Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009451

Physical Location & Seq

Genomic Coordinates Forward (+)

11963937 .. 11964512

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G196100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCCAACATTCCAACACATTTTCTATGTTATTATTGTTCTTCTTCTCTTCAATTCAACCCAAACACAATGCCACAGCAAGGGACTTCGACCTGGGAATTCAACTGGGAAAGTATATTTGACCAAGAACATGACACAAGCCCAATTCTCAGAACAGCAATTCATGAAGTGGGTGAGGTTTGTTGGAAGGCTGAAGCACTCTGTGTTCAGGACAGCCAAAAATAAGCTCTTCCCTTCTTACACTCTGCATGTGGCTAAGAACCGTGCTGCTGGAGACTTCACAACCATTCAGGACGTCATTGACTCTCTCCCATTCATCAATCTCTTGAGAGTGGTCATCAAGGTCCATGCAGGGGTCTACACTTGTGTCATTTTGGTACCGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0030312 GO:0044424 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

129

Amino Acids

14.64

Weight (kDa)

10.26

Isoelectric Point (pI)

30.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19730
fragaria_vesca	FvH4_1g06350 FvH4_1g06350 FvH4_1g06350 FvH4_1g06350 FvH4_1g06350
malus_domestica	MD02G1067000.v1.1 MD15G1197500.v1.1
prunus_persica	Prupe.4G196100_v2.0.a1 Prupe.7G218400_v2.0.a1
pyrus_communis	pycom02g05300
rosa_chinensis	RchiOBHm_Chr2g0092041
rosa_laevigata	RLG00000016270
rosa_multiflora	Rmu_co8285047.1_g000001 Rmu_sc0000524.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149530
rosa_rugosa	Rorug02G0022600
rosa_samantha	Rh2AG068100 Rh2BG067500 Rh2CG068800 Rh2DG067100
rosa_wichuraiana	Rw2G005300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	297
Acc65I	GGTACC	1 cut(s)	376
AccB1I	GGYRCC	1 cut(s)	376
AccI	GTMKAC	1 cut(s)	357
AcsI	RAATTY	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	212
AcyI	GRCGYC	1 cut(s)	294
AdeI	CACNNNGTG	1 cut(s)	202
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	2 cut(s)	79, 352
AgsI	TTSAA	3 cut(s)	52, 57, 102
AjnI	CCWGG	1 cut(s)	91
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	97
Asp718I	GGTACC	1 cut(s)	376
AspS9I	GGNCC	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	343
BanI	GGYRCC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	253
BciT130I	CCWGG	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	267
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	93
Bme18I	GGWCC	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	343
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	1 cut(s)	93
BmrI	ACTGGG	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	114
BpmI	CTGGAG	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	346
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 352
Bse1I	ACTGG	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	92
BseLI	CCNNNNNNNGG	2 cut(s)	79, 352
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	253
BshNI	GGYRCC	1 cut(s)	376
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	79, 352
BsmAI	GTCTC	1 cut(s)	267
BsmFI	GGGAC	1 cut(s)	96
BspCNI	CTCAG	1 cut(s)	161
BspHI	TCATGA	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	378
BspQI	GCTCTTC	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	92
BssNI	GRCGYC	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	2 cut(s)	53, 233
BstACI	GRCGYC	1 cut(s)	294
BstDEI	CTNAG	2 cut(s)	148, 255
BstMAI	GTCTC	1 cut(s)	267
BstNI	CCWGG	1 cut(s)	93
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	253
CciI	TCATGA	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	4 cut(s)	130, 163, 248, 347
CviJI	RGCY	5 cut(s)	140, 190, 215, 226, 254
CviKI_1	RGCY	5 cut(s)	140, 190, 215, 226, 254
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	2 cut(s)	148, 255
DraIII	CACNNNGTG	1 cut(s)	202
Eam1104I	CTCTTC	2 cut(s)	53, 233
EarI	CTCTTC	2 cut(s)	53, 233
Eco47I	GGWCC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	212
EcoRI	GAATTC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	91
FaeI	CATG	4 cut(s)	133, 166, 251, 350
FaiI	YATR	6 cut(s)	27, 115, 131, 164, 249, 348
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	4 cut(s)	129, 162, 247, 346
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	267
GluI	GCNGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	291
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	4 cut(s)	133, 166, 251, 350
HinfI	GANTC	1 cut(s)	302
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	4 cut(s)	163, 208, 290, 325
Hpy8I	GTNNAC	1 cut(s)	358
HpyAV	CCTTC	2 cut(s)	180, 243
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	2 cut(s)	247, 350
HpyF3I	CTNAG	2 cut(s)	148, 255
HpySE526I	ACGT	1 cut(s)	294
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	4 cut(s)	133, 166, 251, 350
KpnI	GGTACC	1 cut(s)	380
LguI	GCTCTTC	1 cut(s)	233
LpnPI	CCDG	7 cut(s)	78, 90, 105, 193, 255, 275, 336
Lsp1109I	GCAGC	1 cut(s)	253
MaeII	ACGT	1 cut(s)	294
MboII	GAAGA	4 cut(s)	32, 35, 40, 220
MluCI	AATT	4 cut(s)	52, 97, 143, 158
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	2 cut(s)	37, 163
MnlI	CCTC	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	93
NlaIII	CATG	4 cut(s)	133, 166, 251, 350
NlaIV	GGNNCC	1 cut(s)	378
NspI	RCATGY	1 cut(s)	251
PagI	TCATGA	1 cut(s)	162
PciSI	GCTCTTC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	378
PspPI	GGNCC	1 cut(s)	343
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
SapI	GCTCTTC	1 cut(s)	233
SatI	GCNGC	1 cut(s)	267
Sau96I	GGNCC	1 cut(s)	343
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	1 cut(s)	93
SetI	ASST	5 cut(s)	94, 179, 228, 297, 345
SinI	GGWCC	1 cut(s)	343
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	4 cut(s)	52, 97, 143, 158
StyD4I	CCNGG	1 cut(s)	91
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	1 cut(s)	88
TasI	AATT	4 cut(s)	52, 97, 143, 158
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	3 cut(s)	151, 179, 304
VpaK11BI	GGWCC	1 cut(s)	343
XapI	RAATTY	1 cut(s)	97
XceI	RCATGY	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	357
ZraI	GACGTC	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.