Rorug06G0435700

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008866
Physical Location & Seq
Reverse (-)
57021035 .. 57021415
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0435700.1

Sequence Viewer

Length: 270 bp
ATGGGTGTGAGGCTTGGACTTATGGTCATGGACATGGCCGTAGAAGACGAAAACCAATGGCGATGGGTATCTCTTTGGAGCGGATATGAAAAGGGAACGCAGAACCCCCGACTTCTTGAAGCAGTGGCCGGCGAAGATGGCTGTATGTATGCTTTGAAAACTGATCGTACAATACACCGTATCCGTCATGATGATCATGATAATTATCCCCGCAGCCAGGTCGAGTTTATGGATCGACCATTCATGGAAGCGCCTCTTTGGTCTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295

Protein Analysis

89

Amino Acids

10.5

Weight (kDa)

5.02

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 81
AciI CCGC 2 cut(s) 81, 211
AclWI GGATC 1 cut(s) 240
AcoI YGGCCR 2 cut(s) 36, 126
AfaI GTAC 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 217
AgsI TTSAA 2 cut(s) 119, 157
AhdI GACNNNNNGTC 1 cut(s) 23
AjnI CCWGG 1 cut(s) 216
AlwI GGATC 1 cut(s) 240
AoxI GGCC 2 cut(s) 36, 126
ApeKI GCWGC 1 cut(s) 213
AspLEI GCGC 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 225
BccI CCATC 2 cut(s) 57, 131
BceAI ACGGC 1 cut(s) 23
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BciT130I CCWGG 1 cut(s) 218
BciVI GTATCC 1 cut(s) 191
BclI TGATCA 1 cut(s) 193
BfoI RGCGCY 1 cut(s) 254
BfuI GTATCC 1 cut(s) 191
BisI GCNGC 1 cut(s) 214
BlsI GCNGC 1 cut(s) 215
Bme1390I CCNGG 1 cut(s) 218
BmeRI GACNNNNNGTC 1 cut(s) 23
BmrFI CCNGG 1 cut(s) 218
BpiI GAAGAC 1 cut(s) 51
BsaBI GATNNNNATC 2 cut(s) 67, 204
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse118I RCCGGY 1 cut(s) 128
Bse8I GATNNNNATC 2 cut(s) 67, 204
BseBI CCWGG 1 cut(s) 218
BseJI GATNNNNATC 2 cut(s) 67, 204
BseLI CCNNNNNNNGG 1 cut(s) 217
BseXI GCAGC 1 cut(s) 225
BshFI GGCC 2 cut(s) 38, 128
BsiSI CCGG 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 217
BsnI GGCC 2 cut(s) 38, 128
Bsp143I GATC 3 cut(s) 163, 193, 232
BspACI CCGC 2 cut(s) 81, 211
BspANI GGCC 2 cut(s) 38, 128
BspHI TCATGA 2 cut(s) 187, 196
BspPI GGATC 1 cut(s) 240
BsrBI CCGCTC 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 128
BssMI GATC 3 cut(s) 163, 193, 232
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 130
BstH2I RGCGCY 1 cut(s) 254
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 3 cut(s) 166, 196, 235
BstMBI GATC 3 cut(s) 163, 193, 232
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 225
BstV2I GAAGAC 1 cut(s) 51
BsuI GTATCC 1 cut(s) 191
BsuRI GGCC 2 cut(s) 38, 128
BtgZI GCGATG 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 130
CciI TCATGA 2 cut(s) 187, 196
CfoI GCGC 1 cut(s) 253
Cfr10I RCCGGY 1 cut(s) 128
Csp6I GTAC 1 cut(s) 168
CviAII CATG 5 cut(s) 28, 34, 188, 197, 244
CviJI RGCY 5 cut(s) 13, 38, 128, 141, 216
CviKI_1 RGCY 5 cut(s) 13, 38, 128, 141, 216
CviQI GTAC 1 cut(s) 168
DpnI GATC 3 cut(s) 165, 195, 234
DpnII GATC 3 cut(s) 163, 193, 232
DriI GACNNNNNGTC 1 cut(s) 23
EaeI YGGCCR 2 cut(s) 36, 126
Eam1105I GACNNNNNGTC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 216
FaeI CATG 5 cut(s) 31, 37, 191, 200, 247
FalI AAGNNNNNCTT 1 cut(s) 240
FatI CATG 5 cut(s) 27, 33, 187, 196, 243
FauI CCCGC 1 cut(s) 218
FbaI TGATCA 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 214
Fsp4HI GCNGC 1 cut(s) 214
GlaI GCGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 214
HaeII RGCGCY 1 cut(s) 254
HaeIII GGCC 2 cut(s) 38, 128
HapII CCGG 1 cut(s) 129
HhaI GCGC 1 cut(s) 253
Hin1II CATG 5 cut(s) 31, 37, 191, 200, 247
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HpaII CCGG 1 cut(s) 129
Hpy188III TCNNGA 3 cut(s) 116, 188, 197
HpyCH4III ACNGT 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
Hsp92II CATG 5 cut(s) 31, 37, 191, 200, 247
HspAI GCGC 1 cut(s) 251
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 3 cut(s) 163, 193, 232
LmnI GCTCC 1 cut(s) 78
LpnPI CCDG 3 cut(s) 142, 203, 230
Lsp1109I GCAGC 1 cut(s) 225
MalI GATC 3 cut(s) 165, 195, 234
MbiI CCGCTC 1 cut(s) 81
MboI GATC 3 cut(s) 163, 193, 232
MboII GAAGA 2 cut(s) 56, 146
MluCI AATT 1 cut(s) 202
MnlI CCTC 2 cut(s) 3, 264
MroNI GCCGGC 1 cut(s) 128
MslI CAYNNNNRTG 1 cut(s) 32
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 218
MvaI CCWGG 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 138
NaeI GCCGGC 1 cut(s) 130
NdeII GATC 3 cut(s) 163, 193, 232
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 5 cut(s) 31, 37, 191, 200, 247
PagI TCATGA 2 cut(s) 187, 196
PdiI GCCGGC 1 cut(s) 130
PkrI GCNGC 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
RseI CAYNNNNRTG 1 cut(s) 32
SatI GCNGC 1 cut(s) 214
Sau3AI GATC 3 cut(s) 163, 193, 232
ScrFI CCNGG 1 cut(s) 218
SetI ASST 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 32
Sse9I AATT 1 cut(s) 202
SsiI CCGC 2 cut(s) 81, 211
StyD4I CCNGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 179
TaqI TCGA 2 cut(s) 222, 235
TasI AATT 1 cut(s) 202
TscAI CASTG 1 cut(s) 129
TseI GCWGC 1 cut(s) 213
TspDTI ATGAA 2 cut(s) 102, 232
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.