Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009451

Physical Location & Seq

Genomic Coordinates Reverse (-)

3548710 .. 3549688

Gene Structure 979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTCAACATTATTCCAACACATTTTCTATGTTCTTATTCTTCTTCTCCTCCTCTATTCAACCCCATCACAGTGCCATTCGAAGGGACTCCGACCGGGAAATCCGGCCGGAAACGTGCACTTAACGAAGAACATGACTCGAGCCCAATTATCAGAACAGCAATTCATGAAGTGGGTTAAGTTTGTTGGAAGCCTCAAACACTCTGTTTTCAAAGCAGCAAAGAACAAGCTCTCTCCTTCTTTCACTCTGCATGTGGACAAGAATCCTAATGCAGGAGACTTCACAAAAATCCAAGACGCCATTGATTCTCTCCCCTTCATCAATCTCGTGAGAGTTGTTATCAAAGTACATGCCGGAATATACACGGAGAAGGTAAATATACCTCCATTGAAATCATTTATAACCATAGAAGGAGCAGGGGCAGATAAAACCATTGTTCAATGGGGAGACACAGCTCAAACACCATCTGGTCCAAAAAAACAACCCATGGGGACTTTTAATTCTGCAACTTTTGCTGTCAATTCCCCTTATTTTATTGCCAGAAACATTACATTTAAGAACACTACACCAGTCCCCAAACCAGGAGCAATTGGGAAGCAGGCAGTGGCGTTTAGAATATCAGCTGATACAGCAGCTTTCTGGGGGTGTAGTTTTTTGGGGGCACAAGACACACTCTATGATCGATTTGGGAAGGCATTATTACAAGGATTGCTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0030312 GO:0044424 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

240

Amino Acids

26.25

Weight (kDa)

9.88

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19730
fragaria_vesca	FvH4_1g06350 FvH4_1g06350 FvH4_1g06350 FvH4_1g06350 FvH4_1g06350
malus_domestica	MD02G1067000.v1.1 MD15G1197500.v1.1
prunus_persica	Prupe.4G196100_v2.0.a1 Prupe.7G218400_v2.0.a1
pyrus_communis	pycom02g05300
rosa_chinensis	RchiOBHm_Chr2g0092041
rosa_laevigata	RLG00000016270
rosa_multiflora	Rmu_co8285047.1_g000001 Rmu_sc0000524.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149530
rosa_rugosa	Rorug02G0022600
rosa_samantha	Rh2AG068100 Rh2BG067500 Rh2CG068800 Rh2DG067100
rosa_wichuraiana	Rw2G005300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	401
AcoI	YGGCCR	1 cut(s)	105
AcyI	GRCGYC	1 cut(s)	297
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	3 cut(s)	82, 272, 581
AgsI	TTSAA	4 cut(s)	60, 211, 391, 440
AjnI	CCWGG	1 cut(s)	580
AluBI	AGCT	4 cut(s)	229, 455, 623, 635
AluI	AGCT	4 cut(s)	229, 455, 623, 635
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	2 cut(s)	270, 441
Alw44I	GTGCAC	1 cut(s)	116
Ama87I	CYCGRG	1 cut(s)	138
AoxI	GGCC	1 cut(s)	105
ApaLI	GTGCAC	1 cut(s)	116
ApeKI	GCWGC	2 cut(s)	215, 632
AspS9I	GGNCC	1 cut(s)	470
AsuC2I	CCSGG	1 cut(s)	96
AsuII	TTCGAA	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	138
AvaII	GGWCC	1 cut(s)	470
BaeGI	GKGCMC	2 cut(s)	120, 664
BanII	GRGCYC	1 cut(s)	145
BauI	CACGAG	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	227, 644
BccI	CCATC	2 cut(s)	73, 472
BciT130I	CCWGG	1 cut(s)	582
BcnI	CCSGG	1 cut(s)	96
BcoDI	GTCTC	2 cut(s)	270, 441
BisI	GCNGC	2 cut(s)	216, 633
BlsI	GCNGC	2 cut(s)	217, 634
Bme1390I	CCNGG	2 cut(s)	96, 582
Bme18I	GGWCC	1 cut(s)	470
BmeT110I	CYCGRG	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	470
BmrFI	CCNGG	2 cut(s)	96, 582
Bpu14I	TTCGAA	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	96
Bsa29I	ATCGAT	1 cut(s)	682
BsaHI	GRCGYC	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	486
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 272, 581
Bse1I	ACTGG	1 cut(s)	569
BseBI	CCWGG	1 cut(s)	582
BseCI	ATCGAT	1 cut(s)	682
BseDI	CCNNGG	1 cut(s)	486
BseLI	CCNNNNNNNGG	3 cut(s)	82, 272, 581
BseNI	ACTGG	1 cut(s)	569
BseRI	GAGGAG	2 cut(s)	38, 41
BseSI	GKGCMC	2 cut(s)	120, 664
BseX3I	CGGCCG	1 cut(s)	105
BseXI	GCAGC	2 cut(s)	227, 644
Bsh1285I	CGRYCG	2 cut(s)	95, 108
BshFI	GGCC	1 cut(s)	107
BshVI	ATCGAT	1 cut(s)	682
BsiEI	CGRYCG	2 cut(s)	95, 108
BsiHKAI	GWGCWC	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	4 cut(s)	95, 104, 108, 354
BslFI	GGGAC	3 cut(s)	99, 505, 557
BslI	CCNNNNNNNGG	3 cut(s)	82, 272, 581
BsmAI	GTCTC	2 cut(s)	270, 441
BsmFI	GGGAC	3 cut(s)	99, 505, 557
BsnI	GGCC	1 cut(s)	107
BsoBI	CYCGRG	1 cut(s)	138
Bsp119I	TTCGAA	1 cut(s)	80
Bsp1286I	GDGCHC	3 cut(s)	120, 145, 664
Bsp143I	GATC	1 cut(s)	679
Bsp19I	CCATGG	1 cut(s)	486
BspANI	GGCC	1 cut(s)	107
BspDI	ATCGAT	1 cut(s)	682
BspHI	TCATGA	1 cut(s)	165
BspT104I	TTCGAA	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	569
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	1 cut(s)	679
BssNI	GRCGYC	1 cut(s)	297
BssSI	CACGAG	1 cut(s)	326
BssT1I	CCWWGG	1 cut(s)	486
Bst2BI	CACGAG	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	582
Bst4CI	ACNGT	1 cut(s)	72
BstACI	GRCGYC	1 cut(s)	297
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstBI	TTCGAA	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	600
BstDSI	CCRYGG	1 cut(s)	486
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstKTI	GATC	1 cut(s)	682
BstMAI	GTCTC	2 cut(s)	270, 441
BstMBI	GATC	1 cut(s)	679
BstMCI	CGRYCG	2 cut(s)	95, 108
BstMWI	GCNNNNNNNGC	2 cut(s)	512, 629
BstNI	CCWGG	1 cut(s)	582
BstNSI	RCATGY	2 cut(s)	254, 353
BstSCI	CCNGG	2 cut(s)	94, 580
BstSLI	GKGCMC	2 cut(s)	120, 664
BstV1I	GCAGC	2 cut(s)	227, 644
BstZI	CGGCCG	1 cut(s)	105
Bsu15I	ATCGAT	1 cut(s)	682
BsuRI	GGCC	1 cut(s)	107
BsuTUI	ATCGAT	1 cut(s)	682
BtgI	CCRYGG	1 cut(s)	486
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	2 cut(s)	77, 609
Cac8I	GCNNGC	1 cut(s)	600
CciI	TCATGA	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	470
ClaI	ATCGAT	1 cut(s)	682
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	5 cut(s)	133, 166, 251, 350, 487
CviJI	RGCY	7 cut(s)	107, 143, 192, 229, 455, 623, 635
CviKI_1	RGCY	7 cut(s)	107, 143, 192, 229, 455, 623, 635
CviQI	GTAC	1 cut(s)	347
DpnI	GATC	1 cut(s)	681
DpnII	GATC	1 cut(s)	679
EaeI	YGGCCR	1 cut(s)	105
EagI	CGGCCG	1 cut(s)	105
EclXI	CGGCCG	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	486
Eco24I	GRGCYC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	470
Eco52I	CGGCCG	1 cut(s)	105
Eco88I	CYCGRG	1 cut(s)	138
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	580
EcoT14I	CCWWGG	1 cut(s)	486
EcoT38I	GRGCYC	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	5 cut(s)	136, 169, 254, 353, 490
FaqI	GGGAC	3 cut(s)	99, 505, 557
FatI	CATG	5 cut(s)	132, 165, 250, 349, 486
Fnu4HI	GCNGC	2 cut(s)	216, 633
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	2 cut(s)	216, 633
GluI	GCNGC	2 cut(s)	216, 633
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	4 cut(s)	95, 104, 108, 354
HgaI	GACGC	1 cut(s)	305
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	5 cut(s)	136, 169, 254, 353, 490
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	4 cut(s)	87, 136, 262, 305
HpaII	CCGG	4 cut(s)	95, 104, 108, 354
Hpy166II	GTNNAC	3 cut(s)	6, 118, 256
Hpy188I	TCNGA	2 cut(s)	92, 154
Hpy188III	TCNNGA	2 cut(s)	166, 328
Hpy8I	GTNNAC	3 cut(s)	6, 118, 256
HpyAV	CCTTC	6 cut(s)	76, 246, 325, 364, 404, 685
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	4 cut(s)	118, 250, 272, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	512, 629
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	5 cut(s)	136, 169, 254, 353, 490
Kzo9I	GATC	1 cut(s)	679
LmnI	GCTCC	2 cut(s)	413, 584
Lsp1109I	GCAGC	2 cut(s)	227, 644
MaeII	ACGT	1 cut(s)	114
MalI	GATC	1 cut(s)	681
MboI	GATC	1 cut(s)	679
MboII	GAAGA	3 cut(s)	32, 35, 139
MfeI	CAATTG	1 cut(s)	588
MhlI	GDGCHC	3 cut(s)	120, 145, 664
MluCI	AATT	5 cut(s)	146, 161, 499, 520, 588
MlyI	GAGTC	2 cut(s)	81, 130
MmeI	TCCRAC	3 cut(s)	40, 115, 166
MnlI	CCTC	4 cut(s)	59, 62, 203, 393
MseI	TTAA	4 cut(s)	122, 177, 498, 555
MslI	CAYNNNNRTG	1 cut(s)	70
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	4 cut(s)	95, 104, 108, 354
MspR9I	CCNGG	2 cut(s)	96, 582
MunI	CAATTG	1 cut(s)	588
MvaI	CCWGG	1 cut(s)	582
MwoI	GCNNNNNNNGC	2 cut(s)	512, 629
NciI	CCSGG	1 cut(s)	96
NcoI	CCATGG	1 cut(s)	486
NdeII	GATC	1 cut(s)	679
NlaIII	CATG	5 cut(s)	136, 169, 254, 353, 490
NspI	RCATGY	2 cut(s)	254, 353
NspV	TTCGAA	1 cut(s)	80
PaeR7I	CTCGAG	1 cut(s)	138
PagI	TCATGA	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	262, 305
PkrI	GCNGC	2 cut(s)	217, 634
PleI	GAGTC	2 cut(s)	81, 130
PpsI	GAGTC	2 cut(s)	81, 130
PsiI	TTATAA	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	580
PspGI	CCWGG	1 cut(s)	580
PspPI	GGNCC	1 cut(s)	470
PspXI	VCTCGAGB	1 cut(s)	138
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	70
SaqAI	TTAA	4 cut(s)	122, 177, 498, 555
SatI	GCNGC	2 cut(s)	216, 633
Sau3AI	GATC	1 cut(s)	679
Sau96I	GGNCC	1 cut(s)	470
SchI	GAGTC	2 cut(s)	81, 130
ScrFI	CCNGG	2 cut(s)	96, 582
SduI	GDGCHC	3 cut(s)	120, 145, 664
SetI	ASST	7 cut(s)	117, 231, 375, 385, 457, 625, 637
Sfr274I	CTCGAG	1 cut(s)	138
SfuI	TTCGAA	1 cut(s)	80
SinI	GGWCC	1 cut(s)	470
SlaI	CTCGAG	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	70
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
Sse9I	AATT	5 cut(s)	146, 161, 499, 520, 588
StyD4I	CCNGG	2 cut(s)	94, 580
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	1 cut(s)	72
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	3 cut(s)	80, 139, 682
TasI	AATT	5 cut(s)	146, 161, 499, 520, 588
TatI	WGTACW	1 cut(s)	346
TfiI	GAWTC	2 cut(s)	262, 305
Tru1I	TTAA	4 cut(s)	122, 177, 498, 555
Tru9I	TTAA	4 cut(s)	122, 177, 498, 555
TscAI	CASTG	2 cut(s)	77, 609
TseI	GCWGC	2 cut(s)	215, 632
TspDTI	ATGAA	3 cut(s)	154, 182, 307
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	2 cut(s)	77, 609
VneI	GTGCAC	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	470
XagI	CCTNNNNNAGG	1 cut(s)	270
XceI	RCATGY	2 cut(s)	254, 353
XhoI	CTCGAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.