Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002628

Physical Location & Seq

Genomic Coordinates Forward (+)

21264094 .. 21266685

Gene Structure 2592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g20190.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGTTGGCAGTTCTAAGATAATGTCAGGTCGGCCCAAAACTGAGGTCGGTTCGGACACTCGAGAGCTTTATATAACAGCTGAAAGCCCCAAATACATAATTCAATTTCTCATTAGGGATTTGCTTACGTTCCAGAAAGCATATCTAATTGGGGTCACGTTGATTGTCAAGAAACAAACGTCCATAGCTCTCTCAAAAATGCTAAGAGCAGAAGATGAAGACGCTTCAGAACTCAAACTTGGAGACGATTTTTCGAAGGCGAAGTGTCTGATGAATAGTGAGGTTGCCATTCTTCTTGAGCACAGATGTGATCAGATGAAGCATATGTCAGGCGAATCAATGCACCAACTTCCCCAAGTGCTGGAGAAATCACTGCAGTATGTTAAGCGCTTCAGTCGCTTCACGAATCAGGGCTCTGTGAAGCAAGTTCGAGAAGTTCTCGGTAGATACCAGTTGGCTGAATTCGAGCTTGCTGTGATTGGAAATCTTTGTCCTGAAACTGTGGAGGAAGCCAAGGCAGTTGTGCCTTCCCTCAAGACGAAAGGACGTGGGCACGATGATGAAGCCATTGACAGACTGTTGAATGACCTAATGATGATTAAAAAGTTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb4

Protein Analysis

205

Amino Acids

23.11

Weight (kDa)

7.69

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09920
fragaria_vesca	FvH4_1g22750
malus_domestica	MD06G1233600.v1.1 MD14G1240400.v1.1 MD15G1331500.v1.1
prunus_persica	Prupe.5G238000_v2.0.a1 Prupe.6G171500_v2.0.a1
pyrus_communis	pycom06g20820 pycom14g20190 pycom15g29350
rosa_chinensis	RchiOBHm_Chr2g0117051 RchiOBHm_Chr6g0293821 RchiOBHm_Chr7g0177821
rosa_laevigata	RLG00000005500 RLG00000011920 RLG00000018322
rosa_multiflora	Rmu_sc0002596.1_g000010 Rmu_sc0006214.1_g000009 Rmu_sc0009078.1_g000006 Rmu_ssc0000238.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126790 Rroxscaffold_3G00275520 Rroxscaffold_7G00173880
rosa_rugosa	Rorug02G0209800 Rorug06G0238200 Rorug06G0409600 Rorug06G0409700 Rorug06G0409800
rosa_samantha	Rh2AG265700 Rh2DG273000 Rh2DG292000 Rh6DG352400 Rh7AG009400 Rh7BG009500 Rh7CG009600 Rh7DG009500
rosa_wichuraiana	Rw0G019130 Rw2G020970 Rw6G030590 Rw7G000780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	361
AcsI	RAATTY	1 cut(s)	461
AcuI	CTGAAG	2 cut(s)	210, 376
AfeI	AGCGCT	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	361
AgsI	TTSAA	2 cut(s)	104, 583
AjiI	CACGTC	1 cut(s)	548
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AleI	CACNNNNGTG	1 cut(s)	306
AluBI	AGCT	4 cut(s)	67, 80, 188, 469
AluI	AGCT	4 cut(s)	67, 80, 188, 469
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	1 cut(s)	237
Ama87I	CYCGRG	1 cut(s)	60
Aor51HI	AGCGCT	1 cut(s)	389
AoxI	GGCC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	461
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
AspLEI	GCGC	1 cut(s)	390
AspS9I	GGNCC	1 cut(s)	33
AsuII	TTCGAA	1 cut(s)	254
AvaI	CYCGRG	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	555
BanII	GRGCYC	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	303
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	374
BfoI	RGCGCY	1 cut(s)	391
BmeT110I	CYCGRG	1 cut(s)	60
BmgBI	CACGTC	1 cut(s)	548
BmgT120I	GGNCC	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	225
BplI	GAGNNNNNCTC	2 cut(s)	423, 455
BpmI	CTGGAG	1 cut(s)	383
Bpu14I	TTCGAA	1 cut(s)	254
BpuEI	CTTGAG	2 cut(s)	317, 518
BsaJI	CCNNGG	1 cut(s)	513
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	451
BseDI	CCNNGG	1 cut(s)	513
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	451
BseSI	GKGCMC	1 cut(s)	555
BshFI	GGCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	303
BsiHKCI	CYCGRG	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	1 cut(s)	237
BsmBI	CGTCTC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	34
BsoBI	CYCGRG	1 cut(s)	60
Bsp119I	TTCGAA	1 cut(s)	254
Bsp1286I	GDGCHC	3 cut(s)	303, 416, 555
Bsp143I	GATC	1 cut(s)	310
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	1 cut(s)	34
BspMAI	CTGCAG	1 cut(s)	378
BspT104I	TTCGAA	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	451
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	1 cut(s)	310
BssT1I	CCWWGG	1 cut(s)	513
Bst4CI	ACNGT	2 cut(s)	502, 579
BstBI	TTCGAA	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	471
BstDEI	CTNAG	3 cut(s)	15, 42, 203
BstH2I	RGCGCY	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	1 cut(s)	396
BstSFI	CTRYAG	1 cut(s)	374
BstSLI	GKGCMC	1 cut(s)	555
BstV2I	GAAGAC	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	548
BtsI	GCAGTG	1 cut(s)	371
BtsIMutI	CAGTG	1 cut(s)	371
Cac8I	GCNNGC	1 cut(s)	471
CfoI	GCGC	1 cut(s)	390
Cfr13I	GGNCC	1 cut(s)	33
CseI	GACGC	1 cut(s)	230
DdeI	CTNAG	3 cut(s)	15, 42, 203
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	513
Eco24I	GRGCYC	1 cut(s)	416
Eco47III	AGCGCT	1 cut(s)	389
Eco57I	CTGAAG	2 cut(s)	210, 376
Eco88I	CYCGRG	1 cut(s)	60
EcoRI	GAATTC	1 cut(s)	461
EcoT14I	CCWWGG	1 cut(s)	513
EcoT38I	GRGCYC	1 cut(s)	416
ErhI	CCWWGG	1 cut(s)	513
Esp3I	CGTCTC	1 cut(s)	237
FaiI	YATR	8 cut(s)	72, 74, 98, 142, 185, 324, 326, 381
FauNDI	CATATG	1 cut(s)	324
FbaI	TGATCA	1 cut(s)	310
FriOI	GRGCYC	1 cut(s)	416
GlaI	GCGC	1 cut(s)	389
GsuI	CTGGAG	1 cut(s)	383
HaeII	RGCGCY	1 cut(s)	391
HaeIII	GGCC	1 cut(s)	34
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	1 cut(s)	390
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HinfI	GANTC	2 cut(s)	335, 406
Hpy188I	TCNGA	4 cut(s)	55, 229, 270, 315
Hpy188III	TCNNGA	8 cut(s)	62, 133, 169, 296, 403, 431, 494, 535
HpyAV	CCTTC	2 cut(s)	250, 537
HpyCH4III	ACNGT	2 cut(s)	502, 579
HpyCH4IV	ACGT	4 cut(s)	128, 158, 179, 547
HpyCH4V	TGCA	2 cut(s)	343, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	396
HpyF3I	CTNAG	3 cut(s)	15, 42, 203
HpySE526I	ACGT	4 cut(s)	128, 158, 179, 547
HspAI	GCGC	1 cut(s)	388
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	1 cut(s)	310
LpnPI	CCDG	7 cut(s)	12, 146, 315, 347, 395, 464, 507
MaeII	ACGT	4 cut(s)	128, 158, 179, 547
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	3 cut(s)	224, 230, 284
MhlI	GDGCHC	3 cut(s)	303, 416, 555
MluCI	AATT	4 cut(s)	99, 104, 147, 461
MnlI	CCTC	4 cut(s)	37, 274, 499, 542
MseI	TTAA	2 cut(s)	384, 600
MslI	CAYNNNNRTG	2 cut(s)	306, 558
MspA1I	CMGCKG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	396
NdeI	CATATG	1 cut(s)	324
NdeII	GATC	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	154
NspV	TTCGAA	1 cut(s)	254
OliI	CACNNNNGTG	1 cut(s)	306
PaeR7I	CTCGAG	1 cut(s)	60
PfeI	GAWTC	2 cut(s)	335, 406
PflMI	CCANNNNNTGG	1 cut(s)	361
PspPI	GGNCC	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	378
PvuII	CAGCTG	1 cut(s)	80
RseI	CAYNNNNRTG	2 cut(s)	306, 558
SaqAI	TTAA	2 cut(s)	384, 600
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	1 cut(s)	33
SduI	GDGCHC	3 cut(s)	303, 416, 555
SfcI	CTRYAG	1 cut(s)	374
Sfr274I	CTCGAG	1 cut(s)	60
SfuI	TTCGAA	1 cut(s)	254
SlaI	CTCGAG	1 cut(s)	60
SmiMI	CAYNNNNRTG	2 cut(s)	306, 558
SmlI	CTYRAG	3 cut(s)	60, 296, 533
SmoI	CTYRAG	3 cut(s)	60, 296, 533
Sse9I	AATT	4 cut(s)	99, 104, 147, 461
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	2 cut(s)	502, 579
TaiI	ACGT	4 cut(s)	131, 161, 182, 550
TaqI	TCGA	4 cut(s)	61, 254, 430, 465
TasI	AATT	4 cut(s)	99, 104, 147, 461
TfiI	GAWTC	2 cut(s)	335, 406
Tru1I	TTAA	2 cut(s)	384, 600
Tru9I	TTAA	2 cut(s)	384, 600
TscAI	CASTG	1 cut(s)	378
TseFI	GTSAC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	4 cut(s)	231, 287, 332, 576
TspRI	CASTG	1 cut(s)	378
Van91I	CCANNNNNTGG	1 cut(s)	361
XapI	RAATTY	1 cut(s)	461
XhoI	CTCGAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.