Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002628

Physical Location & Seq

Genomic Coordinates Forward (+)

17983065 .. 17984950

Gene Structure 1886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G238000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCTAAGATCAGACGAGGAAGACGCTTCAGAGCTCAAGATTGGAGACGATTTCTTGAAGGCGAAATGTTTAATGAATAGTGAGGTTGCCATTCTGCTTGAGCATAGATGTGATCAGATGAAGCATATGTCTGGCGATTCAACGACCCAACTTCCTCAAGTGTTGGAGAAATCACTGCAGTATGTTAAGCGCTTCAGTCGCTTCACGAATCAGGGCTCTGTAAAGCAAGTTCGAGAAGTCCTGAGTAGATACCAATTGGCTGAATTCGAGCTGGCTGTCATTGGGAATCTCTGTCCTGAAAATGTGGAAGAAGCCATGTCACTTGTGCCTTCCCTCAAGACCAAAGGACGTGGGCATGATGAAGAAGCCATTGAGAGACTGTTAAATGACCTCTTGATGATTAAAAAGTTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb4

Protein Analysis

139

Amino Acids

15.8

Weight (kDa)

5.31

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09920
fragaria_vesca	FvH4_1g22750
malus_domestica	MD06G1233600.v1.1 MD14G1240400.v1.1 MD15G1331500.v1.1
prunus_persica	Prupe.5G238000_v2.0.a1 Prupe.6G171500_v2.0.a1
pyrus_communis	pycom06g20820 pycom14g20190 pycom15g29350
rosa_chinensis	RchiOBHm_Chr2g0117051 RchiOBHm_Chr6g0293821 RchiOBHm_Chr7g0177821
rosa_laevigata	RLG00000005500 RLG00000011920 RLG00000018322
rosa_multiflora	Rmu_sc0002596.1_g000010 Rmu_sc0006214.1_g000009 Rmu_sc0009078.1_g000006 Rmu_ssc0000238.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126790 Rroxscaffold_3G00275520 Rroxscaffold_7G00173880
rosa_rugosa	Rorug02G0209800 Rorug06G0238200 Rorug06G0409600 Rorug06G0409700 Rorug06G0409800
rosa_samantha	Rh2AG265700 Rh2DG273000 Rh2DG292000 Rh6DG352400 Rh7AG009400 Rh7BG009500 Rh7CG009600 Rh7DG009500
rosa_wichuraiana	Rw0G019130 Rw2G020970 Rw6G030590 Rw7G000780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	263
AcuI	CTGAAG	2 cut(s)	12, 178
AfeI	AGCGCT	1 cut(s)	191
AgsI	TTSAA	2 cut(s)	58, 141
AjiI	CACGTC	1 cut(s)	350
AluBI	AGCT	2 cut(s)	34, 271
AluI	AGCT	2 cut(s)	34, 271
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	2 cut(s)	39, 370
Aor51HI	AGCGCT	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	192
BanII	GRGCYC	2 cut(s)	36, 218
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	36
BclI	TGATCA	1 cut(s)	112
BcoDI	GTCTC	2 cut(s)	39, 370
BfmI	CTRYAG	1 cut(s)	176
BfoI	RGCGCY	1 cut(s)	193
BmgBI	CACGTC	1 cut(s)	350
BpiI	GAAGAC	1 cut(s)	27
BpuEI	CTTGAG	4 cut(s)	20, 119, 141, 320
BseMII	CTCAG	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	36
BsmAI	GTCTC	2 cut(s)	39, 370
BsmBI	CGTCTC	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	36, 218
Bsp143I	GATC	2 cut(s)	8, 112
BspCNI	CTCAG	1 cut(s)	234
BspMAI	CTGCAG	1 cut(s)	180
BssMI	GATC	2 cut(s)	8, 112
Bst4CI	ACNGT	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	2 cut(s)	5, 242
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	2 cut(s)	11, 115
BstMAI	GTCTC	2 cut(s)	39, 370
BstMBI	GATC	2 cut(s)	8, 112
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	176
BstV2I	GAAGAC	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	350
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	1 cut(s)	273
CfoI	GCGC	1 cut(s)	192
CseI	GACGC	1 cut(s)	32
CspCI	CAANNNNNGTGG	2 cut(s)	331, 366
CviAII	CATG	2 cut(s)	316, 356
CviJI	RGCY	7 cut(s)	34, 216, 260, 271, 275, 314, 368
CviKI_1	RGCY	7 cut(s)	34, 216, 260, 271, 275, 314, 368
DdeI	CTNAG	2 cut(s)	5, 242
DpnI	GATC	2 cut(s)	10, 114
DpnII	GATC	2 cut(s)	8, 112
Ecl136II	GAGCTC	1 cut(s)	34
Eco24I	GRGCYC	2 cut(s)	36, 218
Eco47III	AGCGCT	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	34
Eco57I	CTGAAG	2 cut(s)	12, 178
EcoICRI	GAGCTC	1 cut(s)	34
EcoRI	GAATTC	1 cut(s)	263
EcoT38I	GRGCYC	2 cut(s)	36, 218
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	2 cut(s)	319, 359
FaiI	YATR	6 cut(s)	105, 126, 128, 183, 317, 357
FatI	CATG	2 cut(s)	315, 355
FauNDI	CATATG	1 cut(s)	126
FbaI	TGATCA	1 cut(s)	112
FriOI	GRGCYC	2 cut(s)	36, 218
GlaI	GCGC	1 cut(s)	191
HaeII	RGCGCY	1 cut(s)	193
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	319, 359
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	3 cut(s)	137, 208, 286
Hpy188I	TCNGA	3 cut(s)	13, 31, 117
Hpy188III	TCNNGA	8 cut(s)	37, 55, 205, 233, 241, 296, 337, 394
HpyAV	CCTTC	2 cut(s)	52, 339
HpyCH4III	ACNGT	1 cut(s)	381
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpyF3I	CTNAG	2 cut(s)	5, 242
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	2 cut(s)	319, 359
HspAI	GCGC	1 cut(s)	190
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	8, 112
LpnPI	CCDG	5 cut(s)	117, 197, 254, 257, 309
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	1 cut(s)	318
MalI	GATC	2 cut(s)	10, 114
MboI	GATC	2 cut(s)	8, 112
MboII	GAAGA	3 cut(s)	32, 320, 374
MfeI	CAATTG	1 cut(s)	254
MhlI	GDGCHC	2 cut(s)	36, 218
MluCI	AATT	2 cut(s)	254, 263
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	5 cut(s)	10, 76, 165, 344, 401
MseI	TTAA	4 cut(s)	71, 186, 383, 402
MslI	CAYNNNNRTG	1 cut(s)	108
MunI	CAATTG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	198
NdeI	CATATG	1 cut(s)	126
NdeII	GATC	2 cut(s)	8, 112
NlaIII	CATG	2 cut(s)	319, 359
NmuCI	GTSAC	1 cut(s)	318
PfeI	GAWTC	3 cut(s)	137, 208, 286
Psp124BI	GAGCTC	1 cut(s)	36
PsrI	GAACNNNNNNTAC	2 cut(s)	213, 245
PstI	CTGCAG	1 cut(s)	180
RseI	CAYNNNNRTG	1 cut(s)	108
SacI	GAGCTC	1 cut(s)	36
SaqAI	TTAA	4 cut(s)	71, 186, 383, 402
Sau3AI	GATC	2 cut(s)	8, 112
SduI	GDGCHC	2 cut(s)	36, 218
SetI	ASST	5 cut(s)	36, 87, 273, 352, 393
SfcI	CTRYAG	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	4 cut(s)	35, 98, 156, 335
SmoI	CTYRAG	4 cut(s)	35, 98, 156, 335
Sse9I	AATT	2 cut(s)	254, 263
SstI	GAGCTC	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	381
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	2 cut(s)	232, 267
TasI	AATT	2 cut(s)	254, 263
TfiI	GAWTC	3 cut(s)	137, 208, 286
Tru1I	TTAA	4 cut(s)	71, 186, 383, 402
Tru9I	TTAA	4 cut(s)	71, 186, 383, 402
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	318
Tsp45I	GTSAC	1 cut(s)	318
TspDTI	ATGAA	3 cut(s)	89, 134, 375
TspRI	CASTG	1 cut(s)	180
XapI	RAATTY	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.