Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009451

Physical Location & Seq

Genomic Coordinates Forward (+)

19650092 .. 19653129

Gene Structure 3038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G218400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGCCAACATTCCAACACATTTTCTATGTTATTATTGTTCTTCTTCTCTTCAATTCAACCAAAACACAATGCCACAGCAAGGGACTTCGACCTGGGAATTCAGCTGGGAAAGTACATTTGACCAAGAACATGACACAAGCCCAATTCTCAGAACAGCAATTCATGAAATGGGTGAGGTTTGTTGGAAGGCTGAAGCACTCTGTGTTCAAGACAGCCAAAAATAAGCTCTTCCCTTCTTACACTCTGCATGTGGCTAAGAACCGTGCTGCTGGAGACTTCACAACCATTCAGGACGCCATTGACTCTCTCCCATTCATCAATCTCTTGAGAGTGGTCATCAAGGTCCATGCAGGGGTCTACACGGAGAAGGTTAATATACCTCCATTGAAATCATATATAACCATAGAAGGAGCAGGGGCAGACAAAACAATTGTCCAATGGGGAGACACTGCTCAAACACCATCTGGTCCAAAGAAACAACCTATGGGGACTTACAATTCTGCAACTTTTGCTGTGAATTCCCCTTATTTCATTGCCAGGAACATCACATTCAAGAACACTACACCAGTCCCAGCACCAGGAGCAATTGGTAAGCAGGCAGTGGCATTTAGAATATCAGCAGATACAGCAGCCTTCTTGGGGTGCAAATTCTTGGGGGCACAAGATACACTCTATGATCATTTGGGAAGGCATTATTACAAGGATTGCTACATTGAAGGTTCAGTGGACTTCATCTTTGGAAATGGACTCTCCCTATTTGAGGGATGTCACGTGCACGCAATAGCACAGAACATAGGAGCACTCACAGCACAAGGCAGGAGCAGCCTGTTGGAGGAAACGGGCTTCTCATTTGTAAACTGTAAGGTCACGGGCTCAGGAGCACTCTATCTTGGTAGGGCATGGGGTCCTTTCTCCAGGGTGGTCTTCGCATACACATATATGGACAACATTATCATGCCTAAAGGCTGGTATAACTGGGGTGACCCTAACCGTGAAATGACTGTGTTTTATGGGCAATACAAGTGCACTGGACCAGGAGCTCGCTTTGCAGGGAGGGTTTCATGGTCTAGAGAGCTCACTGATGAGGAAGCCAAGCCTTTTATTTCCCTTACCTTCATAGATGGCTCTGAGTGGATCAAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0030312 GO:0044424 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

382

Amino Acids

42.32

Weight (kDa)

9.42

Isoelectric Point (pI)

34.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19730
fragaria_vesca	FvH4_1g06350 FvH4_1g06350 FvH4_1g06350 FvH4_1g06350 FvH4_1g06350
malus_domestica	MD02G1067000.v1.1 MD15G1197500.v1.1
prunus_persica	Prupe.4G196100_v2.0.a1 Prupe.7G218400_v2.0.a1
pyrus_communis	pycom02g05300
rosa_chinensis	RchiOBHm_Chr2g0092041
rosa_laevigata	RLG00000016270
rosa_multiflora	Rmu_co8285047.1_g000001 Rmu_sc0000524.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149530
rosa_rugosa	Rorug02G0022600
rosa_samantha	Rh2AG068100 Rh2BG067500 Rh2CG068800 Rh2DG067100
rosa_wichuraiana	Rw2G005300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	357
AclWI	GGATC	1 cut(s)	1142
AcsI	RAATTY	3 cut(s)	97, 517, 647
AcuI	CTGAAG	1 cut(s)	212
AcvI	CACGTG	1 cut(s)	772
AcyI	GRCGYC	1 cut(s)	294
AdeI	CACNNNGTG	1 cut(s)	202
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	6 cut(s)	79, 352, 578, 639, 760, 832
AgsI	TTSAA	6 cut(s)	52, 57, 208, 388, 553, 716
AjnI	CCWGG	5 cut(s)	91, 536, 577, 914, 1033
AluBI	AGCT	4 cut(s)	104, 226, 1040, 1075
AluI	AGCT	4 cut(s)	104, 226, 1040, 1075
Alw21I	GWGCWC	6 cut(s)	777, 802, 883, 1028, 1042, 1077
Alw26I	GTCTC	2 cut(s)	267, 438
Alw44I	GTGCAC	2 cut(s)	773, 1024
AlwI	GGATC	1 cut(s)	1142
ApaLI	GTGCAC	2 cut(s)	773, 1024
ApeKI	GCWGC	3 cut(s)	266, 629, 822
ApoI	RAATTY	3 cut(s)	97, 517, 647
ArsI	GACNNNNNNTTYG	4 cut(s)	417, 449, 719, 751
AspS9I	GGNCC	4 cut(s)	343, 467, 905, 1031
AsuHPI	GGTGA	2 cut(s)	184, 992
AvaII	GGWCC	4 cut(s)	343, 467, 905, 1031
BaeGI	GKGCMC	3 cut(s)	661, 777, 1028
BanII	GRGCYC	3 cut(s)	875, 1042, 1077
BbrPI	CACGTG	1 cut(s)	772
BbsI	GAAGAC	1 cut(s)	916
Bbv12I	GWGCWC	6 cut(s)	777, 802, 883, 1028, 1042, 1077
BbvI	GCAGC	3 cut(s)	253, 641, 834
BccI	CCATC	2 cut(s)	469, 1115
BciT130I	CCWGG	5 cut(s)	93, 538, 579, 916, 1035
BclI	TGATCA	1 cut(s)	676
BcoDI	GTCTC	2 cut(s)	267, 438
BfaI	CTAG	1 cut(s)	1068
BisI	GCNGC	3 cut(s)	267, 630, 823
BlsI	GCNGC	3 cut(s)	268, 631, 824
Bme1390I	CCNGG	5 cut(s)	93, 538, 579, 916, 1035
Bme18I	GGWCC	4 cut(s)	343, 467, 905, 1031
BmgT120I	GGNCC	4 cut(s)	343, 467, 905, 1031
BmiI	GGNNCC	1 cut(s)	906
BmrFI	CCNGG	5 cut(s)	93, 538, 579, 916, 1035
BmrI	ACTGGG	1 cut(s)	985
BmuI	ACTGGG	1 cut(s)	985
BpiI	GAAGAC	1 cut(s)	916
BpmI	CTGGAG	2 cut(s)	291, 898
Bpu10I	CCTNAGC	1 cut(s)	874
BpuEI	CTTGAG	1 cut(s)	346
BsaAI	YACGTR	1 cut(s)	772
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	92, 915
Bsc4I	CCNNNNNNNGG	6 cut(s)	79, 352, 578, 639, 760, 832
Bse1I	ACTGG	3 cut(s)	566, 980, 1033
Bse3DI	GCAATG	1 cut(s)	531
BseBI	CCWGG	5 cut(s)	93, 538, 579, 916, 1035
BseDI	CCNNGG	2 cut(s)	92, 915
BseGI	GGATG	1 cut(s)	770
BseLI	CCNNNNNNNGG	6 cut(s)	79, 352, 578, 639, 760, 832
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	3 cut(s)	162, 888, 1119
BseNI	ACTGG	3 cut(s)	566, 980, 1033
BseSI	GKGCMC	3 cut(s)	661, 777, 1028
BseXI	GCAGC	3 cut(s)	253, 641, 834
BseYI	CCCAGC	2 cut(s)	104, 571
BsiHKAI	GWGCWC	6 cut(s)	777, 802, 883, 1028, 1042, 1077
BslFI	GGGAC	3 cut(s)	96, 502, 554
BslI	CCNNNNNNNGG	6 cut(s)	79, 352, 578, 639, 760, 832
BsmAI	GTCTC	2 cut(s)	267, 438
BsmFI	GGGAC	3 cut(s)	96, 502, 554
Bsp1286I	GDGCHC	8 cut(s)	661, 777, 802, 875, 883, 1028, 1042, 1077
Bsp143I	GATC	2 cut(s)	676, 1134
BspCNI	CTCAG	3 cut(s)	161, 887, 1120
BspHI	TCATGA	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	906
BspPI	GGATC	1 cut(s)	1142
BspQI	GCTCTTC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	3 cut(s)	566, 980, 1033
BssECI	CCNNGG	2 cut(s)	92, 915
BssMI	GATC	2 cut(s)	676, 1134
BssNI	GRCGYC	1 cut(s)	294
Bst2UI	CCWGG	5 cut(s)	93, 538, 579, 916, 1035
Bst4CI	ACNGT	4 cut(s)	263, 860, 992, 1003
Bst6I	CTCTTC	2 cut(s)	53, 233
BstACI	GRCGYC	1 cut(s)	294
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstBAI	YACGTR	1 cut(s)	772
BstC8I	GCNNGC	3 cut(s)	597, 777, 1042
BstDEI	CTNAG	4 cut(s)	148, 255, 874, 1128
BstEII	GGTNACC	1 cut(s)	980
BstENI	CCTNNNNNAGG	2 cut(s)	758, 830
BstF5I	GGATG	1 cut(s)	770
BstKTI	GATC	2 cut(s)	679, 1137
BstMAI	GTCTC	2 cut(s)	267, 438
BstMBI	GATC	2 cut(s)	676, 1134
BstMWI	GCNNNNNNNGC	6 cut(s)	509, 581, 626, 806, 822, 1046
BstNI	CCWGG	5 cut(s)	93, 538, 579, 916, 1035
BstNSI	RCATGY	1 cut(s)	251
BstPI	GGTNACC	1 cut(s)	980
BstSCI	CCNGG	5 cut(s)	91, 536, 577, 914, 1033
BstSLI	GKGCMC	3 cut(s)	661, 777, 1028
BstV1I	GCAGC	3 cut(s)	253, 641, 834
BstV2I	GAAGAC	1 cut(s)	916
BtsCI	GGATG	1 cut(s)	770
BtsI	GCAGTG	2 cut(s)	447, 606
BtsIMutI	CAGTG	5 cut(s)	447, 606, 729, 1026, 1077
Cac8I	GCNNGC	3 cut(s)	597, 777, 1042
CciI	TCATGA	1 cut(s)	162
Cfr13I	GGNCC	4 cut(s)	343, 467, 905, 1031
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	113
CviAII	CATG	7 cut(s)	130, 163, 248, 347, 900, 955, 1062
CviQI	GTAC	1 cut(s)	113
DdeI	CTNAG	4 cut(s)	148, 255, 874, 1128
DpnI	GATC	2 cut(s)	678, 1136
DpnII	GATC	2 cut(s)	676, 1134
DraIII	CACNNNGTG	1 cut(s)	202
Eam1104I	CTCTTC	2 cut(s)	53, 233
EarI	CTCTTC	2 cut(s)	53, 233
Ecl136II	GAGCTC	2 cut(s)	1040, 1075
Eco24I	GRGCYC	3 cut(s)	875, 1042, 1077
Eco47I	GGWCC	4 cut(s)	343, 467, 905, 1031
Eco53kI	GAGCTC	2 cut(s)	1040, 1075
Eco57I	CTGAAG	1 cut(s)	212
Eco72I	CACGTG	1 cut(s)	772
Eco91I	GGTNACC	1 cut(s)	980
EcoICRI	GAGCTC	2 cut(s)	1040, 1075
EcoNI	CCTNNNNNAGG	2 cut(s)	758, 830
EcoO109I	RGGNCCY	1 cut(s)	905
EcoO65I	GGTNACC	1 cut(s)	980
EcoRI	GAATTC	2 cut(s)	97, 517
EcoRII	CCWGG	5 cut(s)	91, 536, 577, 914, 1033
EcoT38I	GRGCYC	3 cut(s)	875, 1042, 1077
FaeI	CATG	7 cut(s)	133, 166, 251, 350, 903, 958, 1065
FaqI	GGGAC	3 cut(s)	96, 502, 554
FatI	CATG	7 cut(s)	129, 162, 247, 346, 899, 954, 1061
FbaI	TGATCA	1 cut(s)	676
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	3 cut(s)	267, 630, 823
FokI	GGATG	1 cut(s)	777
FriOI	GRGCYC	3 cut(s)	875, 1042, 1077
Fsp4HI	GCNGC	3 cut(s)	267, 630, 823
FspBI	CTAG	1 cut(s)	1068
GluI	GCNGC	3 cut(s)	267, 630, 823
GsaI	CCCAGC	2 cut(s)	108, 575
GsuI	CTGGAG	2 cut(s)	291, 898
HgaI	GACGC	1 cut(s)	302
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	7 cut(s)	133, 166, 251, 350, 903, 958, 1065
HinfI	GANTC	2 cut(s)	302, 747
HphI	GGTGA	2 cut(s)	184, 992
Hpy166II	GTNNAC	5 cut(s)	358, 727, 775, 856, 1026
Hpy188I	TCNGA	2 cut(s)	151, 1129
Hpy188III	TCNNGA	7 cut(s)	163, 208, 290, 325, 553, 876, 1068
Hpy8I	GTNNAC	5 cut(s)	358, 727, 775, 856, 1026
HpyAV	CCTTC	8 cut(s)	180, 243, 361, 401, 643, 681, 710, 1123
HpyCH4III	ACNGT	4 cut(s)	263, 860, 992, 1003
HpyCH4IV	ACGT	1 cut(s)	771
HpyCH4V	TGCA	7 cut(s)	247, 350, 503, 645, 775, 1026, 1049
HpyF10VI	GCNNNNNNNGC	6 cut(s)	509, 581, 626, 806, 822, 1046
HpyF3I	CTNAG	4 cut(s)	148, 255, 874, 1128
HpySE526I	ACGT	1 cut(s)	771
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	7 cut(s)	133, 166, 251, 350, 903, 958, 1065
Ksp22I	TGATCA	1 cut(s)	676
Kzo9I	GATC	2 cut(s)	676, 1134
LguI	GCTCTTC	1 cut(s)	233
LmnI	GCTCC	6 cut(s)	410, 581, 797, 819, 878, 1037
Lsp1109I	GCAGC	3 cut(s)	253, 641, 834
MaeI	CTAG	1 cut(s)	1068
MaeII	ACGT	1 cut(s)	771
MaeIII	GTNAC	3 cut(s)	767, 865, 980
MalI	GATC	2 cut(s)	678, 1136
MboI	GATC	2 cut(s)	676, 1134
MboII	GAAGA	5 cut(s)	32, 35, 40, 220, 916
MfeI	CAATTG	2 cut(s)	429, 585
MhlI	GDGCHC	8 cut(s)	661, 777, 802, 875, 883, 1028, 1042, 1077
MlyI	GAGTC	2 cut(s)	296, 741
MmeI	TCCRAC	3 cut(s)	37, 163, 810
MnlI	CCTC	6 cut(s)	168, 390, 754, 826, 1047, 1078
MseI	TTAA	1 cut(s)	372
MslI	CAYNNNNRTG	2 cut(s)	938, 953
MspA1I	CMGCKG	1 cut(s)	104
MspR9I	CCNGG	5 cut(s)	93, 538, 579, 916, 1035
MunI	CAATTG	2 cut(s)	429, 585
MvaI	CCWGG	5 cut(s)	93, 538, 579, 916, 1035
MwoI	GCNNNNNNNGC	6 cut(s)	509, 581, 626, 806, 822, 1046
NdeII	GATC	2 cut(s)	676, 1134
NlaIII	CATG	7 cut(s)	133, 166, 251, 350, 903, 958, 1065
NlaIV	GGNNCC	1 cut(s)	906
NmuCI	GTSAC	3 cut(s)	767, 865, 980
NspI	RCATGY	1 cut(s)	251
PagI	TCATGA	1 cut(s)	162
PciSI	GCTCTTC	1 cut(s)	233
PkrI	GCNGC	3 cut(s)	268, 631, 824
PleI	GAGTC	2 cut(s)	296, 741
PmaCI	CACGTG	1 cut(s)	772
PmlI	CACGTG	1 cut(s)	772
PpsI	GAGTC	2 cut(s)	296, 741
Ppu21I	YACGTR	1 cut(s)	772
PpuMI	RGGWCCY	1 cut(s)	905
Psp124BI	GAGCTC	2 cut(s)	1042, 1077
Psp5II	RGGWCCY	1 cut(s)	905
Psp6I	CCWGG	5 cut(s)	91, 536, 577, 914, 1033
PspCI	CACGTG	1 cut(s)	772
PspEI	GGTNACC	1 cut(s)	980
PspFI	CCCAGC	2 cut(s)	104, 571
PspGI	CCWGG	5 cut(s)	91, 536, 577, 914, 1033
PspN4I	GGNNCC	1 cut(s)	906
PspPI	GGNCC	4 cut(s)	343, 467, 905, 1031
PspPPI	RGGWCCY	1 cut(s)	905
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
RseI	CAYNNNNRTG	2 cut(s)	938, 953
SacI	GAGCTC	2 cut(s)	1042, 1077
SapI	GCTCTTC	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	3 cut(s)	267, 630, 823
Sau3AI	GATC	2 cut(s)	676, 1134
Sau96I	GGNCC	4 cut(s)	343, 467, 905, 1031
SchI	GAGTC	2 cut(s)	296, 741
ScrFI	CCNGG	5 cut(s)	93, 538, 579, 916, 1035
SduI	GDGCHC	8 cut(s)	661, 777, 802, 875, 883, 1028, 1042, 1077
SinI	GGWCC	4 cut(s)	343, 467, 905, 1031
SmiMI	CAYNNNNRTG	2 cut(s)	938, 953
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
SspMI	CTAG	1 cut(s)	1068
SstI	GAGCTC	2 cut(s)	1042, 1077
StyD4I	CCNGG	5 cut(s)	91, 536, 577, 914, 1033
TaaI	ACNGT	4 cut(s)	263, 860, 992, 1003
TaiI	ACGT	1 cut(s)	774
TaqI	TCGA	1 cut(s)	88
TatI	WGTACW	1 cut(s)	112
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	5 cut(s)	454, 606, 729, 1033, 1084
TseFI	GTSAC	3 cut(s)	767, 865, 980
TseI	GCWGC	3 cut(s)	266, 629, 822
Tsp45I	GTSAC	3 cut(s)	767, 865, 980
TspDTI	ATGAA	7 cut(s)	151, 179, 304, 520, 721, 1050, 1105
TspGWI	ACGGA	1 cut(s)	377
TspRI	CASTG	5 cut(s)	454, 606, 729, 1033, 1084
VneI	GTGCAC	2 cut(s)	773, 1024
VpaK11BI	GGWCC	4 cut(s)	343, 467, 905, 1031
XagI	CCTNNNNNAGG	2 cut(s)	758, 830
XapI	RAATTY	3 cut(s)	97, 517, 647
XbaI	TCTAGA	1 cut(s)	1067
XceI	RCATGY	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	357
XspI	CTAG	1 cut(s)	1068

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.