Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008866

Physical Location & Seq

Genomic Coordinates Forward (+)

15498606 .. 15499818

Gene Structure 1213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G188100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTTGGTCGATCTTGGCTACGAAGCTCGTCCTCTCGACTTCCCATGGCTCATGCTGCCCGACAACCACCACCACAACGCTGGCAACGACGATGAAGCTTACCACAACCAAGACCTGAAGTGTTTTTTCAGTCTTTACACTCACCAAATCCACTGTCTTGAACTGCCCGAGGCTTATGAAAGGACTGTATGCGGATCATCATCAGGCTGGCTAATCTTGCGACATGAAACCACATCAGCCGTTACACTGCTCAACCCTCTCAACCGCGCCCAAATTGCTCTCCCCCAACTCTCTTCTTCTCCATTCTATGATCAAGACCCTTTACCTGTTCTTCACAAAGCTATACTGTCTTCAGACCCTTGTCGCTACCCGTTCGACTACAAAGTTTTGGCCATTTTTGGGCAGAAGCGAAGGCTCATATGCTACAAAGCAAGGGACAGGACTTGGACCATGATACAAGATGCAGGGGTTCATTATGAAGACATTATTTCCATGGGCAACGAGTTGCTGGCCACTGATGAGGTTGGAAGGCTTGTGTCTTGCAATCTTGATGGAGATTGGTTTTGGTTTCCACCAAATGTTGAAGAAATTTCTGACCCTTTTTTCTTTAAAGGAGGCAAAGTTTATCTTGTGGGCATAGAAGGAGAGCTGGTTATGCTGATAAGGTTTGTGCAGGAAAACTCTAGTTTTGGCCGAGAGACATATGACTTTGAAGTTTACAGGTACGATTCTATGGAAAGCATTTGGGAACCCATCAGCAACTTAGGTTCATGGACAATTCTCTTGGGACATAACCAGTCTACCGCCATTGAAGCTCGGCAATTTAAGGGGCTGATAAAACCCAACTGCATCTACTTCACTGATGATAGTTTGGAGGAGGATAGTTTGCTGGTTGGCCATGACTCTGGTGTTTTTAGCATGGAAGATGGTAAAGTTGAGCCACTGAGATGTATTTCACATGATTTCATGTATGTTTGGCCACGCCCAGTTTGGTATATGCCTAGTTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295

Protein Analysis

338

Amino Acids

38.88

Weight (kDa)

4.81

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008866)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15320
malus_domestica	MD06G1189300.v1.1 MD14G1196300.v1.1
prunus_persica	Prupe.5G188100_v2.0.a1
pyrus_communis	pycom06g16820 pycom14g16300
rosa_laevigata	RLG00000005233 RLG00000005234
rosa_multiflora	Rmu_sc0007457.1_g000013 Rmu_sc0007457.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272570 Rroxscaffold_3G00272580
rosa_rugosa	Rorug06G0435600 Rorug06G0435700
rosa_samantha	Rh7AG037300 Rh7AG037400 Rh7BG037000 Rh7BG037100 Rh7CG038700 Rh7CG038800 Rh7DG037200 Rh7DG037300
rosa_wichuraiana	Rw7G003080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	800
AccII	CGCG	1 cut(s)	267
AciI	CCGC	3 cut(s)	192, 265, 804
AclWI	GGATC	1 cut(s)	202
AcoI	YGGCCR	5 cut(s)	390, 510, 691, 895, 977
AcsI	RAATTY	1 cut(s)	588
AcuI	CTGAAG	2 cut(s)	137, 336
AfaI	GTAC	1 cut(s)	725
AfiI	CCNNNNNNNGG	1 cut(s)	399
AgsI	TTSAA	4 cut(s)	161, 584, 713, 812
AluBI	AGCT	5 cut(s)	26, 98, 341, 649, 815
AluI	AGCT	5 cut(s)	26, 98, 341, 649, 815
Alw26I	GTCTC	1 cut(s)	692
AlwI	GGATC	1 cut(s)	202
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	5 cut(s)	390, 510, 691, 895, 977
ApeKI	GCWGC	1 cut(s)	55
ApoI	RAATTY	1 cut(s)	588
ArsI	GACNNNNNNTTYG	2 cut(s)	139, 171
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	447
AsuHPI	GGTGA	1 cut(s)	134
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	447
BalI	TGGCCA	4 cut(s)	392, 512, 897, 979
BbsI	GAAGAC	2 cut(s)	342, 486
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	3 cut(s)	545, 761, 920
BceAI	ACGGC	1 cut(s)	224
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	692
BfaI	CTAG	2 cut(s)	684, 1002
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	447
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	447
BmiI	GGNNCC	1 cut(s)	750
BmrI	ACTGGG	1 cut(s)	980
BmsI	GCATC	2 cut(s)	451, 858
BmuI	ACTGGG	1 cut(s)	980
BoxI	GACNNNNGTC	1 cut(s)	360
BpiI	GAAGAC	2 cut(s)	342, 486
BsaBI	GATNNNNATC	1 cut(s)	199
BsaJI	CCNNGG	3 cut(s)	44, 168, 492
BsaXI	ACNNNNNCTCC	4 cut(s)	606, 636, 636, 666
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse1I	ACTGG	2 cut(s)	796, 986
Bse8I	GATNNNNATC	1 cut(s)	199
BseDI	CCNNGG	3 cut(s)	44, 168, 492
BseJI	GATNNNNATC	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMII	CTCAG	1 cut(s)	935
BseNI	ACTGG	2 cut(s)	796, 986
BseRI	GAGGAG	1 cut(s)	890
BseXI	GCAGC	1 cut(s)	42
BsgI	GTGCAG	1 cut(s)	692
Bsh1236I	CGCG	1 cut(s)	267
BshFI	GGCC	5 cut(s)	392, 512, 693, 897, 979
BsiHKCI	CYCGRG	1 cut(s)	167
BslFI	GGGAC	2 cut(s)	449, 801
BslI	CCNNNNNNNGG	1 cut(s)	399
BsmAI	GTCTC	1 cut(s)	692
BsmFI	GGGAC	2 cut(s)	449, 801
BsnI	GGCC	5 cut(s)	392, 512, 693, 897, 979
BsoBI	CYCGRG	1 cut(s)	167
Bsp143I	GATC	3 cut(s)	10, 194, 310
Bsp19I	CCATGG	2 cut(s)	44, 492
BspACI	CCGC	3 cut(s)	192, 265, 804
BspANI	GGCC	5 cut(s)	392, 512, 693, 897, 979
BspCNI	CTCAG	1 cut(s)	936
BspFNI	CGCG	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	750
BspPI	GGATC	1 cut(s)	202
BsrI	ACTGG	2 cut(s)	796, 986
BssECI	CCNNGG	3 cut(s)	44, 168, 492
BssMI	GATC	3 cut(s)	10, 194, 310
BssT1I	CCWWGG	2 cut(s)	44, 492
Bst4CI	ACNGT	3 cut(s)	155, 187, 348
Bst6I	CTCTTC	1 cut(s)	298
BstC8I	GCNNGC	3 cut(s)	82, 209, 510
BstDEI	CTNAG	2 cut(s)	763, 944
BstDSI	CCRYGG	2 cut(s)	44, 492
BstFNI	CGCG	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	3 cut(s)	13, 197, 313
BstMAI	GTCTC	1 cut(s)	692
BstMBI	GATC	3 cut(s)	10, 194, 310
BstMWI	GCNNNNNNNGC	5 cut(s)	55, 217, 275, 655, 812
BstPAI	GACNNNNGTC	1 cut(s)	360
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	42
BstV2I	GAAGAC	2 cut(s)	342, 486
BstXI	CCANNNNNNTGG	2 cut(s)	80, 905
BsuRI	GGCC	5 cut(s)	392, 512, 693, 897, 979
BtgI	CCRYGG	2 cut(s)	44, 492
BtsI	GCAGTG	1 cut(s)	245
BtsIMutI	CAGTG	5 cut(s)	151, 245, 513, 858, 941
Cac8I	GCNNGC	3 cut(s)	82, 209, 510
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	447
Csp6I	GTAC	1 cut(s)	724
CviQI	GTAC	1 cut(s)	724
DdeI	CTNAG	2 cut(s)	763, 944
DpnI	GATC	3 cut(s)	12, 196, 312
DpnII	GATC	3 cut(s)	10, 194, 310
DraI	TTTAAA	1 cut(s)	610
EaeI	YGGCCR	5 cut(s)	390, 510, 691, 895, 977
Eam1104I	CTCTTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	298
Eco130I	CCWWGG	2 cut(s)	44, 492
Eco47I	GGWCC	1 cut(s)	447
Eco57I	CTGAAG	2 cut(s)	137, 336
Eco88I	CYCGRG	1 cut(s)	167
EcoT14I	CCWWGG	2 cut(s)	44, 492
ErhI	CCWWGG	2 cut(s)	44, 492
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FaqI	GGGAC	2 cut(s)	449, 801
FauNDI	CATATG	2 cut(s)	419, 703
FbaI	TGATCA	1 cut(s)	310
FblI	GTMKAC	1 cut(s)	800
Fnu4HI	GCNGC	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	56
FspBI	CTAG	2 cut(s)	684, 1002
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	1 cut(s)	56
HaeIII	GGCC	5 cut(s)	392, 512, 693, 897, 979
HhaI	GCGC	1 cut(s)	269
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HindIII	AAGCTT	1 cut(s)	96
HinfI	GANTC	2 cut(s)	728, 902
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	2 cut(s)	718, 801
Hpy188I	TCNGA	2 cut(s)	355, 595
Hpy188III	TCNNGA	4 cut(s)	35, 158, 314, 548
Hpy8I	GTNNAC	2 cut(s)	718, 801
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	3 cut(s)	405, 522, 635
HpyCH4III	ACNGT	3 cut(s)	155, 187, 348
HpyCH4V	TGCA	4 cut(s)	464, 543, 673, 849
HpyF10VI	GCNNNNNNNGC	5 cut(s)	55, 217, 275, 655, 812
HpyF3I	CTNAG	2 cut(s)	763, 944
HspAI	GCGC	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	3 cut(s)	10, 194, 310
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	2 cut(s)	451, 858
MaeI	CTAG	2 cut(s)	684, 1002
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	3 cut(s)	12, 196, 312
MboI	GATC	3 cut(s)	10, 194, 310
MboII	GAAGA	7 cut(s)	285, 288, 323, 342, 491, 596, 935
MlsI	TGGCCA	4 cut(s)	392, 512, 897, 979
MluCI	AATT	4 cut(s)	273, 588, 777, 821
MluNI	TGGCCA	4 cut(s)	392, 512, 897, 979
MlyI	GAGTC	1 cut(s)	896
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	7 cut(s)	42, 163, 267, 514, 608, 868, 871
Mox20I	TGGCCA	4 cut(s)	392, 512, 897, 979
MscI	TGGCCA	4 cut(s)	392, 512, 897, 979
MseI	TTAA	2 cut(s)	609, 825
MslI	CAYNNNNRTG	1 cut(s)	946
Msp20I	TGGCCA	4 cut(s)	392, 512, 897, 979
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	5 cut(s)	55, 217, 275, 655, 812
NcoI	CCATGG	2 cut(s)	44, 492
NdeI	CATATG	2 cut(s)	419, 703
NdeII	GATC	3 cut(s)	10, 194, 310
NlaIV	GGNNCC	1 cut(s)	750
NmeAIII	GCCGAG	2 cut(s)	719, 796
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	728
PkrI	GCNGC	1 cut(s)	57
PleI	GAGTC	1 cut(s)	896
PpsI	GAGTC	1 cut(s)	896
PshAI	GACNNNNGTC	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	750
PspPI	GGNCC	1 cut(s)	447
RsaI	GTAC	1 cut(s)	725
RsaNI	GTAC	1 cut(s)	724
RseI	CAYNNNNRTG	1 cut(s)	946
SaqAI	TTAA	2 cut(s)	609, 825
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	3 cut(s)	10, 194, 310
Sau96I	GGNCC	1 cut(s)	447
SchI	GAGTC	1 cut(s)	896
SfaNI	GCATC	2 cut(s)	451, 858
SinI	GGWCC	1 cut(s)	447
SmiMI	CAYNNNNRTG	1 cut(s)	946
Sse9I	AATT	4 cut(s)	273, 588, 777, 821
SsiI	CCGC	3 cut(s)	192, 265, 804
SspMI	CTAG	2 cut(s)	684, 1002
StyI	CCWWGG	2 cut(s)	44, 492
TaaI	ACNGT	3 cut(s)	155, 187, 348
TaqI	TCGA	3 cut(s)	9, 36, 375
TasI	AATT	4 cut(s)	273, 588, 777, 821
TfiI	GAWTC	1 cut(s)	728
Tru1I	TTAA	2 cut(s)	609, 825
Tru9I	TTAA	2 cut(s)	609, 825
TscAI	CASTG	5 cut(s)	158, 252, 520, 865, 948
TseI	GCWGC	1 cut(s)	55
TspDTI	ATGAA	7 cut(s)	108, 192, 240, 461, 492, 759, 955
TspRI	CASTG	5 cut(s)	158, 252, 520, 865, 948
VpaK11BI	GGWCC	1 cut(s)	447
XapI	RAATTY	1 cut(s)	588
XcmI	CCANNNNNNNNNTGG	2 cut(s)	77, 987
XmiI	GTMKAC	1 cut(s)	800
XspI	CTAG	2 cut(s)	684, 1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.