Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G12810 AT3G12810 |
| fragaria_vesca | FvH4_3g15170 |
| malus_domestica | MD10G1206600.v1.1 |
| prunus_persica | Prupe.4G135700_v2.0.a1 Prupe.4G135700_v2.0.a1 |
| pyrus_communis | pycom10g17640 |
| rosa_chinensis | RchiOBHm_Chr5g0025621 |
| rosa_laevigata | RLG00000032852 |
| rosa_multiflora | Rmu_sc0004107.1_g000018 |
| rosa_roxburghii | Rroxscaffold_1G00054140 |
| rosa_rugosa | Rorug05G0087200 |
| rosa_samantha | Rh5AG179000 Rh5BG178100 Rh5CG195700 Rh5DG177300 |
| rosa_wichuraiana | Rw5G016250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 788, 1470 |
| Acc36I | ACCTGC | 4 cut(s) | 1528, 2338, 2722, 4384 |
| Acc65I | GGTACC | 4 cut(s) | 1100, 3860, 3908, 3919 |
| AccB1I | GGYRCC | 5 cut(s) | 1100, 2833, 3860, 3908, 3919 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 4224 |
| AccI | GTMKAC | 4 cut(s) | 685, 930, 3113, 3536 |
| AclI | AACGTT | 1 cut(s) | 3633 |
| AclWI | GGATC | 6 cut(s) | 1719, 1732, 2375, 2837, 3171, 3586 |
| AcuI | CTGAAG | 6 cut(s) | 873, 2003, 2807, 2915, 3072, 4152 |
| AcvI | CACGTG | 1 cut(s) | 1928 |
| AcyI | GRCGYC | 1 cut(s) | 2354 |
| AfeI | AGCGCT | 1 cut(s) | 1349 |
| AflII | CTTAAG | 1 cut(s) | 935 |
| AflIII | ACRYGT | 1 cut(s) | 1925 |
| AhlI | ACTAGT | 1 cut(s) | 134 |
| AjiI | CACGTC | 1 cut(s) | 3433 |
| AjnI | CCWGG | 5 cut(s) | 910, 1353, 1368, 3981, 4570 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 832, 864, 3644, 3676 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 389, 421 |
| Alw21I | GWGCWC | 3 cut(s) | 1639, 2008, 2401 |
| Alw44I | GTGCAC | 1 cut(s) | 2004 |
| AlwI | GGATC | 6 cut(s) | 1719, 1732, 2375, 2837, 3171, 3586 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1847 |
| Aor51HI | AGCGCT | 1 cut(s) | 1349 |
| AoxI | GGCC | 2 cut(s) | 4227, 4585 |
| ApaLI | GTGCAC | 1 cut(s) | 2004 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 55, 87, 3077, 3109 |
| AseI | ATTAAT | 1 cut(s) | 1053 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 1119, 3677, 4181, 4351, 4566 |
| Asp718I | GGTACC | 4 cut(s) | 1100, 3860, 3908, 3919 |
| AspLEI | GCGC | 4 cut(s) | 222, 417, 1350, 1411 |
| AspS9I | GGNCC | 9 cut(s) | 110, 127, 914, 1885, 2554, 2620, 3407, 4188, 4227 |
| AsuHPI | GGTGA | 9 cut(s) | 1329, 1488, 1500, 2390, 2825, 3006, 3339, 3721, 4379 |
| AsuII | TTCGAA | 2 cut(s) | 1531, 3619 |
| AsuNHI | GCTAGC | 2 cut(s) | 728, 3227 |
| AvaII | GGWCC | 8 cut(s) | 110, 127, 914, 1885, 2554, 2620, 3407, 4188 |
| AxyI | CCTNAGG | 1 cut(s) | 1232 |
| BaeGI | GKGCMC | 2 cut(s) | 2008, 2098 |
| BamHI | GGATCC | 1 cut(s) | 1724 |
| BanI | GGYRCC | 5 cut(s) | 1100, 2833, 3860, 3908, 3919 |
| BanII | GRGCYC | 1 cut(s) | 2401 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 314, 346, 704, 736, 2386, 2418 |
| BauI | CACGAG | 1 cut(s) | 1404 |
| BbrPI | CACGTG | 1 cut(s) | 1928 |
| BbsI | GAAGAC | 6 cut(s) | 59, 723, 1122, 2349, 2976, 4300 |
| Bbv12I | GWGCWC | 3 cut(s) | 1639, 2008, 2401 |
| BceAI | ACGGC | 1 cut(s) | 428 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4454, 4488 |
| BciT130I | CCWGG | 5 cut(s) | 912, 1355, 1370, 3983, 4572 |
| BclI | TGATCA | 2 cut(s) | 1950, 3214 |
| BcuI | ACTAGT | 1 cut(s) | 134 |
| BfmI | CTRYAG | 6 cut(s) | 682, 924, 1170, 2331, 2469, 2475 |
| BfoI | RGCGCY | 2 cut(s) | 1351, 1412 |
| BfrI | CTTAAG | 1 cut(s) | 935 |
| BfuAI | ACCTGC | 4 cut(s) | 1528, 2338, 2722, 4384 |
| BmcAI | AGTACT | 1 cut(s) | 332 |
| Bme1390I | CCNGG | 5 cut(s) | 912, 1355, 1370, 3983, 4572 |
| Bme18I | GGWCC | 8 cut(s) | 110, 127, 914, 1885, 2554, 2620, 3407, 4188 |
| BmgBI | CACGTC | 1 cut(s) | 3433 |
| BmgT120I | GGNCC | 9 cut(s) | 110, 127, 914, 1885, 2554, 2620, 3407, 4188, 4227 |
| BmrFI | CCNGG | 5 cut(s) | 912, 1355, 1370, 3983, 4572 |
| BmtI | GCTAGC | 2 cut(s) | 732, 3231 |
| BpiI | GAAGAC | 6 cut(s) | 59, 723, 1122, 2349, 2976, 4300 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2066, 2098 |
| Bpu14I | TTCGAA | 2 cut(s) | 1531, 3619 |
| BpuEI | CTTGAG | 3 cut(s) | 1216, 1881, 3089 |
| Bsa29I | ATCGAT | 2 cut(s) | 1903, 4464 |
| BsaAI | YACGTR | 1 cut(s) | 1928 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1272, 4140 |
| BsaHI | GRCGYC | 1 cut(s) | 2354 |
| BsaI | GGTCTC | 2 cut(s) | 471, 4266 |
| BsaJI | CCNNGG | 5 cut(s) | 1674, 3982, 4218, 4287, 4439 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 146, 176, 418, 448, 1292, 1322 |
| Bse1I | ACTGG | 7 cut(s) | 291, 433, 1340, 1874, 2622, 2772, 3062 |
| Bse21I | CCTNAGG | 1 cut(s) | 1232 |
| Bse3DI | GCAATG | 4 cut(s) | 723, 3490, 4165, 4213 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1272, 4140 |
| BseBI | CCWGG | 5 cut(s) | 912, 1355, 1370, 3983, 4572 |
| BseCI | ATCGAT | 2 cut(s) | 1903, 4464 |
| BseDI | CCNNGG | 5 cut(s) | 1674, 3982, 4218, 4287, 4439 |
| BseJI | GATNNNNATC | 2 cut(s) | 1272, 4140 |
| BseMI | GCAATG | 4 cut(s) | 723, 3490, 4165, 4213 |
| BseMII | CTCAG | 9 cut(s) | 150, 389, 1664, 2133, 2600, 2646, 2706, 4164, 4380 |
| BseNI | ACTGG | 7 cut(s) | 291, 433, 1340, 1874, 2622, 2772, 3062 |
| BseRI | GAGGAG | 5 cut(s) | 426, 1154, 1300, 1754, 2615 |
| BseSI | GKGCMC | 2 cut(s) | 2008, 2098 |
| BsgI | GTGCAG | 4 cut(s) | 3050, 3864, 3912, 4404 |
| BshFI | GGCC | 2 cut(s) | 4229, 4587 |
| BshNI | GGYRCC | 5 cut(s) | 1100, 2833, 3860, 3908, 3919 |
| BshVI | ATCGAT | 2 cut(s) | 1903, 4464 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1639, 2008, 2401 |
| BslFI | GGGAC | 2 cut(s) | 113, 2567 |
| BsmFI | GGGAC | 2 cut(s) | 113, 2567 |
| BsmI | GAATGC | 1 cut(s) | 3627 |
| BsnI | GGCC | 2 cut(s) | 4229, 4587 |
| Bso31I | GGTCTC | 2 cut(s) | 471, 4266 |
| Bsp119I | TTCGAA | 2 cut(s) | 1531, 3619 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1639, 2008, 2098, 2401 |
| Bsp1407I | TGTACA | 1 cut(s) | 3394 |
| Bsp19I | CCATGG | 1 cut(s) | 4218 |
| BspANI | GGCC | 2 cut(s) | 4229, 4587 |
| BspCNI | CTCAG | 9 cut(s) | 151, 388, 1663, 2134, 2599, 2647, 2707, 4165, 4381 |
| BspDI | ATCGAT | 2 cut(s) | 1903, 4464 |
| BspHI | TCATGA | 3 cut(s) | 60, 2983, 3166 |
| BspMAI | CTGCAG | 5 cut(s) | 928, 1174, 2335, 2473, 2479 |
| BspMI | ACCTGC | 4 cut(s) | 1528, 2338, 2722, 4384 |
| BspOI | GCTAGC | 2 cut(s) | 732, 3231 |
| BspPI | GGATC | 6 cut(s) | 1719, 1732, 2375, 2837, 3171, 3586 |
| BspQI | GCTCTTC | 2 cut(s) | 2389, 3597 |
| BspT104I | TTCGAA | 2 cut(s) | 1531, 3619 |
| BspT107I | GGYRCC | 5 cut(s) | 1100, 2833, 3860, 3908, 3919 |
| BspTI | CTTAAG | 1 cut(s) | 935 |
| BspTNI | GGTCTC | 2 cut(s) | 471, 4266 |
| BsrDI | GCAATG | 4 cut(s) | 723, 3490, 4165, 4213 |
| BsrGI | TGTACA | 1 cut(s) | 3394 |
| BsrI | ACTGG | 7 cut(s) | 291, 433, 1340, 1874, 2622, 2772, 3062 |
| BssECI | CCNNGG | 5 cut(s) | 1674, 3982, 4218, 4287, 4439 |
| BssNI | GRCGYC | 1 cut(s) | 2354 |
| BssSI | CACGAG | 1 cut(s) | 1404 |
| BssT1I | CCWWGG | 2 cut(s) | 1674, 4218 |
| Bst2BI | CACGAG | 1 cut(s) | 1404 |
| Bst2UI | CCWGG | 5 cut(s) | 912, 1355, 1370, 3983, 4572 |
| Bst6I | CTCTTC | 4 cut(s) | 2389, 3066, 3071, 3597 |
| BstACI | GRCGYC | 1 cut(s) | 2354 |
| BstAFI | CTTAAG | 1 cut(s) | 935 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 752, 1178 |
| BstAUI | TGTACA | 1 cut(s) | 3394 |
| BstBAI | YACGTR | 1 cut(s) | 1928 |
| BstBI | TTCGAA | 2 cut(s) | 1531, 3619 |
| BstDSI | CCRYGG | 2 cut(s) | 4218, 4287 |
| BstEII | GGTNACC | 1 cut(s) | 2992 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1985, 2388, 2931 |
| BstH2I | RGCGCY | 2 cut(s) | 1351, 1412 |
| BstHHI | GCGC | 4 cut(s) | 222, 417, 1350, 1411 |
| BstNI | CCWGG | 5 cut(s) | 912, 1355, 1370, 3983, 4572 |
| BstNSI | RCATGY | 5 cut(s) | 93, 674, 1169, 1306, 2189 |
| BstPI | GGTNACC | 1 cut(s) | 2992 |
| BstSCI | CCNGG | 5 cut(s) | 910, 1353, 1368, 3981, 4570 |
| BstSFI | CTRYAG | 6 cut(s) | 682, 924, 1170, 2331, 2469, 2475 |
| BstSLI | GKGCMC | 2 cut(s) | 2008, 2098 |
| BstV2I | GAAGAC | 6 cut(s) | 59, 723, 1122, 2349, 2976, 4300 |
| BstX2I | RGATCY | 2 cut(s) | 1724, 3578 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1916, 3357 |
| BstYI | RGATCY | 2 cut(s) | 1724, 3578 |
| Bsu15I | ATCGAT | 2 cut(s) | 1903, 4464 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1232 |
| BsuRI | GGCC | 2 cut(s) | 4229, 4587 |
| BsuTUI | ATCGAT | 2 cut(s) | 1903, 4464 |
| BtgI | CCRYGG | 2 cut(s) | 4218, 4287 |
| BtgZI | GCGATG | 1 cut(s) | 1067 |
| BtrI | CACGTC | 1 cut(s) | 3433 |
| BtsI | GCAGTG | 2 cut(s) | 2583, 3681 |
| BtsIMutI | CAGTG | 7 cut(s) | 1347, 1845, 2043, 2583, 3681, 3881, 4362 |
| BveI | ACCTGC | 4 cut(s) | 1528, 2338, 2722, 4384 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1847 |
| CciI | TCATGA | 3 cut(s) | 60, 2983, 3166 |
| CfoI | GCGC | 4 cut(s) | 222, 417, 1350, 1411 |
| Cfr13I | GGNCC | 9 cut(s) | 110, 127, 914, 1885, 2554, 2620, 3407, 4188, 4227 |
| ClaI | ATCGAT | 2 cut(s) | 1903, 4464 |
| CseI | GACGC | 1 cut(s) | 2343 |
| CsiI | ACCWGGT | 1 cut(s) | 1368 |
| DraI | TTTAAA | 3 cut(s) | 630, 2887, 4080 |
| Eam1104I | CTCTTC | 4 cut(s) | 2389, 3066, 3071, 3597 |
| EarI | CTCTTC | 4 cut(s) | 2389, 3066, 3071, 3597 |
| EciI | GGCGGA | 1 cut(s) | 1722 |
| Ecl136II | GAGCTC | 1 cut(s) | 2399 |
| Eco130I | CCWWGG | 2 cut(s) | 1674, 4218 |
| Eco147I | AGGCCT | 1 cut(s) | 4587 |
| Eco24I | GRGCYC | 1 cut(s) | 2401 |
| Eco31I | GGTCTC | 2 cut(s) | 471, 4266 |
| Eco32I | GATATC | 2 cut(s) | 3476, 4255 |
| Eco47I | GGWCC | 8 cut(s) | 110, 127, 914, 1885, 2554, 2620, 3407, 4188 |
| Eco47III | AGCGCT | 1 cut(s) | 1349 |
| Eco53kI | GAGCTC | 1 cut(s) | 2399 |
| Eco57I | CTGAAG | 6 cut(s) | 873, 2003, 2807, 2915, 3072, 4152 |
| Eco72I | CACGTG | 1 cut(s) | 1928 |
| Eco81I | CCTNAGG | 1 cut(s) | 1232 |
| Eco91I | GGTNACC | 1 cut(s) | 2992 |
| EcoICRI | GAGCTC | 1 cut(s) | 2399 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1985, 2388, 2931 |
| EcoO109I | RGGNCCY | 2 cut(s) | 110, 2554 |
| EcoO65I | GGTNACC | 1 cut(s) | 2992 |
| EcoRI | GAATTC | 5 cut(s) | 512, 979, 1189, 2048, 3282 |
| EcoRII | CCWGG | 5 cut(s) | 910, 1353, 1368, 3981, 4570 |
| EcoRV | GATATC | 2 cut(s) | 3476, 4255 |
| EcoT14I | CCWWGG | 2 cut(s) | 1674, 4218 |
| EcoT22I | ATGCAT | 2 cut(s) | 272, 477 |
| EcoT38I | GRGCYC | 1 cut(s) | 2401 |
| ErhI | CCWWGG | 2 cut(s) | 1674, 4218 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 567, 599, 735, 767 |
| FaqI | GGGAC | 2 cut(s) | 113, 2567 |
| FauI | CCCGC | 1 cut(s) | 1405 |
| FbaI | TGATCA | 2 cut(s) | 1950, 3214 |
| FblI | GTMKAC | 4 cut(s) | 685, 930, 3113, 3536 |
| FriOI | GRGCYC | 1 cut(s) | 2401 |
| GlaI | GCGC | 4 cut(s) | 221, 416, 1349, 1410 |
| HaeII | RGCGCY | 2 cut(s) | 1351, 1412 |
| HaeIII | GGCC | 2 cut(s) | 4229, 4587 |
| HgaI | GACGC | 1 cut(s) | 2343 |
| HhaI | GCGC | 4 cut(s) | 222, 417, 1350, 1411 |
| Hin1I | GRCGYC | 1 cut(s) | 2354 |
| Hin6I | GCGC | 4 cut(s) | 220, 415, 1348, 1409 |
| HinP1I | GCGC | 4 cut(s) | 220, 415, 1348, 1409 |
| HincII | GTYRAC | 3 cut(s) | 426, 1803, 3568 |
| HindII | GTYRAC | 3 cut(s) | 426, 1803, 3568 |
| HindIII | AAGCTT | 3 cut(s) | 1316, 1378, 2060 |
| HpaI | GTTAAC | 2 cut(s) | 426, 3568 |
| HphI | GGTGA | 9 cut(s) | 1329, 1488, 1500, 2390, 2825, 3006, 3339, 3721, 4379 |
| Hpy99I | CGWCG | 2 cut(s) | 38, 627 |
| HpyCH4IV | ACGT | 8 cut(s) | 1927, 2512, 3019, 3040, 3432, 3633, 3823, 4566 |
| HpySE526I | ACGT | 8 cut(s) | 1927, 2512, 3019, 3040, 3432, 3633, 3823, 4566 |
| Hsp92I | GRCGYC | 1 cut(s) | 2354 |
| HspAI | GCGC | 4 cut(s) | 220, 415, 1348, 1409 |
| KflI | GGGWCCC | 1 cut(s) | 2554 |
| KpnI | GGTACC | 4 cut(s) | 1104, 3864, 3912, 3923 |
| Ksp22I | TGATCA | 2 cut(s) | 1950, 3214 |
| KspAI | GTTAAC | 2 cut(s) | 426, 3568 |
| LguI | GCTCTTC | 2 cut(s) | 2389, 3597 |
| LmnI | GCTCC | 9 cut(s) | 737, 1036, 1237, 1345, 2074, 3136, 3417, 4040, 4360 |
| MabI | ACCWGGT | 1 cut(s) | 1368 |
| MaeII | ACGT | 8 cut(s) | 1927, 2512, 3019, 3040, 3432, 3633, 3823, 4566 |
| MfeI | CAATTG | 7 cut(s) | 66, 840, 878, 1524, 2838, 3999, 4601 |
| MflI | RGATCY | 2 cut(s) | 1724, 3578 |
| MhlI | GDGCHC | 4 cut(s) | 1639, 2008, 2098, 2401 |
| MlyI | GAGTC | 4 cut(s) | 382, 681, 2966, 3191 |
| MmeI | TCCRAC | 2 cut(s) | 3816, 3996 |
| Mph1103I | ATGCAT | 2 cut(s) | 272, 477 |
| MroXI | GAANNNNTTC | 5 cut(s) | 1119, 3677, 4181, 4351, 4566 |
| MslI | CAYNNNNRTG | 8 cut(s) | 669, 1420, 1652, 1709, 3158, 3266, 3402, 3495 |
| MspA1I | CMGCKG | 4 cut(s) | 1762, 2474, 3452, 3926 |
| MspCI | CTTAAG | 1 cut(s) | 935 |
| MspR9I | CCNGG | 5 cut(s) | 912, 1355, 1370, 3983, 4572 |
| MunI | CAATTG | 7 cut(s) | 66, 840, 878, 1524, 2838, 3999, 4601 |
| Mva1269I | GAATGC | 1 cut(s) | 3627 |
| MvaI | CCWGG | 5 cut(s) | 912, 1355, 1370, 3983, 4572 |
| NcoI | CCATGG | 1 cut(s) | 4218 |
| NheI | GCTAGC | 2 cut(s) | 728, 3227 |
| NmuCI | GTSAC | 9 cut(s) | 1277, 1494, 1628, 1865, 3363, 3428, 3601, 3709, 3953 |
| NsiI | ATGCAT | 2 cut(s) | 272, 477 |
| NspI | RCATGY | 5 cut(s) | 93, 674, 1169, 1306, 2189 |
| NspV | TTCGAA | 2 cut(s) | 1531, 3619 |
| PaeI | GCATGC | 1 cut(s) | 2189 |
| PagI | TCATGA | 3 cut(s) | 60, 2983, 3166 |
| PceI | AGGCCT | 1 cut(s) | 4587 |
| PciSI | GCTCTTC | 2 cut(s) | 2389, 3597 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 631, 1909, 3639, 4241 |
| PctI | GAATGC | 1 cut(s) | 3627 |
| PdmI | GAANNNNTTC | 5 cut(s) | 1119, 3677, 4181, 4351, 4566 |
| PflFI | GACNNNGTC | 1 cut(s) | 3965 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 4224 |
| PfoI | TCCNGGA | 1 cut(s) | 1353 |
| PleI | GAGTC | 4 cut(s) | 382, 681, 2966, 3190 |
| PmaCI | CACGTG | 1 cut(s) | 1928 |
| PmlI | CACGTG | 1 cut(s) | 1928 |
| PpsI | GAGTC | 4 cut(s) | 382, 681, 2966, 3190 |
| Ppu21I | YACGTR | 1 cut(s) | 1928 |
| PpuMI | RGGWCCY | 2 cut(s) | 110, 2554 |
| PshBI | ATTAAT | 1 cut(s) | 1053 |
| PsiI | TTATAA | 2 cut(s) | 788, 1470 |
| Psp124BI | GAGCTC | 1 cut(s) | 2401 |
| Psp1406I | AACGTT | 1 cut(s) | 3633 |
| Psp5II | RGGWCCY | 2 cut(s) | 110, 2554 |
| Psp6I | CCWGG | 5 cut(s) | 910, 1353, 1368, 3981, 4570 |
| PspCI | CACGTG | 1 cut(s) | 1928 |
| PspEI | GGTNACC | 1 cut(s) | 2992 |
| PspGI | CCWGG | 5 cut(s) | 910, 1353, 1368, 3981, 4570 |
| PspPI | GGNCC | 9 cut(s) | 110, 127, 914, 1885, 2554, 2620, 3407, 4188, 4227 |
| PspPPI | RGGWCCY | 2 cut(s) | 110, 2554 |
| PstI | CTGCAG | 5 cut(s) | 928, 1174, 2335, 2473, 2479 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1847 |
| PsuI | RGATCY | 2 cut(s) | 1724, 3578 |
| PsyI | GACNNNGTC | 1 cut(s) | 3965 |
| PvuII | CAGCTG | 2 cut(s) | 2474, 3926 |
| RseI | CAYNNNNRTG | 8 cut(s) | 669, 1420, 1652, 1709, 3158, 3266, 3402, 3495 |
| SacI | GAGCTC | 1 cut(s) | 2401 |
| SapI | GCTCTTC | 2 cut(s) | 2389, 3597 |
| Sau96I | GGNCC | 9 cut(s) | 110, 127, 914, 1885, 2554, 2620, 3407, 4188, 4227 |
| ScaI | AGTACT | 1 cut(s) | 332 |
| SchI | GAGTC | 4 cut(s) | 382, 681, 2966, 3191 |
| ScrFI | CCNGG | 5 cut(s) | 912, 1355, 1370, 3983, 4572 |
| SduI | GDGCHC | 4 cut(s) | 1639, 2008, 2098, 2401 |
| SexAI | ACCWGGT | 1 cut(s) | 1368 |
| SfcI | CTRYAG | 6 cut(s) | 682, 924, 1170, 2331, 2469, 2475 |
| SfuI | TTCGAA | 2 cut(s) | 1531, 3619 |
| SinI | GGWCC | 8 cut(s) | 110, 127, 914, 1885, 2554, 2620, 3407, 4188 |
| SmiI | ATTTAAAT | 1 cut(s) | 2887 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 669, 1420, 1652, 1709, 3158, 3266, 3402, 3495 |
| SmlI | CTYRAG | 4 cut(s) | 935, 1195, 1896, 3104 |
| SmoI | CTYRAG | 4 cut(s) | 935, 1195, 1896, 3104 |
| SpeI | ACTAGT | 1 cut(s) | 134 |
| SphI | GCATGC | 1 cut(s) | 2189 |
| SseBI | AGGCCT | 1 cut(s) | 4587 |
| SspI | AATATT | 4 cut(s) | 1108, 1644, 1939, 3616 |
| SstI | GAGCTC | 1 cut(s) | 2401 |
| StuI | AGGCCT | 1 cut(s) | 4587 |
| StyD4I | CCNGG | 5 cut(s) | 910, 1353, 1368, 3981, 4570 |
| StyI | CCWWGG | 2 cut(s) | 1674, 4218 |
| SwaI | ATTTAAAT | 1 cut(s) | 2887 |
| TaiI | ACGT | 8 cut(s) | 1930, 2515, 3022, 3043, 3435, 3636, 3826, 4569 |
| TaqI | TCGA | 7 cut(s) | 1531, 1903, 2870, 3619, 4337, 4464, 4590 |
| TaqII | GACCGA | 1 cut(s) | 4254 |
| TatI | WGTACW | 2 cut(s) | 330, 3394 |
| TauI | GCSGC | 4 cut(s) | 1403, 2465, 3641, 3878 |
| TscAI | CASTG | 7 cut(s) | 1347, 1852, 2050, 2583, 3688, 3888, 4362 |
| TseFI | GTSAC | 9 cut(s) | 1277, 1494, 1628, 1865, 3363, 3428, 3601, 3709, 3953 |
| Tsp45I | GTSAC | 9 cut(s) | 1277, 1494, 1628, 1865, 3363, 3428, 3601, 3709, 3953 |
| TspGWI | ACGGA | 4 cut(s) | 611, 3023, 3149, 4309 |
| TspRI | CASTG | 7 cut(s) | 1347, 1852, 2050, 2583, 3688, 3888, 4362 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3965 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 4224 |
| Vha464I | CTTAAG | 1 cut(s) | 935 |
| VneI | GTGCAC | 1 cut(s) | 2004 |
| VpaK11BI | GGWCC | 8 cut(s) | 110, 127, 914, 1885, 2554, 2620, 3407, 4188 |
| VspI | ATTAAT | 1 cut(s) | 1053 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1985, 2388, 2931 |
| XbaI | TCTAGA | 2 cut(s) | 2542, 3329 |
| XceI | RCATGY | 5 cut(s) | 93, 674, 1169, 1306, 2189 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1422, 2278 |
| XmiI | GTMKAC | 4 cut(s) | 685, 930, 3113, 3536 |
| XmnI | GAANNNNTTC | 5 cut(s) | 1119, 3677, 4181, 4351, 4566 |
| ZrmI | AGTACT | 1 cut(s) | 332 |
| Zsp2I | ATGCAT | 2 cut(s) | 272, 477 |