCC | 1 cut(s) | 3228 |
| ErhI | CCWWGG | 7 cut(s) | 17, 1060, 1236, 1371, 4608, 6021, 6242 |
| Esp3I | CGTCTC | 2 cut(s) | 2448, 4421 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 696, 728, 2553, 2585, 4752, 4784 |
| FaqI | GGGAC | 7 cut(s) | 464, 1254, 1931, 2305, 4391, 4535, 5739 |
| FbaI | TGATCA | 1 cut(s) | 5941 |
| FblI | GTMKAC | 6 cut(s) | 576, 2410, 2503, 2748, 4940, 5363 |
| GlaI | GCGC | 6 cut(s) | 853, 973, 2039, 3228, 3265, 3825 |
| GsuI | CTGGAG | 3 cut(s) | 1320, 2494, 5917 |
| HaeII | RGCGCY | 2 cut(s) | 3230, 3267 |
| HaeIII | GGCC | 4 cut(s) | 62, 91, 803, 2428 |
| HapII | CCGG | 2 cut(s) | 1125, 5369 |
| HgaI | GACGC | 2 cut(s) | 998, 4532 |
| HhaI | GCGC | 6 cut(s) | 854, 974, 2040, 3229, 3266, 3826 |
| Hin1I | GRCGYC | 2 cut(s) | 789, 3227 |
| Hin6I | GCGC | 6 cut(s) | 852, 972, 2038, 3227, 3264, 3824 |
| HinP1I | GCGC | 6 cut(s) | 852, 972, 2038, 3227, 3264, 3824 |
| HincII | GTYRAC | 4 cut(s) | 1576, 2244, 3621, 4063 |
| HindII | GTYRAC | 4 cut(s) | 1576, 2244, 3621, 4063 |
| HindIII | AAGCTT | 3 cut(s) | 1218, 3878, 5602 |
| HpaI | GTTAAC | 1 cut(s) | 2244 |
| HpaII | CCGG | 2 cut(s) | 1125, 5369 |
| Hpy99I | CGWCG | 3 cut(s) | 90, 1134, 2445 |
| HpyCH4IV | ACGT | 8 cut(s) | 789, 1780, 2457, 3745, 4336, 4846, 4867, 5650 |
| HpySE526I | ACGT | 8 cut(s) | 789, 1780, 2457, 3745, 4336, 4846, 4867, 5650 |
| Hsp92I | GRCGYC | 2 cut(s) | 789, 3227 |
| HspAI | GCGC | 6 cut(s) | 852, 972, 2038, 3227, 3264, 3824 |
| KasI | GGCGCC | 1 cut(s) | 3226 |
| KflI | GGGWCCC | 1 cut(s) | 4378 |
| KpnI | GGTACC | 1 cut(s) | 5691 |
| Ksp22I | TGATCA | 1 cut(s) | 5941 |
| KspAI | GTTAAC | 1 cut(s) | 2244 |
| LguI | GCTCTTC | 2 cut(s) | 249, 5424 |
| LmnI | GCTCC | 8 cut(s) | 76, 1199, 2475, 2555, 2854, 3892, 4990, 5244 |
| MabI | ACCWGGT | 1 cut(s) | 3186 |
| MaeII | ACGT | 8 cut(s) | 789, 1780, 2457, 3745, 4336, 4846, 4867, 5650 |
| MbiI | CCGCTC | 1 cut(s) | 5791 |
| MfeI | CAATTG | 4 cut(s) | 1884, 2696, 3342, 4851 |
| MflI | RGATCY | 8 cut(s) | 709, 877, 937, 997, 1700, 3055, 4765, 5405 |
| MhlI | GDGCHC | 5 cut(s) | 1590, 3782, 3916, 5675, 5685 |
| Mly113I | GGCGCC | 1 cut(s) | 3227 |
| MlyI | GAGTC | 8 cut(s) | 158, 1571, 2499, 4564, 4793, 5018, 5754, 6332 |
| MmeI | TCCRAC | 4 cut(s) | 3619, 5775, 6259, 6312 |
| Mph1103I | ATGCAT | 3 cut(s) | 2090, 2295, 5845 |
| MroXI | GAANNNNTTC | 8 cut(s) | 305, 2937, 3168, 3198, 5504, 5984, 6154, 6369 |
| MspA1I | CMGCKG | 1 cut(s) | 1691 |
| MspCI | CTTAAG | 1 cut(s) | 1766 |
| MspI | CCGG | 2 cut(s) | 1125, 5369 |
| MspR9I | CCNGG | 9 cut(s) | 882, 942, 1002, 2512, 2730, 3188, 5578, 5762, 6375 |
| MunI | CAATTG | 4 cut(s) | 1884, 2696, 3342, 4851 |
| Mva1269I | GAATGC | 2 cut(s) | 635, 6041 |
| MvaI | CCWGG | 9 cut(s) | 882, 942, 1002, 2512, 2730, 3188, 5578, 5762, 6375 |
| NarI | GGCGCC | 1 cut(s) | 3227 |
| NcoI | CCATGG | 3 cut(s) | 1060, 1371, 6021 |
| NheI | GCTAGC | 2 cut(s) | 1426, 2546 |
| NmuCI | GTSAC | 9 cut(s) | 790, 1280, 2190, 3312, 3446, 3683, 5190, 5255, 5536 |
| NsiI | ATGCAT | 3 cut(s) | 2090, 2295, 5845 |
| NspV | TTCGAA | 2 cut(s) | 5446, 5926 |
| PaeI | GCATGC | 2 cut(s) | 214, 4007 |
| PagI | TCATGA | 3 cut(s) | 34, 1878, 5115 |
| PciI | ACATGT | 3 cut(s) | 887, 1243, 3120 |
| PciSI | GCTCTTC | 2 cut(s) | 249, 5424 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2449, 3727 |
| PctI | GAATGC | 2 cut(s) | 635, 6041 |
| PdmI | GAANNNNTTC | 8 cut(s) | 305, 2937, 3168, 3198, 5504, 5984, 6154, 6369 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 6027 |
| PfoI | TCCNGGA | 2 cut(s) | 2510, 5576 |
| PinAI | ACCGGT | 1 cut(s) | 1124 |
| PleI | GAGTC | 8 cut(s) | 157, 1571, 2499, 4564, 4793, 5017, 5753, 6331 |
| PluTI | GGCGCC | 1 cut(s) | 3230 |
| PmaCI | CACGTG | 1 cut(s) | 3746 |
| PmlI | CACGTG | 1 cut(s) | 3746 |
| PpsI | GAGTC | 8 cut(s) | 157, 1571, 2499, 4564, 4793, 5017, 5753, 6331 |
| Ppu21I | YACGTR | 2 cut(s) | 1781, 3746 |
| PpuMI | RGGWCCY | 2 cut(s) | 1928, 4378 |
| PscI | ACATGT | 3 cut(s) | 887, 1243, 3120 |
| PshBI | ATTAAT | 1 cut(s) | 3458 |
| PsiI | TTATAA | 3 cut(s) | 2606, 3288, 5858 |
| Psp5II | RGGWCCY | 2 cut(s) | 1928, 4378 |
| Psp6I | CCWGG | 9 cut(s) | 880, 940, 1000, 2510, 2728, 3186, 5576, 5760, 6373 |
| PspCI | CACGTG | 1 cut(s) | 3746 |
| PspGI | CCWGG | 9 cut(s) | 880, 940, 1000, 2510, 2728, 3186, 5576, 5760, 6373 |
| PspPI | GGNCC | 9 cut(s) | 14, 61, 1928, 1945, 2732, 3543, 3703, 4378, 5234 |
| PspPPI | RGGWCCY | 2 cut(s) | 1928, 4378 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 5094, 5126 |
| PstI | CTGCAG | 4 cut(s) | 2262, 2746, 2992, 4297 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1691, 2996, 3665 |
| PsuI | RGATCY | 8 cut(s) | 709, 877, 937, 997, 1700, 3055, 4765, 5405 |
| RsaI | GTAC | 8 cut(s) | 422, 600, 886, 2251, 3125, 5223, 5653, 5689 |
| RsaNI | GTAC | 8 cut(s) | 421, 599, 885, 2250, 3124, 5222, 5652, 5688 |
| SapI | GCTCTTC | 2 cut(s) | 249, 5424 |
| Sau96I | GGNCC | 9 cut(s) | 14, 61, 1928, 1945, 2732, 3543, 3703, 4378, 5234 |
| SchI | GAGTC | 8 cut(s) | 158, 1571, 2499, 4564, 4793, 5018, 5754, 6332 |
| ScrFI | CCNGG | 9 cut(s) | 882, 942, 1002, 2512, 2730, 3188, 5578, 5762, 6375 |
| SduI | GDGCHC | 5 cut(s) | 1590, 3782, 3916, 5675, 5685 |
| SexAI | ACCWGGT | 1 cut(s) | 3186 |
| SfcI | CTRYAG | 6 cut(s) | 2258, 2500, 2742, 2988, 4293, 5907 |
| SfoI | GGCGCC | 1 cut(s) | 3228 |
| SfuI | TTCGAA | 2 cut(s) | 5446, 5926 |
| SinI | GGWCC | 8 cut(s) | 14, 1928, 1945, 2732, 3543, 3703, 4378, 5234 |
| SmiI | ATTTAAAT | 1 cut(s) | 4714 |
| SmlI | CTYRAG | 7 cut(s) | 392, 719, 1676, 1766, 3013, 3714, 4931 |
| SmoI | CTYRAG | 7 cut(s) | 392, 719, 1676, 1766, 3013, 3714, 4931 |
| SpeI | ACTAGT | 1 cut(s) | 1952 |
| SphI | GCATGC | 2 cut(s) | 214, 4007 |
| SsiI | CCGC | 6 cut(s) | 262, 914, 1689, 2233, 4447, 5791 |
| SspDI | GGCGCC | 1 cut(s) | 3226 |
| SspI | AATATT | 4 cut(s) | 1210, 2926, 3462, 5443 |
| StyD4I | CCNGG | 9 cut(s) | 880, 940, 1000, 2510, 2728, 3186, 5576, 5760, 6373 |
| StyI | CCWWGG | 7 cut(s) | 17, 1060, 1236, 1371, 4608, 6021, 6242 |
| SwaI | ATTTAAAT | 1 cut(s) | 4714 |
| TaiI | ACGT | 8 cut(s) | 792, 1783, 2460, 3748, 4339, 4849, 4870, 5653 |
| TaqI | TCGA | 6 cut(s) | 23, 30, 3721, 5446, 5926, 6140 |
| TaqII | GACCGA | 1 cut(s) | 6057 |
| TatI | WGTACW | 3 cut(s) | 598, 3123, 5221 |
| TauI | GCSGC | 2 cut(s) | 1691, 2235 |
| TseFI | GTSAC | 9 cut(s) | 790, 1280, 2190, 3312, 3446, 3683, 5190, 5255, 5536 |
| Tsp45I | GTSAC | 9 cut(s) | 790, 1280, 2190, 3312, 3446, 3683, 5190, 5255, 5536 |
| TspGWI | ACGGA | 3 cut(s) | 2429, 4445, 6353 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 6027 |
| Vha464I | CTTAAG | 1 cut(s) | 1766 |
| VpaK11BI | GGWCC | 8 cut(s) | 14, 1928, 1945, 2732, 3543, 3703, 4378, 5234 |
| VspI | ATTAAT | 1 cut(s) | 3458 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2358 |
| XbaI | TCTAGA | 3 cut(s) | 2782, 4883, 5156 |
| XcmI | CCANNNNNNNNNTGG | 6 cut(s) | 99, 1369, 3240, 3982, 4096, 5181 |
| XmiI | GTMKAC | 6 cut(s) | 576, 2410, 2503, 2748, 4940, 5363 |
| XmnI | GAANNNNTTC | 8 cut(s) | 305, 2937, 3168, 3198, 5504, 5984, 6154, 6369 |
| ZraI | GACGTC | 1 cut(s) | 790 |
| Zsp2I | ATGCAT | 3 cut(s) | 2090, 2295, 5845 |