Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008866

Physical Location & Seq

Genomic Coordinates Reverse (-)

57020614 .. 57021015

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0435600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAATGAAGGCATCTTTTGTTATGATCTGAAATCAGGCAGCTTCAACCTAGTTGAGAAGACTATAGCTCCTCCCCTTAAAGCAGTTATCCCTTACAACGAAAGGCACTTGTGTACTTACAAGTATTCCGAGGAGGGGCCGGAGGAGGAGGATCAGTGGGATAGAAAGTATGTTCCGGGCATATACGTTTATGATACTAAGCAGCACCAGTGGCTCCCTAGATCAGTACAAGGCCTCCCCACTGATGGGGTGATCCTTCCCCGTCCCGTTATTTCATGTGAACATCCAGGCGATTATGCATACTTGCTCCAAATAGGAACCCACCAGGGTTCTCCCAAGTTGGCTGTGGGAGTTGTAAACTATTTTTGGACCCCTCATTATCGGTCATTATTTTGGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295

Protein Analysis

133

Amino Acids

15.45

Weight (kDa)

6.18

Isoelectric Point (pI)

53.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008866)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15320
malus_domestica	MD06G1189300.v1.1 MD14G1196300.v1.1
prunus_persica	Prupe.5G188100_v2.0.a1
pyrus_communis	pycom06g16820 pycom14g16300
rosa_laevigata	RLG00000005233 RLG00000005234
rosa_multiflora	Rmu_sc0007457.1_g000013 Rmu_sc0007457.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272570 Rroxscaffold_3G00272580
rosa_rugosa	Rorug06G0435600 Rorug06G0435700
rosa_samantha	Rh7AG037300 Rh7AG037400 Rh7BG037000 Rh7BG037100 Rh7CG038700 Rh7CG038800 Rh7DG037200 Rh7DG037300
rosa_wichuraiana	Rw7G003080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	397
AclWI	GGATC	2 cut(s)	159, 247
AfaI	GTAC	2 cut(s)	115, 228
AfiI	CCNNNNNNNGG	3 cut(s)	135, 245, 246
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	2 cut(s)	286, 324
AluBI	AGCT	2 cut(s)	42, 68
AluI	AGCT	2 cut(s)	42, 68
AlwI	GGATC	2 cut(s)	159, 247
AoxI	GGCC	2 cut(s)	137, 232
ApeKI	GCWGC	2 cut(s)	39, 202
AspS9I	GGNCC	2 cut(s)	137, 369
AsuC2I	CCSGG	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	65
BbvI	GCAGC	2 cut(s)	51, 214
BccI	CCATC	1 cut(s)	239
BciT130I	CCWGG	2 cut(s)	288, 326
BcnI	CCSGG	1 cut(s)	177
BfaI	CTAG	2 cut(s)	50, 219
BfmI	CTRYAG	1 cut(s)	63
BisI	GCNGC	2 cut(s)	40, 203
BlsI	GCNGC	2 cut(s)	41, 204
Bme1390I	CCNGG	3 cut(s)	177, 288, 326
Bme18I	GGWCC	1 cut(s)	369
BmgT120I	GGNCC	2 cut(s)	137, 369
BmiI	GGNNCC	4 cut(s)	138, 215, 319, 371
BmrFI	CCNGG	3 cut(s)	177, 288, 326
BmsI	GCATC	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	129, 325
BsaXI	ACNNNNNCTCC	6 cut(s)	52, 82, 140, 170, 219, 249
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 245, 246
Bse1I	ACTGG	1 cut(s)	208
BseBI	CCWGG	2 cut(s)	288, 326
BseDI	CCNNGG	2 cut(s)	129, 325
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	3 cut(s)	135, 245, 246
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	4 cut(s)	60, 146, 158, 161
BseXI	GCAGC	2 cut(s)	51, 214
BshFI	GGCC	2 cut(s)	139, 234
BsiSI	CCGG	2 cut(s)	140, 176
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	3 cut(s)	135, 245, 246
BsmFI	GGGAC	1 cut(s)	249
BsnI	GGCC	2 cut(s)	139, 234
Bsp143I	GATC	4 cut(s)	25, 151, 221, 252
BspACI	CCGC	1 cut(s)	397
BspANI	GGCC	2 cut(s)	139, 234
BspLI	GGNNCC	4 cut(s)	138, 215, 319, 371
BspPI	GGATC	2 cut(s)	159, 247
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	2 cut(s)	129, 325
BssMI	GATC	4 cut(s)	25, 151, 221, 252
Bst2UI	CCWGG	2 cut(s)	288, 326
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	4 cut(s)	28, 154, 224, 255
BstMBI	GATC	4 cut(s)	25, 151, 221, 252
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstNI	CCWGG	2 cut(s)	288, 326
BstSCI	CCNGG	3 cut(s)	175, 286, 324
BstSFI	CTRYAG	1 cut(s)	63
BstV1I	GCAGC	2 cut(s)	51, 214
BstV2I	GAAGAC	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	139, 234
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	3 cut(s)	161, 215, 240
Cfr13I	GGNCC	2 cut(s)	137, 369
Csp6I	GTAC	2 cut(s)	114, 227
CviAII	CATG	1 cut(s)	276
CviJI	RGCY	6 cut(s)	42, 68, 139, 214, 234, 344
CviKI_1	RGCY	6 cut(s)	42, 68, 139, 214, 234, 344
CviQI	GTAC	2 cut(s)	114, 227
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	4 cut(s)	27, 153, 223, 254
DpnII	GATC	4 cut(s)	25, 151, 221, 252
Eco147I	AGGCCT	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	369
EcoRII	CCWGG	2 cut(s)	286, 324
EcoT22I	ATGCAT	1 cut(s)	301
FaeI	CATG	1 cut(s)	279
FaiI	YATR	9 cut(s)	24, 65, 171, 182, 184, 192, 277, 297, 301
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	1 cut(s)	275
Fnu4HI	GCNGC	2 cut(s)	40, 203
FokI	GGATG	1 cut(s)	270
Fsp4HI	GCNGC	2 cut(s)	40, 203
FspBI	CTAG	2 cut(s)	50, 219
GluI	GCNGC	2 cut(s)	40, 203
HaeIII	GGCC	2 cut(s)	139, 234
HapII	CCGG	2 cut(s)	140, 176
Hin1II	CATG	1 cut(s)	279
HpaII	CCGG	2 cut(s)	140, 176
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	3 cut(s)	114, 281, 358
Hpy188I	TCNGA	2 cut(s)	30, 130
Hpy8I	GTNNAC	3 cut(s)	114, 281, 358
HpyAV	CCTTC	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	1 cut(s)	299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	279
Kzo9I	GATC	4 cut(s)	25, 151, 221, 252
LmnI	GCTCC	3 cut(s)	73, 219, 312
LpnPI	CCDG	8 cut(s)	21, 153, 189, 221, 273, 300, 311, 338
Lsp1109I	GCAGC	2 cut(s)	51, 214
LweI	GCATC	1 cut(s)	21
MaeI	CTAG	2 cut(s)	50, 219
MaeII	ACGT	1 cut(s)	186
MalI	GATC	4 cut(s)	27, 153, 223, 254
MboI	GATC	4 cut(s)	25, 151, 221, 252
MboII	GAAGA	1 cut(s)	70
MnlI	CCTC	8 cut(s)	81, 124, 127, 136, 139, 142, 245, 384
Mph1103I	ATGCAT	1 cut(s)	301
MseI	TTAA	1 cut(s)	78
MspI	CCGG	2 cut(s)	140, 176
MspR9I	CCNGG	3 cut(s)	177, 288, 326
MvaI	CCWGG	2 cut(s)	288, 326
MwoI	GCNNNNNNNGC	1 cut(s)	211
NciI	CCSGG	1 cut(s)	177
NdeII	GATC	4 cut(s)	25, 151, 221, 252
NlaIII	CATG	1 cut(s)	279
NlaIV	GGNNCC	4 cut(s)	138, 215, 319, 371
NsiI	ATGCAT	1 cut(s)	301
PceI	AGGCCT	1 cut(s)	234
PkrI	GCNGC	2 cut(s)	41, 204
Psp6I	CCWGG	2 cut(s)	286, 324
PspGI	CCWGG	2 cut(s)	286, 324
PspN4I	GGNNCC	4 cut(s)	138, 215, 319, 371
PspPI	GGNCC	2 cut(s)	137, 369
RsaI	GTAC	2 cut(s)	115, 228
RsaNI	GTAC	2 cut(s)	114, 227
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	2 cut(s)	40, 203
Sau3AI	GATC	4 cut(s)	25, 151, 221, 252
Sau96I	GGNCC	2 cut(s)	137, 369
ScrFI	CCNGG	3 cut(s)	177, 288, 326
SetI	ASST	4 cut(s)	44, 51, 70, 189
SfaNI	GCATC	1 cut(s)	21
SfcI	CTRYAG	1 cut(s)	63
SinI	GGWCC	1 cut(s)	369
SseBI	AGGCCT	1 cut(s)	234
SsiI	CCGC	1 cut(s)	397
SspMI	CTAG	2 cut(s)	50, 219
StuI	AGGCCT	1 cut(s)	234
StyD4I	CCNGG	3 cut(s)	175, 286, 324
TaiI	ACGT	1 cut(s)	189
TaqII	GACCGA	1 cut(s)	372
TatI	WGTACW	2 cut(s)	113, 226
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	3 cut(s)	161, 215, 247
TseI	GCWGC	2 cut(s)	39, 202
TspDTI	ATGAA	3 cut(s)	17, 21, 264
TspRI	CASTG	3 cut(s)	161, 215, 247
VpaK11BI	GGWCC	1 cut(s)	369
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XspI	CTAG	2 cut(s)	50, 219
Zsp2I	ATGCAT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.