Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008159.1

Orthogroup ID

OG0010570

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 818

Gene Structure 817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008159.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 434 bp

atgacgacgagaacgaacttctacaagaacccttccattacttacaagaaggacctcagtctctcctccgttcttcaaaacctccaagcttacaacatcgccaccggcaatgctccgccgcctgaagaacaacatctgccggccgccgatgccaaagcggcaggtcgtaaacgccagcgcgatccaaaaccggcgccgccgccttgtggcgggaagcgtgaaattgaagagcgcgatggacctatgtcgcaccaggattacatagacaagagaagaaaagaagcttttgcaacgccagcatttgaagaattaactgcggatgttttgggaaagcagggaacttccaactcatgtttaaatttggtacagtatgacagtgatgagagtagttcttcagaatgtgaagagaagccgcatgatcctccaaattctgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC zf-HIT

Protein Analysis

145

Amino Acids

15.97

Weight (kDa)

5.64

Isoelectric Point (pI)

78.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010570)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g18700 FvH4_5g18700 FvH4_5g18700 FvH4_5g18700 FvH4_5g18700
malus_domestica	MD06G1060400.v1.1
prunus_persica	Prupe.5G071400_v2.0.a1 Prupe.5G071400_v2.0.a1 Prupe.5G071400_v2.0.a1 Prupe.5G071400_v2.0.a1
pyrus_communis	pycom06g04990
rosa_chinensis	RchiOBHm_Chr7g0202991
rosa_laevigata	RLG00000003559
rosa_multiflora	Rmu_sc0008159.1_g000001
rosa_roxburghii	Rroxscaffold_3G00254120
rosa_rugosa	Rorug07G0074000
rosa_samantha	Rh7AG202300 Rh7BG202400 Rh7CG213400 Rh7DG209400
rosa_wichuraiana	Rw7G017690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	152
AccB1I	GGYRCC	1 cut(s)	193
AccB7I	CCANNNNNTGG	1 cut(s)	431
AccII	CGCG	2 cut(s)	180, 234
AciI	CCGC	9 cut(s)	116, 119, 144, 158, 197, 200, 210, 317, 413
AclWI	GGATC	2 cut(s)	176, 413
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	2 cut(s)	358, 427
AcuI	CTGAAG	2 cut(s)	144, 378
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	1 cut(s)	366
AfiI	CCNNNNNNNGG	3 cut(s)	206, 209, 431
AgsI	TTSAA	3 cut(s)	77, 227, 305
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	2 cut(s)	89, 284
AluI	AGCT	2 cut(s)	89, 284
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	2 cut(s)	176, 413
AoxI	GGCC	1 cut(s)	141
ApoI	RAATTY	2 cut(s)	358, 427
AspLEI	GCGC	3 cut(s)	180, 196, 234
AspS9I	GGNCC	2 cut(s)	52, 239
AvaII	GGWCC	2 cut(s)	52, 239
BanI	GGYRCC	1 cut(s)	193
BccI	CCATC	1 cut(s)	230
BciT130I	CCWGG	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	65
BfoI	RGCGCY	1 cut(s)	197
BfuAI	ACCTGC	1 cut(s)	152
BglI	GCCNNNNNGGC	1 cut(s)	158
BisI	GCNGC	6 cut(s)	119, 144, 159, 197, 200, 413
BlsI	GCNGC	6 cut(s)	120, 145, 160, 198, 201, 414
Bme1390I	CCNGG	1 cut(s)	254
Bme18I	GGWCC	2 cut(s)	52, 239
BmgT120I	GGNCC	2 cut(s)	52, 239
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	254
BmsI	GCATC	1 cut(s)	139
BoxI	GACNNNNGTC	2 cut(s)	57, 244
BsaHI	GRCGYC	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 209, 431
Bse118I	RCCGGY	3 cut(s)	104, 139, 190
Bse3DI	GCAATG	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	254
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	3 cut(s)	206, 209, 431
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	55
BseX3I	CGGCCG	1 cut(s)	141
Bsh1236I	CGCG	2 cut(s)	180, 234
Bsh1285I	CGRYCG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	143
BshNI	GGYRCC	1 cut(s)	193
BsiEI	CGRYCG	1 cut(s)	144
BsiSI	CCGG	3 cut(s)	105, 140, 191
BslI	CCNNNNNNNGG	3 cut(s)	206, 209, 431
BsmAI	GTCTC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	181, 418
BspACI	CCGC	9 cut(s)	116, 119, 144, 158, 197, 200, 210, 317, 413
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	69
BspFNI	CGCG	2 cut(s)	180, 234
BspLI	GGNNCC	1 cut(s)	195
BspMI	ACCTGC	1 cut(s)	152
BspPI	GGATC	2 cut(s)	176, 413
BspQI	GCTCTTC	1 cut(s)	222
BspT107I	GGYRCC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	115
BsrFI	RCCGGY	3 cut(s)	104, 139, 190
BssAI	RCCGGY	3 cut(s)	104, 139, 190
BssMI	GATC	2 cut(s)	181, 418
BssNI	GRCGYC	1 cut(s)	194
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	2 cut(s)	369, 377
Bst6I	CTCTTC	2 cut(s)	222, 399
BstACI	GRCGYC	1 cut(s)	194
BstC8I	GCNNGC	3 cut(s)	141, 176, 297
BstDEI	CTNAG	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	325
BstFNI	CGCG	2 cut(s)	180, 234
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	3 cut(s)	180, 196, 234
BstKTI	GATC	2 cut(s)	184, 421
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	2 cut(s)	181, 418
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 158, 296
BstNI	CCWGG	1 cut(s)	254
BstPAI	GACNNNNGTC	2 cut(s)	57, 244
BstSCI	CCNGG	1 cut(s)	252
BstUI	CGCG	2 cut(s)	180, 234
BstZI	CGGCCG	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	143
BtgZI	GCGATG	2 cut(s)	82, 249
BtsCI	GGATG	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	382
BveI	ACCTGC	1 cut(s)	152
Cac8I	GCNNGC	3 cut(s)	141, 176, 297
CfoI	GCGC	3 cut(s)	180, 196, 234
Cfr10I	RCCGGY	3 cut(s)	104, 139, 190
Cfr13I	GGNCC	2 cut(s)	52, 239
Csp6I	GTAC	1 cut(s)	365
CviAII	CATG	2 cut(s)	351, 416
CviJI	RGCY	4 cut(s)	89, 143, 284, 412
CviKI_1	RGCY	4 cut(s)	89, 143, 284, 412
CviQI	GTAC	1 cut(s)	365
DdeI	CTNAG	1 cut(s)	56
DinI	GGCGCC	1 cut(s)	195
DpnI	GATC	2 cut(s)	183, 420
DpnII	GATC	2 cut(s)	181, 418
DraI	TTTAAA	1 cut(s)	357
EaeI	YGGCCR	1 cut(s)	141
EagI	CGGCCG	1 cut(s)	141
Eam1104I	CTCTTC	2 cut(s)	222, 399
EarI	CTCTTC	2 cut(s)	222, 399
EciI	GGCGGA	1 cut(s)	105
EclXI	CGGCCG	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	52, 239
Eco52I	CGGCCG	1 cut(s)	141
Eco57I	CTGAAG	2 cut(s)	144, 378
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	252
EgeI	GGCGCC	1 cut(s)	195
EheI	GGCGCC	1 cut(s)	195
FaeI	CATG	2 cut(s)	354, 419
FaiI	YATR	5 cut(s)	245, 263, 352, 372, 417
FatI	CATG	2 cut(s)	350, 415
FauI	CCCGC	1 cut(s)	203
Fnu4HI	GCNGC	6 cut(s)	119, 144, 159, 197, 200, 413
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	6 cut(s)	119, 144, 159, 197, 200, 413
GlaI	GCGC	3 cut(s)	179, 195, 233
GluI	GCNGC	6 cut(s)	119, 144, 159, 197, 200, 413
HaeII	RGCGCY	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	3 cut(s)	105, 140, 191
HhaI	GCGC	3 cut(s)	180, 196, 234
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	2 cut(s)	354, 419
Hin6I	GCGC	3 cut(s)	178, 194, 232
HinP1I	GCGC	3 cut(s)	178, 194, 232
HindIII	AAGCTT	2 cut(s)	87, 282
HpaII	CCGG	3 cut(s)	105, 140, 191
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	1 cut(s)	397
Hpy8I	GTNNAC	1 cut(s)	170
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	42, 43
HpyCH4III	ACNGT	2 cut(s)	369, 377
HpyCH4V	TGCA	1 cut(s)	290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 158, 296
HpyF3I	CTNAG	1 cut(s)	56
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	2 cut(s)	354, 419
HspAI	GCGC	3 cut(s)	178, 194, 232
KasI	GGCGCC	1 cut(s)	193
KroI	GCCGGC	1 cut(s)	139
KroNI	GCCGGC	1 cut(s)	141
Kzo9I	GATC	2 cut(s)	181, 418
LguI	GCTCTTC	1 cut(s)	222
LmnI	GCTCC	1 cut(s)	118
LweI	GCATC	1 cut(s)	139
MalI	GATC	2 cut(s)	183, 420
MboI	GATC	2 cut(s)	181, 418
MboII	GAAGA	7 cut(s)	65, 137, 239, 285, 317, 384, 416
MluCI	AATT	4 cut(s)	222, 308, 358, 427
Mly113I	GGCGCC	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	4 cut(s)	65, 76, 92, 432
MroNI	GCCGGC	1 cut(s)	139
MseI	TTAA	2 cut(s)	311, 356
MspI	CCGG	3 cut(s)	105, 140, 191
MspR9I	CCNGG	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	254
MvnI	CGCG	2 cut(s)	180, 234
MwoI	GCNNNNNNNGC	3 cut(s)	149, 158, 296
NaeI	GCCGGC	1 cut(s)	141
NarI	GGCGCC	1 cut(s)	194
NdeII	GATC	2 cut(s)	181, 418
NgoMIV	GCCGGC	1 cut(s)	139
NlaIII	CATG	2 cut(s)	354, 419
NlaIV	GGNNCC	1 cut(s)	195
PciSI	GCTCTTC	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PdiI	GCCGGC	1 cut(s)	141
PflMI	CCANNNNNTGG	1 cut(s)	431
PkrI	GCNGC	6 cut(s)	120, 145, 160, 198, 201, 414
PluTI	GGCGCC	1 cut(s)	197
PpuMI	RGGWCCY	1 cut(s)	52
PshAI	GACNNNNGTC	2 cut(s)	57, 244
Psp5II	RGGWCCY	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	2 cut(s)	52, 239
PspPPI	RGGWCCY	1 cut(s)	52
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
SapI	GCTCTTC	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	311, 356
SatI	GCNGC	6 cut(s)	119, 144, 159, 197, 200, 413
Sau3AI	GATC	2 cut(s)	181, 418
Sau96I	GGNCC	2 cut(s)	52, 239
ScrFI	CCNGG	1 cut(s)	254
SetI	ASST	6 cut(s)	57, 84, 91, 166, 244, 286
SfaNI	GCATC	1 cut(s)	139
SfoI	GGCGCC	1 cut(s)	195
SinI	GGWCC	2 cut(s)	52, 239
Sse9I	AATT	4 cut(s)	222, 308, 358, 427
SsiI	CCGC	9 cut(s)	116, 119, 144, 158, 197, 200, 210, 317, 413
SspDI	GGCGCC	1 cut(s)	193
StyD4I	CCNGG	1 cut(s)	252
TaaI	ACNGT	2 cut(s)	369, 377
TasI	AATT	4 cut(s)	222, 308, 358, 427
TauI	GCSGC	6 cut(s)	121, 146, 161, 199, 202, 415
Tru1I	TTAA	2 cut(s)	311, 356
Tru9I	TTAA	2 cut(s)	311, 356
TscAI	CASTG	1 cut(s)	382
TspGWI	ACGGA	1 cut(s)	58
TspRI	CASTG	1 cut(s)	382
Van91I	CCANNNNNTGG	1 cut(s)	431
VpaK11BI	GGWCC	2 cut(s)	52, 239
XapI	RAATTY	2 cut(s)	358, 427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.