Prupe.5G222000_v2.0.a1

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0017544
Physical Location & Seq
Forward (+)
17263929 .. 17264977
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G222000.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 714 bp
ATGAGCCCACATGCAACCAACAAAAGGGACGTCAACGTGATCATCAACAACAATAACAATAATAATAATGGTTTGTATCCGCCTCCCTCATTGAAGATCAACAAGGACTCCCATTTCATCAAGAAATCGCCCTCCTCCTCCTCTTCCTCCCCGTCCTCGTCCGCCTCCTCGTCCACGTCATCGCTAGTGAACGCCGTGGCGGGATCTGCTTGTGCGAGGCCGCCGCCGCAGCAGCAGCAGCGCCACCCGGTCATTATCTACACGCATTCGCCCAAGATCATACACACGCATCCGCGGGATTTCATGGCGTTGGTGCAGAAACTCACGGGCCTCTCGCGCTTCGACGAAGATGCACAAGTGGCGCCCCCGCAGCAGCAGCAGCAGCCGCAGCGGACGACGAAAGCCGAGAGGGGGGAGGGTTTGTTGGAGGAGGAGATGATGAGTGGTAAGGGCGCCAATGTTGTGATGAGAAACGAGGATAACGACTCGTCGTCGGTGATCACGGCGGAGGAGAATTGCAGCAGCACAAATATTATTAATAGTAATATTAATCTAGGGGTCAGCGTAGGCGTAGGAGGAGGAGGGGATGGGCATGTTCAGATGAATTCATGCTTTGTGCCGCCCAATCCTTATATCGGAGGGATTCCGGTTTTTACCCCCAACGCCGCCGATTTCTTTAGCTCCAATCCCATCAACCACCTTTTTACAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

238

Amino Acids

25.37

Weight (kDa)

6.7

Isoelectric Point (pI)

65.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017544)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18360
fragaria_vesca FvH4_5g11980
prunus_persica Prupe.5G222000_v2.0.a1
rosa_laevigata RLG00000004902
rosa_multiflora Rmu_sc0010190.1_g000012
rosa_roxburghii Rroxscaffold_3G00268840
rosa_rugosa Rorug06G0470100
rosa_samantha Rh7AG072600 Rh7BG075200 Rh7CG075400 Rh7DG075100
rosa_wichuraiana Rw7G006250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 33
AccB1I GGYRCC 2 cut(s) 361, 452
AccII CGCG 2 cut(s) 295, 337
AclWI GGATC 1 cut(s) 211
AcsI RAATTY 1 cut(s) 604
AcyI GRCGYC 3 cut(s) 30, 362, 453
AfiI CCNNNNNNNGG 3 cut(s) 24, 411, 635
AgsI TTSAA 1 cut(s) 94
AhdI GACNNNNNGTC 1 cut(s) 490
AjiI CACGTC 1 cut(s) 177
AluBI AGCT 1 cut(s) 681
AluI AGCT 1 cut(s) 681
AlwI GGATC 1 cut(s) 211
AoxI GGCC 2 cut(s) 218, 328
ApoI RAATTY 1 cut(s) 604
ArsI GACNNNNNNTTYG 2 cut(s) 15, 47
AseI ATTAAT 2 cut(s) 537, 549
AspLEI GCGC 4 cut(s) 243, 339, 364, 455
AspS9I GGNCC 1 cut(s) 328
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 508
BanI GGYRCC 2 cut(s) 361, 452
BanII GRGCYC 1 cut(s) 8
BccI CCATC 2 cut(s) 581, 698
BceAI ACGGC 2 cut(s) 179, 519
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciVI GTATCC 1 cut(s) 87
BclI TGATCA 2 cut(s) 39, 498
BcnI CCSGG 1 cut(s) 248
BfaI CTAG 2 cut(s) 185, 554
BfoI RGCGCY 3 cut(s) 244, 365, 456
BfuI GTATCC 1 cut(s) 87
Bme1390I CCNGG 1 cut(s) 248
BmeRI GACNNNNNGTC 1 cut(s) 490
BmgBI CACGTC 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 328
BmiI GGNNCC 2 cut(s) 363, 454
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 2 cut(s) 298, 340
BpuMI CCSGG 1 cut(s) 248
BsaHI GRCGYC 3 cut(s) 30, 362, 453
BsaJI CCNNGG 2 cut(s) 195, 293
BsaWI WCCGGW 1 cut(s) 646
BsaXI ACNNNNNCTCC 4 cut(s) 92, 122, 407, 437
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 411, 635
BseDI CCNNGG 2 cut(s) 195, 293
BseGI GGATG 2 cut(s) 289, 592
BseLI CCNNNNNNNGG 3 cut(s) 24, 411, 635
BseRI GAGGAG 9 cut(s) 124, 127, 130, 157, 443, 446, 524, 591, 594
BsgI GTGCAG 1 cut(s) 335
Bsh1236I CGCG 2 cut(s) 295, 337
BshFI GGCC 2 cut(s) 220, 330
BshNI GGYRCC 2 cut(s) 361, 452
BsiSI CCGG 2 cut(s) 248, 647
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 3 cut(s) 24, 411, 635
BsmFI GGGAC 1 cut(s) 41
BsmI GAATGC 1 cut(s) 265
BsnI GGCC 2 cut(s) 220, 330
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 5 cut(s) 39, 96, 203, 276, 498
BspANI GGCC 2 cut(s) 220, 330
BspFNI CGCG 2 cut(s) 295, 337
BspLI GGNNCC 2 cut(s) 363, 454
BspPI GGATC 1 cut(s) 211
BspT107I GGYRCC 2 cut(s) 361, 452
BssECI CCNNGG 2 cut(s) 195, 293
BssMI GATC 5 cut(s) 39, 96, 203, 276, 498
BssNI GRCGYC 3 cut(s) 30, 362, 453
Bst6I CTCTTC 1 cut(s) 148
BstACI GRCGYC 3 cut(s) 30, 362, 453
BstDSI CCRYGG 2 cut(s) 195, 293
BstF5I GGATG 2 cut(s) 289, 592
BstFNI CGCG 2 cut(s) 295, 337
BstH2I RGCGCY 3 cut(s) 244, 365, 456
BstHHI GCGC 4 cut(s) 243, 339, 364, 455
BstKTI GATC 5 cut(s) 42, 99, 206, 279, 501
BstMBI GATC 5 cut(s) 39, 96, 203, 276, 498
BstNSI RCATGY 2 cut(s) 14, 596
BstSCI CCNGG 1 cut(s) 246
BstUI CGCG 2 cut(s) 295, 337
BstX2I RGATCY 1 cut(s) 203
BstYI RGATCY 1 cut(s) 203
BsuI GTATCC 1 cut(s) 87
BsuRI GGCC 2 cut(s) 220, 330
BtgI CCRYGG 2 cut(s) 195, 293
BtgZI GCGATG 1 cut(s) 165
BtrI CACGTC 1 cut(s) 177
BtsCI GGATG 2 cut(s) 289, 592
CfoI GCGC 4 cut(s) 243, 339, 364, 455
Cfr13I GGNCC 1 cut(s) 328
Cfr42I CCGCGG 1 cut(s) 296
CviAII CATG 4 cut(s) 11, 304, 593, 609
CviJI RGCY 6 cut(s) 6, 220, 330, 385, 404, 681
CviKI_1 RGCY 6 cut(s) 6, 220, 330, 385, 404, 681
DinI GGCGCC 2 cut(s) 363, 454
DpnI GATC 5 cut(s) 41, 98, 205, 278, 500
DpnII GATC 5 cut(s) 39, 96, 203, 276, 498
DriI GACNNNNNGTC 1 cut(s) 490
Eam1104I CTCTTC 1 cut(s) 148
Eam1105I GACNNNNNGTC 1 cut(s) 490
EarI CTCTTC 1 cut(s) 148
EciI GGCGGA 3 cut(s) 69, 151, 521
Eco24I GRGCYC 1 cut(s) 8
EcoRI GAATTC 1 cut(s) 604
EcoT38I GRGCYC 1 cut(s) 8
EgeI GGCGCC 2 cut(s) 363, 454
EheI GGCGCC 2 cut(s) 363, 454
FaeI CATG 4 cut(s) 14, 307, 596, 612
FaiI YATR 7 cut(s) 12, 281, 305, 594, 610, 633, 712
FaqI GGGAC 1 cut(s) 41
FatI CATG 4 cut(s) 10, 303, 592, 608
FauI CCCGC 3 cut(s) 193, 288, 375
FbaI TGATCA 2 cut(s) 39, 498
FokI GGATG 2 cut(s) 276, 599
FriOI GRGCYC 1 cut(s) 8
FspBI CTAG 2 cut(s) 185, 554
GlaI GCGC 4 cut(s) 242, 338, 363, 454
HaeII RGCGCY 3 cut(s) 244, 365, 456
HaeIII GGCC 2 cut(s) 220, 330
HapII CCGG 2 cut(s) 248, 647
HhaI GCGC 4 cut(s) 243, 339, 364, 455
Hin1I GRCGYC 3 cut(s) 30, 362, 453
Hin1II CATG 4 cut(s) 14, 307, 596, 612
Hin6I GCGC 4 cut(s) 241, 337, 362, 453
HinP1I GCGC 4 cut(s) 241, 337, 362, 453
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 3 cut(s) 107, 485, 643
HpaII CCGG 2 cut(s) 248, 647
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 3 cut(s) 34, 174, 190
Hpy188I TCNGA 2 cut(s) 600, 638
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 3 cut(s) 34, 174, 190
Hpy99I CGWCG 4 cut(s) 347, 400, 493, 496
HpyCH4IV ACGT 3 cut(s) 30, 36, 176
HpyCH4V TGCA 4 cut(s) 14, 316, 353, 519
HpySE526I ACGT 3 cut(s) 30, 36, 176
Hsp92I GRCGYC 3 cut(s) 30, 362, 453
Hsp92II CATG 4 cut(s) 14, 307, 596, 612
HspAI GCGC 4 cut(s) 241, 337, 362, 453
KasI GGCGCC 2 cut(s) 361, 452
Ksp22I TGATCA 2 cut(s) 39, 498
KspI CCGCGG 1 cut(s) 296
Kzo9I GATC 5 cut(s) 39, 96, 203, 276, 498
LmnI GCTCC 1 cut(s) 686
LpnPI CCDG 2 cut(s) 261, 660
LweI GCATC 2 cut(s) 298, 340
MaeI CTAG 2 cut(s) 185, 554
MaeII ACGT 3 cut(s) 30, 36, 176
MalI GATC 5 cut(s) 41, 98, 205, 278, 500
MboI GATC 5 cut(s) 39, 96, 203, 276, 498
MboII GAAGA 3 cut(s) 106, 135, 359
MflI RGATCY 1 cut(s) 203
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 2 cut(s) 514, 604
Mly113I GGCGCC 2 cut(s) 362, 453
MlyI GAGTC 2 cut(s) 101, 479
MmeI TCCRAC 1 cut(s) 405
MseI TTAA 2 cut(s) 537, 549
MspA1I CMGCKG 2 cut(s) 295, 391
MspI CCGG 2 cut(s) 248, 647
MspR9I CCNGG 1 cut(s) 248
Mva1269I GAATGC 1 cut(s) 265
MvnI CGCG 2 cut(s) 295, 337
NarI GGCGCC 2 cut(s) 362, 453
NciI CCSGG 1 cut(s) 248
NdeII GATC 5 cut(s) 39, 96, 203, 276, 498
NlaIII CATG 4 cut(s) 14, 307, 596, 612
NlaIV GGNNCC 2 cut(s) 363, 454
NmeAIII GCCGAG 1 cut(s) 430
NspI RCATGY 2 cut(s) 14, 596
PcsI WCGNNNNNNNCGW 1 cut(s) 480
PctI GAATGC 1 cut(s) 265
PfeI GAWTC 1 cut(s) 643
PleI GAGTC 2 cut(s) 101, 479
PluTI GGCGCC 2 cut(s) 365, 456
PpsI GAGTC 2 cut(s) 101, 479
PshBI ATTAAT 2 cut(s) 537, 549
PspN4I GGNNCC 2 cut(s) 363, 454
PspPI GGNCC 1 cut(s) 328
PsuI RGATCY 1 cut(s) 203
SacII CCGCGG 1 cut(s) 296
SaqAI TTAA 2 cut(s) 537, 549
Sau3AI GATC 5 cut(s) 39, 96, 203, 276, 498
Sau96I GGNCC 1 cut(s) 328
SchI GAGTC 2 cut(s) 101, 479
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 8
SetI ASST 5 cut(s) 33, 39, 179, 683, 702
SfaNI GCATC 2 cut(s) 298, 340
SfoI GGCGCC 2 cut(s) 363, 454
Sfr303I CCGCGG 1 cut(s) 296
SgrBI CCGCGG 1 cut(s) 296
Sse9I AATT 2 cut(s) 514, 604
SspDI GGCGCC 2 cut(s) 361, 452
SspI AATATT 2 cut(s) 532, 547
SspMI CTAG 2 cut(s) 185, 554
StyD4I CCNGG 1 cut(s) 246
TaiI ACGT 3 cut(s) 33, 39, 179
TaqI TCGA 1 cut(s) 342
TasI AATT 2 cut(s) 514, 604
TauI GCSGC 6 cut(s) 223, 226, 229, 388, 622, 668
TfiI GAWTC 1 cut(s) 643
Tru1I TTAA 2 cut(s) 537, 549
Tru9I TTAA 2 cut(s) 537, 549
TspDTI ATGAA 4 cut(s) 106, 292, 597, 617
VspI ATTAAT 2 cut(s) 537, 549
XapI RAATTY 1 cut(s) 604
XceI RCATGY 2 cut(s) 14, 596
XspI CTAG 2 cut(s) 185, 554
ZraI GACGTC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.