Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8285047.1

Orthogroup ID

OG0009451

Physical Location & Seq

Genomic Coordinates Forward (+)

452 .. 820

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8285047.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgccaacattattccaaagcattttctatgctactcttcttcttcttgtcctaaactcaacacagaccttatgtcacaccaagggaattcggccgggaaactccgccggaaaagtacacctggccaagaacatgacccgagcccaattctcggagcaacaattcatgaagtgggtcaagtttgttgggagactcaaacactcggtttataagaacgcgaagaacaagctcttcccctcttacacactcaatgtggctaagaacccttcagggggagactttaccaaaattcaggacgccattgattctcttccgttcatcaatctcgtcagagtcgtcatcaaggtccatgcaggtgtctacaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0030312 GO:0044424 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

122

Amino Acids

13.73

Weight (kDa)

10.26

Isoelectric Point (pI)

30.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19730
fragaria_vesca	FvH4_1g06350 FvH4_1g06350 FvH4_1g06350 FvH4_1g06350 FvH4_1g06350
malus_domestica	MD02G1067000.v1.1 MD15G1197500.v1.1
prunus_persica	Prupe.4G196100_v2.0.a1 Prupe.7G218400_v2.0.a1
pyrus_communis	pycom02g05300
rosa_chinensis	RchiOBHm_Chr2g0092041
rosa_laevigata	RLG00000016270
rosa_multiflora	Rmu_co8285047.1_g000001 Rmu_sc0000524.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149530
rosa_rugosa	Rorug02G0022600
rosa_samantha	Rh2AG068100 Rh2BG067500 Rh2CG068800 Rh2DG067100
rosa_wichuraiana	Rw2G005300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	210
AarI	CACCTGC	1 cut(s)	344
Acc36I	ACCTGC	1 cut(s)	344
AccI	GTMKAC	1 cut(s)	360
AccII	CGCG	1 cut(s)	218
AciI	CCGC	1 cut(s)	105
AcoI	YGGCCR	2 cut(s)	92, 123
AcsI	RAATTY	2 cut(s)	87, 288
AcuI	CTGAAG	1 cut(s)	252
AcyI	GRCGYC	1 cut(s)	297
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	3 cut(s)	151, 271, 272
AhdI	GACNNNNNGTC	1 cut(s)	72
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
Alw26I	GTCTC	2 cut(s)	184, 270
Ama87I	CYCGRG	1 cut(s)	138
AoxI	GGCC	2 cut(s)	92, 123
ApoI	RAATTY	2 cut(s)	87, 288
AspS9I	GGNCC	1 cut(s)	346
AsuC2I	CCSGG	1 cut(s)	96
AvaI	CYCGRG	1 cut(s)	138
AvaII	GGWCC	1 cut(s)	346
BalI	TGGCCA	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	145
BciT130I	CCWGG	1 cut(s)	122
BcnI	CCSGG	1 cut(s)	96
BcoDI	GTCTC	2 cut(s)	184, 270
BfuAI	ACCTGC	1 cut(s)	344
Bme1390I	CCNGG	2 cut(s)	96, 122
Bme18I	GGWCC	1 cut(s)	346
BmeRI	GACNNNNNGTC	1 cut(s)	72
BmeT110I	CYCGRG	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	346
BmrFI	CCNGG	2 cut(s)	96, 122
BpuMI	CCSGG	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 271, 272
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	81
BseLI	CCNNNNNNNGG	3 cut(s)	151, 271, 272
BseX3I	CGGCCG	1 cut(s)	92
Bsh1236I	CGCG	1 cut(s)	218
Bsh1285I	CGRYCG	1 cut(s)	95
BshFI	GGCC	2 cut(s)	94, 125
BsiEI	CGRYCG	1 cut(s)	95
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	95, 108
BslI	CCNNNNNNNGG	3 cut(s)	151, 271, 272
BsmAI	GTCTC	2 cut(s)	184, 270
BsnI	GGCC	2 cut(s)	94, 125
BsoBI	CYCGRG	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	145
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	2 cut(s)	94, 125
BspFNI	CGCG	1 cut(s)	218
BspHI	TCATGA	1 cut(s)	165
BspMI	ACCTGC	1 cut(s)	344
BspQI	GCTCTTC	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	81
BssNI	GRCGYC	1 cut(s)	297
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	122
Bst6I	CTCTTC	3 cut(s)	42, 236, 315
BstACI	GRCGYC	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	258
BstFNI	CGCG	1 cut(s)	218
BstMAI	GTCTC	2 cut(s)	184, 270
BstMCI	CGRYCG	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	2 cut(s)	94, 120
BstUI	CGCG	1 cut(s)	218
BstZI	CGGCCG	1 cut(s)	92
BsuRI	GGCC	2 cut(s)	94, 125
BveI	ACCTGC	1 cut(s)	344
CciI	TCATGA	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	346
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	3 cut(s)	133, 166, 350
CviJI	RGCY	5 cut(s)	94, 125, 143, 229, 257
CviKI_1	RGCY	5 cut(s)	94, 125, 143, 229, 257
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	1 cut(s)	258
DriI	GACNNNNNGTC	1 cut(s)	72
EaeI	YGGCCR	2 cut(s)	92, 123
EagI	CGGCCG	1 cut(s)	92
Eam1104I	CTCTTC	3 cut(s)	42, 236, 315
Eam1105I	GACNNNNNGTC	1 cut(s)	72
EarI	CTCTTC	3 cut(s)	42, 236, 315
EciI	GGCGGA	1 cut(s)	94
EclXI	CGGCCG	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	346
Eco52I	CGGCCG	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	252
Eco88I	CYCGRG	1 cut(s)	138
EcoRI	GAATTC	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	3 cut(s)	136, 169, 353
FaiI	YATR	6 cut(s)	30, 73, 134, 167, 210, 351
FatI	CATG	3 cut(s)	132, 165, 349
FblI	GTMKAC	1 cut(s)	360
FriOI	GRGCYC	1 cut(s)	145
HaeIII	GGCC	2 cut(s)	94, 125
HapII	CCGG	2 cut(s)	95, 108
HgaI	GACGC	1 cut(s)	305
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	3 cut(s)	136, 169, 353
HinfI	GANTC	3 cut(s)	192, 305, 333
HpaII	CCGG	2 cut(s)	95, 108
Hpy166II	GTNNAC	2 cut(s)	118, 361
Hpy188I	TCNGA	2 cut(s)	154, 332
Hpy188III	TCNNGA	2 cut(s)	166, 293
Hpy8I	GTNNAC	2 cut(s)	118, 361
HpyAV	CCTTC	1 cut(s)	276
HpyCH4V	TGCA	1 cut(s)	353
HpyF3I	CTNAG	1 cut(s)	258
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	3 cut(s)	136, 169, 353
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	7 cut(s)	107, 108, 121, 134, 255, 278, 339
MaeIII	GTNAC	1 cut(s)	74
MboII	GAAGA	6 cut(s)	29, 32, 35, 223, 232, 302
MhlI	GDGCHC	1 cut(s)	145
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	4 cut(s)	87, 146, 161, 288
MluNI	TGGCCA	1 cut(s)	125
MlyI	GAGTC	2 cut(s)	186, 342
MnlI	CCTC	1 cut(s)	247
Mox20I	TGGCCA	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	125
MslI	CAYNNNNRTG	1 cut(s)	354
Msp20I	TGGCCA	1 cut(s)	125
MspI	CCGG	2 cut(s)	95, 108
MspR9I	CCNGG	2 cut(s)	96, 122
MvaI	CCWGG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	218
NciI	CCSGG	1 cut(s)	96
NlaIII	CATG	3 cut(s)	136, 169, 353
NmuCI	GTSAC	1 cut(s)	74
PagI	TCATGA	1 cut(s)	165
PaqCI	CACCTGC	1 cut(s)	344
PciSI	GCTCTTC	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	305
PleI	GAGTC	2 cut(s)	186, 341
PpsI	GAGTC	2 cut(s)	186, 341
PsiI	TTATAA	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	346
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	354
SapI	GCTCTTC	1 cut(s)	236
Sau96I	GGNCC	1 cut(s)	346
SchI	GAGTC	2 cut(s)	186, 342
ScrFI	CCNGG	2 cut(s)	96, 122
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	5 cut(s)	71, 123, 231, 348, 358
SinI	GGWCC	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	354
Sse9I	AATT	4 cut(s)	87, 146, 161, 288
SsiI	CCGC	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	94, 120
StyI	CCWWGG	1 cut(s)	81
TasI	AATT	4 cut(s)	87, 146, 161, 288
TatI	WGTACW	1 cut(s)	115
TfiI	GAWTC	1 cut(s)	305
TseFI	GTSAC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	3 cut(s)	154, 182, 307
TspGWI	ACGGA	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	2 cut(s)	87, 288
XmiI	GTMKAC	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.