Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010570

Physical Location & Seq

Genomic Coordinates Reverse (-)

8625879 .. 8632537

Gene Structure 6659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G071400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGGGACGAGGACAAATTTCTACAAGAACCCTTCCATTGCTTACAAGAAGGACCTCAGTCTCTCCTCCGTTCTTCAGAACCTGAAAGCTTACAACATCGCCACTGGAAATACTCCTCCGATTGAAGAACATCCACCAGCTGCTGATGGCAAAACGGCATGTCGTAAACGCCAGCGTGATCCGGAACTGCCACCGCCGCCTCGTCGTCAGACTCAGAGCCGTGAAATCGAAGAGAACGATGGGCCTATGTCTCACCAGGATTACATAGATAAAAGAAGAAAAGAAGTTAGTGCATCGCAGGCTTATGAGGAATTGACTGCTGATGTTTTGGGAAAGCCGGGAACTTCGAGCTTAAAGTTGGTACAATATGACAGTGACGAAAGTACTTCGGAATGTGAGTTGAAGCAGGATTCTCCAAGTTCTGGTCACATACATGAATCTGATCGAGTAAAGAGCAGAAGTGAACAGCATTTCCCTCATCCAGGAGAACCTGTTTGTGTCATATGTGGTAAATATGGAGAATATATATGCGACGAGACCAATGACGACATCTGCAGCATGGAGTGCAAAGCTGATCTATTGGAAGCTCTTAAAGTTGTGAAGGAGCCCTCAAGCAATCAAAGACAAGATGTCTCCTCATCTGGACCCAAATTTTCCTTACCAATGCCTGATTTTGGTGAGGACACTTGGGATTATGAGCGGCATCGCTGGTCCAAGAAGATTTCCAGTCTTTCTACTTATGAATGTTGGAAATGTCGAAGGCCTGGACACCTTGCTGAAGATTGTTTGGTGATGACAAGTAACCAGGTGACGTTGGTCCAAGGCAAACCCAATTCAATACCTGCTGACCTTCTTGCATTGTACAGAAGATGCCACCAGATAGGCAAAAACATGTCAGCTGCAAAGTGCAATGAATGCTATAGCTCACTAAATTTAGCCACATGCCTTCATTGTAGCATTCCGCTCTGTGACAATGCAGGTCATTTGAATGAGCATATACAGGCAAATCCATCTCATCGACAATATTATTCTCATAAGCTCTCTCGTCTGGTGAAATGCTGTAAATCAACATGCAACGTGACTGACCTCAAGGATCTTTTGACATGCCAGTACTGTTTCGATAAAGCTTTTGATAAGTTCTATGACATGTATACTGCAACTTGGAAAGGCACAGGGCTTTCAATCATATCAGGTTCTATTTGCTGCGAAGATCACTTTGCTTGGCATAGGATGAACTGTATGAATGCTAATGCGGAAGAAAGTGCATATATCATCAGTAAGAGTTCCCAGAAAGACAAGCGTGTTCAGCTCAGTGACTTCATTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC zf-HIT

Protein Analysis

443

Amino Acids

49.96

Weight (kDa)

6.47

Isoelectric Point (pI)

56.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010570)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g18700 FvH4_5g18700 FvH4_5g18700 FvH4_5g18700 FvH4_5g18700
malus_domestica	MD06G1060400.v1.1
prunus_persica	Prupe.5G071400_v2.0.a1 Prupe.5G071400_v2.0.a1 Prupe.5G071400_v2.0.a1 Prupe.5G071400_v2.0.a1
pyrus_communis	pycom06g04990
rosa_chinensis	RchiOBHm_Chr7g0202991
rosa_laevigata	RLG00000003559
rosa_multiflora	Rmu_sc0008159.1_g000001
rosa_roxburghii	Rroxscaffold_3G00254120
rosa_rugosa	Rorug07G0074000
rosa_samantha	Rh7AG202300 Rh7BG202400 Rh7CG213400 Rh7DG209400
rosa_wichuraiana	Rw7G017690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	850, 968
AccB7I	CCANNNNNTGG	1 cut(s)	422
AccBSI	CCGCTC	2 cut(s)	700, 964
AccI	GTMKAC	1 cut(s)	1151
AccIII	TCCGGA	1 cut(s)	181
AciI	CCGC	5 cut(s)	194, 197, 700, 962, 1253
AclWI	GGATC	2 cut(s)	173, 1101
AcsI	RAATTY	3 cut(s)	16, 650, 931
AcuI	CTGAAG	2 cut(s)	59, 798
AfaI	GTAC	4 cut(s)	363, 385, 863, 1112
AfiI	CCNNNNNNNGG	3 cut(s)	422, 482, 674
AflIII	ACRYGT	2 cut(s)	891, 1146
AgsI	TTSAA	5 cut(s)	125, 403, 837, 988, 1182
AhdI	GACNNNNNGTC	1 cut(s)	629
AjnI	CCWGG	4 cut(s)	255, 481, 763, 804
AloI	GAACNNNNNNTCC	2 cut(s)	456, 488
Alw26I	GTCTC	4 cut(s)	65, 255, 530, 637
AlwI	GGATC	2 cut(s)	173, 1101
AlwNI	CAGNNNCTG	2 cut(s)	82, 143
Aor13HI	TCCGGA	1 cut(s)	181
AoxI	GGCC	2 cut(s)	242, 761
ApeKI	GCWGC	4 cut(s)	140, 555, 899, 1203
ApoI	RAATTY	3 cut(s)	16, 650, 931
AspS9I	GGNCC	5 cut(s)	52, 242, 644, 711, 817
AsuC2I	CCSGG	1 cut(s)	339
AsuHPI	GGTGA	5 cut(s)	245, 689, 802, 820, 1063
AvaII	GGWCC	4 cut(s)	52, 644, 711, 817
BanII	GRGCYC	1 cut(s)	609
BbvI	GCAGC	4 cut(s)	127, 567, 886, 1190
BccI	CCATC	3 cut(s)	140, 233, 1018
BceAI	ACGGC	2 cut(s)	171, 204
BciT130I	CCWGG	4 cut(s)	257, 483, 765, 806
BcnI	CCSGG	1 cut(s)	339
BcoDI	GTCTC	4 cut(s)	65, 255, 530, 637
BfmI	CTRYAG	2 cut(s)	553, 919
BfuAI	ACCTGC	2 cut(s)	850, 968
BisI	GCNGC	6 cut(s)	141, 197, 556, 701, 900, 1204
BlsI	GCNGC	6 cut(s)	142, 198, 557, 702, 901, 1205
BmcAI	AGTACT	2 cut(s)	385, 1112
Bme1390I	CCNGG	5 cut(s)	257, 339, 483, 765, 806
Bme18I	GGWCC	4 cut(s)	52, 644, 711, 817
BmeRI	GACNNNNNGTC	1 cut(s)	629
BmgT120I	GGNCC	5 cut(s)	52, 242, 644, 711, 817
BmiI	GGNNCC	2 cut(s)	606, 646
BmrFI	CCNGG	5 cut(s)	257, 339, 483, 765, 806
BmsI	GCATC	3 cut(s)	302, 712, 860
BoxI	GACNNNNGTC	2 cut(s)	57, 815
BpuEI	CTTGAG	2 cut(s)	595, 1073
BpuMI	CCSGG	1 cut(s)	339
BsaI	GGTCTC	1 cut(s)	530
BsaJI	CCNNGG	1 cut(s)	820
BsaWI	WCCGGW	1 cut(s)	181
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bsc4I	CCNNNNNNNGG	3 cut(s)	422, 482, 674
Bse1I	ACTGG	3 cut(s)	109, 726, 1108
Bse3DI	GCAATG	2 cut(s)	36, 916
BseAI	TCCGGA	1 cut(s)	181
BseBI	CCWGG	4 cut(s)	257, 483, 765, 806
BseDI	CCNNGG	1 cut(s)	820
BseGI	GGATG	3 cut(s)	130, 478, 1236
BseLI	CCNNNNNNNGG	3 cut(s)	422, 482, 674
BseMI	GCAATG	2 cut(s)	36, 916
BseMII	CTCAG	3 cut(s)	70, 227, 1324
BseNI	ACTGG	3 cut(s)	109, 726, 1108
BseRI	GAGGAG	3 cut(s)	55, 105, 625
BseXI	GCAGC	4 cut(s)	127, 567, 886, 1190
BshFI	GGCC	2 cut(s)	244, 763
BsiSI	CCGG	2 cut(s)	182, 338
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	3 cut(s)	422, 482, 674
BsmAI	GTCTC	4 cut(s)	65, 255, 530, 637
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	3 cut(s)	920, 957, 1249
BsnI	GGCC	2 cut(s)	244, 763
Bso31I	GGTCTC	1 cut(s)	530
Bsp1286I	GDGCHC	1 cut(s)	609
Bsp13I	TCCGGA	1 cut(s)	181
Bsp1407I	TGTACA	1 cut(s)	861
Bsp143I	GATC	5 cut(s)	178, 442, 574, 1093, 1210
BspACI	CCGC	5 cut(s)	194, 197, 700, 962, 1253
BspANI	GGCC	2 cut(s)	244, 763
BspCNI	CTCAG	3 cut(s)	69, 226, 1323
BspEI	TCCGGA	1 cut(s)	181
BspLI	GGNNCC	2 cut(s)	606, 646
BspMAI	CTGCAG	1 cut(s)	557
BspMI	ACCTGC	2 cut(s)	850, 968
BspPI	GGATC	2 cut(s)	173, 1101
BspTNI	GGTCTC	1 cut(s)	530
BsrBI	CCGCTC	2 cut(s)	700, 964
BsrDI	GCAATG	2 cut(s)	36, 916
BsrGI	TGTACA	1 cut(s)	861
BsrI	ACTGG	3 cut(s)	109, 726, 1108
BssECI	CCNNGG	1 cut(s)	820
BssMI	GATC	5 cut(s)	178, 442, 574, 1093, 1210
BssNAI	GTATAC	1 cut(s)	1152
BssT1I	CCWWGG	1 cut(s)	820
Bst1107I	GTATAC	1 cut(s)	1152
Bst2UI	CCWGG	4 cut(s)	257, 483, 765, 806
Bst4CI	ACNGT	3 cut(s)	374, 1115, 1238
Bst6I	CTCTTC	1 cut(s)	225
BstAPI	GCANNNNNTGC	2 cut(s)	564, 915
BstAUI	TGTACA	1 cut(s)	861
BstC8I	GCNNGC	2 cut(s)	173, 300
BstDEI	CTNAG	3 cut(s)	56, 213, 1310
BstENI	CCTNNNNNAGG	1 cut(s)	480
BstF5I	GGATG	3 cut(s)	130, 478, 1236
BstKTI	GATC	5 cut(s)	181, 445, 577, 1096, 1213
BstMAI	GTCTC	4 cut(s)	65, 255, 530, 637
BstMBI	GATC	5 cut(s)	178, 442, 574, 1093, 1210
BstMWI	GCNNNNNNNGC	5 cut(s)	196, 299, 564, 915, 1306
BstNI	CCWGG	4 cut(s)	257, 483, 765, 806
BstNSI	RCATGY	6 cut(s)	162, 895, 945, 1074, 1107, 1150
BstPAI	GACNNNNGTC	2 cut(s)	57, 815
BstSCI	CCNGG	5 cut(s)	255, 337, 481, 763, 804
BstSFI	CTRYAG	2 cut(s)	553, 919
BstV1I	GCAGC	4 cut(s)	127, 567, 886, 1190
BstX2I	RGATCY	1 cut(s)	1093
BstYI	RGATCY	1 cut(s)	1093
BstZ17I	GTATAC	1 cut(s)	1152
BsuRI	GGCC	2 cut(s)	244, 763
BtgZI	GCGATG	3 cut(s)	82, 279, 689
BtsCI	GGATG	3 cut(s)	130, 478, 1236
BtsIMutI	CAGTG	3 cut(s)	102, 379, 1318
BveI	ACCTGC	2 cut(s)	850, 968
Cac8I	GCNNGC	2 cut(s)	173, 300
CaiI	CAGNNNCTG	2 cut(s)	82, 143
Cfr13I	GGNCC	5 cut(s)	52, 242, 644, 711, 817
CsiI	ACCWGGT	1 cut(s)	804
Csp6I	GTAC	4 cut(s)	362, 384, 862, 1111
CviAII	CATG	8 cut(s)	159, 434, 559, 892, 942, 1071, 1104, 1147
CviQI	GTAC	4 cut(s)	362, 384, 862, 1111
DdeI	CTNAG	3 cut(s)	56, 213, 1310
DpnI	GATC	5 cut(s)	180, 444, 576, 1095, 1212
DpnII	GATC	5 cut(s)	178, 442, 574, 1093, 1210
DriI	GACNNNNNGTC	1 cut(s)	629
Eam1104I	CTCTTC	1 cut(s)	225
Eam1105I	GACNNNNNGTC	1 cut(s)	629
EarI	CTCTTC	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	820
Eco147I	AGGCCT	1 cut(s)	763
Eco24I	GRGCYC	1 cut(s)	609
Eco31I	GGTCTC	1 cut(s)	530
Eco47I	GGWCC	4 cut(s)	52, 644, 711, 817
Eco57I	CTGAAG	2 cut(s)	59, 798
EcoNI	CCTNNNNNAGG	1 cut(s)	480
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	4 cut(s)	255, 481, 763, 804
EcoT14I	CCWWGG	1 cut(s)	820
EcoT38I	GRGCYC	1 cut(s)	609
ErhI	CCWWGG	1 cut(s)	820
FaeI	CATG	8 cut(s)	162, 437, 562, 895, 945, 1074, 1107, 1150
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	8 cut(s)	158, 433, 558, 891, 941, 1070, 1103, 1146
FauNDI	CATATG	1 cut(s)	503
FblI	GTMKAC	1 cut(s)	1151
Fnu4HI	GCNGC	6 cut(s)	141, 197, 556, 701, 900, 1204
FokI	GGATG	3 cut(s)	117, 465, 1243
FriOI	GRGCYC	1 cut(s)	609
Fsp4HI	GCNGC	6 cut(s)	141, 197, 556, 701, 900, 1204
GluI	GCNGC	6 cut(s)	141, 197, 556, 701, 900, 1204
HaeIII	GGCC	2 cut(s)	244, 763
HapII	CCGG	2 cut(s)	182, 338
Hin1II	CATG	8 cut(s)	162, 437, 562, 895, 945, 1074, 1107, 1150
HindIII	AAGCTT	2 cut(s)	87, 1125
HinfI	GANTC	3 cut(s)	211, 410, 437
HpaII	CCGG	2 cut(s)	182, 338
HphI	GGTGA	5 cut(s)	245, 689, 802, 820, 1063
Hpy166II	GTNNAC	3 cut(s)	167, 464, 1152
Hpy188I	TCNGA	6 cut(s)	78, 120, 210, 216, 391, 442
Hpy188III	TCNNGA	2 cut(s)	182, 642
Hpy8I	GTNNAC	3 cut(s)	167, 464, 1152
Hpy99I	CGWCG	2 cut(s)	207, 536
HpyAV	CCTTC	6 cut(s)	42, 43, 595, 753, 860, 956
HpyCH4III	ACNGT	3 cut(s)	374, 1115, 1238
HpyCH4IV	ACGT	2 cut(s)	812, 1077
HpyF10VI	GCNNNNNNNGC	5 cut(s)	196, 299, 564, 915, 1306
HpyF3I	CTNAG	3 cut(s)	56, 213, 1310
HpySE526I	ACGT	2 cut(s)	812, 1077
Hsp92II	CATG	8 cut(s)	162, 437, 562, 895, 945, 1074, 1107, 1150
Kpn2I	TCCGGA	1 cut(s)	181
Kzo9I	GATC	5 cut(s)	178, 442, 574, 1093, 1210
LmnI	GCTCC	1 cut(s)	604
Lsp1109I	GCAGC	4 cut(s)	127, 567, 886, 1190
LweI	GCATC	3 cut(s)	302, 712, 860
MabI	ACCWGGT	1 cut(s)	804
MaeII	ACGT	2 cut(s)	812, 1077
MaeIII	GTNAC	7 cut(s)	374, 425, 800, 808, 968, 1078, 1313
MalI	GATC	5 cut(s)	180, 444, 576, 1095, 1212
MbiI	CCGCTC	2 cut(s)	700, 964
MboI	GATC	5 cut(s)	178, 442, 574, 1093, 1210
MboII	GAAGA	9 cut(s)	65, 137, 242, 288, 730, 791, 879, 1220, 1268
MflI	RGATCY	1 cut(s)	1093
MhlI	GDGCHC	1 cut(s)	609
MluCI	AATT	5 cut(s)	16, 311, 650, 832, 931
MlyI	GAGTC	1 cut(s)	205
MmeI	TCCRAC	1 cut(s)	728
MroI	TCCGGA	1 cut(s)	181
MseI	TTAA	2 cut(s)	353, 591
MslI	CAYNNNNRTG	2 cut(s)	432, 987
MspA1I	CMGCKG	2 cut(s)	140, 899
MspI	CCGG	2 cut(s)	182, 338
MspR9I	CCNGG	5 cut(s)	257, 339, 483, 765, 806
Mva1269I	GAATGC	3 cut(s)	920, 957, 1249
MvaI	CCWGG	4 cut(s)	257, 483, 765, 806
MwoI	GCNNNNNNNGC	5 cut(s)	196, 299, 564, 915, 1306
NciI	CCSGG	1 cut(s)	339
NdeI	CATATG	1 cut(s)	503
NdeII	GATC	5 cut(s)	178, 442, 574, 1093, 1210
NlaIII	CATG	8 cut(s)	162, 437, 562, 895, 945, 1074, 1107, 1150
NlaIV	GGNNCC	2 cut(s)	606, 646
NmuCI	GTSAC	6 cut(s)	374, 425, 808, 968, 1078, 1313
NspI	RCATGY	6 cut(s)	162, 895, 945, 1074, 1107, 1150
PceI	AGGCCT	1 cut(s)	763
PciI	ACATGT	2 cut(s)	891, 1146
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PctI	GAATGC	3 cut(s)	920, 957, 1249
PfeI	GAWTC	2 cut(s)	410, 437
PflMI	CCANNNNNTGG	1 cut(s)	422
PfoI	TCCNGGA	1 cut(s)	481
PkrI	GCNGC	6 cut(s)	142, 198, 557, 702, 901, 1205
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PpuMI	RGGWCCY	1 cut(s)	52
PscI	ACATGT	2 cut(s)	891, 1146
PshAI	GACNNNNGTC	2 cut(s)	57, 815
Psp5II	RGGWCCY	1 cut(s)	52
Psp6I	CCWGG	4 cut(s)	255, 481, 763, 804
PspGI	CCWGG	4 cut(s)	255, 481, 763, 804
PspN4I	GGNNCC	2 cut(s)	606, 646
PspPI	GGNCC	5 cut(s)	52, 242, 644, 711, 817
PspPPI	RGGWCCY	1 cut(s)	52
PstI	CTGCAG	1 cut(s)	557
PstNI	CAGNNNCTG	2 cut(s)	82, 143
PsuI	RGATCY	1 cut(s)	1093
PvuII	CAGCTG	2 cut(s)	140, 899
RsaI	GTAC	4 cut(s)	363, 385, 863, 1112
RsaNI	GTAC	4 cut(s)	362, 384, 862, 1111
RseI	CAYNNNNRTG	2 cut(s)	432, 987
SaqAI	TTAA	2 cut(s)	353, 591
SatI	GCNGC	6 cut(s)	141, 197, 556, 701, 900, 1204
Sau3AI	GATC	5 cut(s)	178, 442, 574, 1093, 1210
Sau96I	GGNCC	5 cut(s)	52, 242, 644, 711, 817
ScaI	AGTACT	2 cut(s)	385, 1112
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	5 cut(s)	257, 339, 483, 765, 806
SduI	GDGCHC	1 cut(s)	609
SexAI	ACCWGGT	1 cut(s)	804
SfaNI	GCATC	3 cut(s)	302, 712, 860
SfcI	CTRYAG	2 cut(s)	553, 919
SinI	GGWCC	4 cut(s)	52, 644, 711, 817
SmiMI	CAYNNNNRTG	2 cut(s)	432, 987
SmlI	CTYRAG	2 cut(s)	610, 1088
SmoI	CTYRAG	2 cut(s)	610, 1088
Sse9I	AATT	5 cut(s)	16, 311, 650, 832, 931
SseBI	AGGCCT	1 cut(s)	763
SsiI	CCGC	5 cut(s)	194, 197, 700, 962, 1253
SspI	AATATT	1 cut(s)	1025
StuI	AGGCCT	1 cut(s)	763
StyD4I	CCNGG	5 cut(s)	255, 337, 481, 763, 804
StyI	CCWWGG	1 cut(s)	820
TaaI	ACNGT	3 cut(s)	374, 1115, 1238
TaiI	ACGT	2 cut(s)	815, 1080
TaqI	TCGA	6 cut(s)	228, 347, 445, 757, 1018, 1119
TasI	AATT	5 cut(s)	16, 311, 650, 832, 931
TatI	WGTACW	3 cut(s)	383, 861, 1110
TauI	GCSGC	2 cut(s)	199, 703
TfiI	GAWTC	2 cut(s)	410, 437
Tru1I	TTAA	2 cut(s)	353, 591
Tru9I	TTAA	2 cut(s)	353, 591
TscAI	CASTG	3 cut(s)	109, 379, 1318
TseFI	GTSAC	6 cut(s)	374, 425, 808, 968, 1078, 1313
TseI	GCWGC	4 cut(s)	140, 555, 899, 1203
Tsp45I	GTSAC	6 cut(s)	374, 425, 808, 968, 1078, 1313
TspDTI	ATGAA	7 cut(s)	450, 756, 927, 938, 1247, 1256, 1309
TspGWI	ACGGA	1 cut(s)	58
TspRI	CASTG	3 cut(s)	109, 379, 1318
Van91I	CCANNNNNTGG	1 cut(s)	422
VpaK11BI	GGWCC	4 cut(s)	52, 644, 711, 817
XagI	CCTNNNNNAGG	1 cut(s)	480
XapI	RAATTY	3 cut(s)	16, 650, 931
XceI	RCATGY	6 cut(s)	162, 895, 945, 1074, 1107, 1150
XmiI	GTMKAC	1 cut(s)	1151
ZrmI	AGTACT	2 cut(s)	385, 1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.