Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007457.1

Orthogroup ID

OG0008866

Physical Location & Seq

Genomic Coordinates Reverse (-)

85399 .. 86355

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007457.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atggtgagctactccccatggctaatggttcccaaccagcaccactccgaagatcgtcatcgcactgaatcctccatttccagtggacttggttggtggacttgttttgcaaattccatttgtggagaagtcgaggaaaaacacatcaaacgatctttcctcaacgtttccaccaacgaagtccacactctcgaactacccgaggatgcatgtggaaaaagaaaaaccatatgtggattctcactaggttggctaatcctgttcgacaatagcaactcatcactcactctcctcaaccctttcattggcgaccaaatcaacaacctcccactactccctcgaaagggcaccgtccacaaggccgtactgtctgcagacccgtcttgcaaccctaacggctacaaagtcctggcaatcttcggagaaaaacgagagctaattggttacgaacaaggtatgaagcaatggactatgttacaagattatggaaatcactacgacgatgttcttgtccaaacggacgaggcgtttgtagcagtgagtgagttggggaagcttgtgtgctgcgatccaccagcttgtaacgaacatgtaccagcttctttctttaaaggtaaaaaggtttatttagtgagcataaatggagacgtatttatgctggtaagcttttcggggacgagctactgtttttggcatgaaacctacgacgacaagcttaaaaggtttgaggtttacaggtatgatgaaggacggtggtgccacaccaaaaatctgcacgagtttacgattttcttgggacagaaccactcagtagctgtgcgtaatgccccggattttagacctgattgcatatacttcactgatgatgatgaaggtaaagttgacaactcgggcgtgtttagtttgaaagatggcgaaactgaaagaatgcaatggtttatgcctaggttgtcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295

Protein Analysis

318

Amino Acids

36.33

Weight (kDa)

5.54

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008866)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15320
malus_domestica	MD06G1189300.v1.1 MD14G1196300.v1.1
prunus_persica	Prupe.5G188100_v2.0.a1
pyrus_communis	pycom06g16820 pycom14g16300
rosa_laevigata	RLG00000005233 RLG00000005234
rosa_multiflora	Rmu_sc0007457.1_g000013 Rmu_sc0007457.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272570 Rroxscaffold_3G00272580
rosa_rugosa	Rorug06G0435600 Rorug06G0435700
rosa_samantha	Rh7AG037300 Rh7AG037400 Rh7BG037000 Rh7BG037100 Rh7CG038700 Rh7CG038800 Rh7DG037200 Rh7DG037300
rosa_wichuraiana	Rw7G003080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	347, 756
AclI	AACGTT	1 cut(s)	165
AclWI	GGATC	1 cut(s)	563
AcsI	RAATTY	1 cut(s)	112
AfaI	GTAC	2 cut(s)	366, 594
AfiI	CCNNNNNNNGG	3 cut(s)	305, 343, 344
AflIII	ACRYGT	1 cut(s)	589
AgsI	TTSAA	1 cut(s)	907
AjnI	CCWGG	1 cut(s)	408
AluBI	AGCT	9 cut(s)	9, 436, 556, 578, 599, 666, 681, 715, 815
AluI	AGCT	9 cut(s)	9, 436, 556, 578, 599, 666, 681, 715, 815
Alw26I	GTCTC	1 cut(s)	639
AlwI	GGATC	1 cut(s)	563
AlwNI	CAGNNNCTG	1 cut(s)	815
Ama87I	CYCGRG	2 cut(s)	200, 889
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	1 cut(s)	564
ApoI	RAATTY	1 cut(s)	112
ArsI	GACNNNNNNTTYG	2 cut(s)	512, 544
AspA2I	CCTAGG	1 cut(s)	944
AsuC2I	CCSGG	1 cut(s)	830
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	2 cut(s)	200, 889
AvrII	CCTAGG	1 cut(s)	944
BaeGI	GKGCMC	1 cut(s)	350
BanI	GGYRCC	2 cut(s)	347, 756
BauI	CACGAG	1 cut(s)	776
BbvI	GCAGC	1 cut(s)	551
BccI	CCATC	1 cut(s)	905
BceAI	ACGGC	2 cut(s)	347, 412
BciT130I	CCWGG	1 cut(s)	410
BcnI	CCSGG	1 cut(s)	830
BcoDI	GTCTC	1 cut(s)	639
BfaI	CTAG	2 cut(s)	245, 945
BfmI	CTRYAG	1 cut(s)	372
BisI	GCNGC	1 cut(s)	565
BlnI	CCTAGG	1 cut(s)	944
BlsI	GCNGC	1 cut(s)	566
Bme1390I	CCNGG	2 cut(s)	410, 830
BmeT110I	CYCGRG	2 cut(s)	200, 889
BmiI	GGNNCC	3 cut(s)	30, 349, 758
BmrFI	CCNGG	2 cut(s)	410, 830
BmsI	GCATC	1 cut(s)	196
BpuMI	CCSGG	1 cut(s)	830
BsaBI	GATNNNNATC	1 cut(s)	57
BsaJI	CCNNGG	4 cut(s)	17, 201, 828, 944
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	3 cut(s)	305, 343, 344
Bse1I	ACTGG	1 cut(s)	81
Bse3DI	GCAATG	2 cut(s)	470, 938
Bse8I	GATNNNNATC	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	4 cut(s)	17, 201, 828, 944
BseGI	GGATG	1 cut(s)	211
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	3 cut(s)	305, 343, 344
BseMI	GCAATG	2 cut(s)	470, 938
BseMII	CTCAG	1 cut(s)	822
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	281
BseSI	GKGCMC	1 cut(s)	350
BseXI	GCAGC	1 cut(s)	551
BsgI	GTGCAG	1 cut(s)	758
BshFI	GGCC	1 cut(s)	362
BshNI	GGYRCC	2 cut(s)	347, 756
BsiHKCI	CYCGRG	2 cut(s)	200, 889
BsiSI	CCGG	1 cut(s)	830
BslFI	GGGAC	2 cut(s)	688, 810
BslI	CCNNNNNNNGG	3 cut(s)	305, 343, 344
BsmAI	GTCTC	1 cut(s)	639
BsmBI	CGTCTC	1 cut(s)	639
BsmFI	GGGAC	2 cut(s)	688, 810
BsmI	GAATGC	1 cut(s)	933
BsnI	GGCC	1 cut(s)	362
BsoBI	CYCGRG	2 cut(s)	200, 889
Bsp1286I	GDGCHC	1 cut(s)	350
Bsp143I	GATC	3 cut(s)	52, 152, 568
Bsp19I	CCATGG	1 cut(s)	17
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	1 cut(s)	821
BspLI	GGNNCC	3 cut(s)	30, 349, 758
BspMAI	CTGCAG	1 cut(s)	376
BspPI	GGATC	1 cut(s)	563
BspT107I	GGYRCC	2 cut(s)	347, 756
BsrDI	GCAATG	2 cut(s)	470, 938
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	4 cut(s)	17, 201, 828, 944
BssMI	GATC	3 cut(s)	52, 152, 568
BssSI	CACGAG	1 cut(s)	776
BssT1I	CCWWGG	2 cut(s)	17, 944
Bst2BI	CACGAG	1 cut(s)	776
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	4 cut(s)	352, 369, 686, 753
BstDEI	CTNAG	1 cut(s)	808
BstDSI	CCRYGG	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	3 cut(s)	55, 155, 571
BstMAI	GTCTC	1 cut(s)	639
BstMBI	GATC	3 cut(s)	52, 152, 568
BstMWI	GCNNNNNNNGC	1 cut(s)	533
BstNI	CCWGG	1 cut(s)	410
BstNSI	RCATGY	2 cut(s)	213, 593
BstSCI	CCNGG	2 cut(s)	408, 828
BstSFI	CTRYAG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	350
BstV1I	GCAGC	1 cut(s)	551
BsuRI	GGCC	1 cut(s)	362
BtgI	CCRYGG	1 cut(s)	17
BtgZI	GCGATG	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	211
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	4 cut(s)	63, 88, 543, 858
CaiI	CAGNNNCTG	1 cut(s)	815
Csp6I	GTAC	2 cut(s)	365, 593
CviAII	CATG	4 cut(s)	18, 210, 590, 695
CviQI	GTAC	2 cut(s)	365, 593
DdeI	CTNAG	1 cut(s)	808
DpnI	GATC	3 cut(s)	54, 154, 570
DpnII	GATC	3 cut(s)	52, 152, 568
DraI	TTTAAA	1 cut(s)	610
Eco130I	CCWWGG	2 cut(s)	17, 944
Eco88I	CYCGRG	2 cut(s)	200, 889
EcoRII	CCWGG	1 cut(s)	408
EcoT14I	CCWWGG	2 cut(s)	17, 944
EcoT22I	ATGCAT	1 cut(s)	211
ErhI	CCWWGG	2 cut(s)	17, 944
Esp3I	CGTCTC	1 cut(s)	639
FaeI	CATG	4 cut(s)	21, 213, 593, 698
FaqI	GGGAC	2 cut(s)	688, 810
FatI	CATG	4 cut(s)	17, 209, 589, 694
FauNDI	CATATG	1 cut(s)	230
Fnu4HI	GCNGC	1 cut(s)	565
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	565
FspBI	CTAG	2 cut(s)	245, 945
GluI	GCNGC	1 cut(s)	565
HaeIII	GGCC	1 cut(s)	362
HapII	CCGG	1 cut(s)	830
Hin1II	CATG	4 cut(s)	21, 213, 593, 698
HincII	GTYRAC	1 cut(s)	883
HindII	GTYRAC	1 cut(s)	883
HindIII	AAGCTT	3 cut(s)	554, 664, 713
HinfI	GANTC	2 cut(s)	68, 237
HpaII	CCGG	1 cut(s)	830
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	7 cut(s)	86, 99, 184, 355, 733, 783, 883
Hpy188I	TCNGA	2 cut(s)	49, 422
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	7 cut(s)	86, 99, 184, 355, 733, 783, 883
Hpy99I	CGWCG	2 cut(s)	503, 710
HpyAV	CCTTC	2 cut(s)	740, 866
HpyCH4III	ACNGT	4 cut(s)	352, 369, 686, 753
HpyCH4IV	ACGT	2 cut(s)	165, 648
HpyCH4V	TGCA	7 cut(s)	110, 209, 374, 387, 775, 849, 931
HpyF10VI	GCNNNNNNNGC	1 cut(s)	533
HpyF3I	CTNAG	1 cut(s)	808
HpySE526I	ACGT	2 cut(s)	165, 648
Hsp92II	CATG	4 cut(s)	21, 213, 593, 698
Kzo9I	GATC	3 cut(s)	52, 152, 568
Lsp1109I	GCAGC	1 cut(s)	551
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	2 cut(s)	245, 945
MaeII	ACGT	2 cut(s)	165, 648
MaeIII	GTNAC	3 cut(s)	443, 474, 581
MalI	GATC	3 cut(s)	54, 154, 570
MboI	GATC	3 cut(s)	52, 152, 568
MboII	GAAGA	2 cut(s)	62, 409
MhlI	GDGCHC	1 cut(s)	350
MluCI	AATT	2 cut(s)	112, 438
MnlI	CCTC	9 cut(s)	82, 127, 170, 196, 302, 335, 348, 517, 721
Mph1103I	ATGCAT	1 cut(s)	211
MseI	TTAA	2 cut(s)	609, 717
MspI	CCGG	1 cut(s)	830
MspR9I	CCNGG	2 cut(s)	410, 830
Mva1269I	GAATGC	1 cut(s)	933
MvaI	CCWGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	1 cut(s)	533
NciI	CCSGG	1 cut(s)	830
NcoI	CCATGG	1 cut(s)	17
NdeI	CATATG	1 cut(s)	230
NdeII	GATC	3 cut(s)	52, 152, 568
NlaIII	CATG	4 cut(s)	21, 213, 593, 698
NlaIV	GGNNCC	3 cut(s)	30, 349, 758
NsiI	ATGCAT	1 cut(s)	211
NspI	RCATGY	2 cut(s)	213, 593
PciI	ACATGT	1 cut(s)	589
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 524
PctI	GAATGC	1 cut(s)	933
PfeI	GAWTC	2 cut(s)	68, 237
PkrI	GCNGC	1 cut(s)	566
PscI	ACATGT	1 cut(s)	589
Psp1406I	AACGTT	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	3 cut(s)	30, 349, 758
PstI	CTGCAG	1 cut(s)	376
PstNI	CAGNNNCTG	1 cut(s)	815
RsaI	GTAC	2 cut(s)	366, 594
RsaNI	GTAC	2 cut(s)	365, 593
SaqAI	TTAA	2 cut(s)	609, 717
SatI	GCNGC	1 cut(s)	565
Sau3AI	GATC	3 cut(s)	52, 152, 568
ScrFI	CCNGG	2 cut(s)	410, 830
SduI	GDGCHC	1 cut(s)	350
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	372
Sse9I	AATT	2 cut(s)	112, 438
SspMI	CTAG	2 cut(s)	245, 945
StyD4I	CCNGG	2 cut(s)	408, 828
StyI	CCWWGG	2 cut(s)	17, 944
TaaI	ACNGT	4 cut(s)	352, 369, 686, 753
TaiI	ACGT	2 cut(s)	168, 651
TaqI	TCGA	4 cut(s)	132, 192, 264, 340
TasI	AATT	2 cut(s)	112, 438
TfiI	GAWTC	2 cut(s)	68, 237
Tru1I	TTAA	2 cut(s)	609, 717
Tru9I	TTAA	2 cut(s)	609, 717
TscAI	CASTG	4 cut(s)	70, 88, 543, 865
TseI	GCWGC	1 cut(s)	564
TspDTI	ATGAA	5 cut(s)	292, 473, 711, 759, 885
TspGWI	ACGGA	1 cut(s)	533
TspRI	CASTG	4 cut(s)	70, 88, 543, 865
XapI	RAATTY	1 cut(s)	112
XceI	RCATGY	2 cut(s)	213, 593
XmaJI	CCTAGG	1 cut(s)	944
XspI	CTAG	2 cut(s)	245, 945
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.