DNA-directed RNA-polymerase II subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G09920 |
| fragaria_vesca | FvH4_1g22750 |
| malus_domestica | MD06G1233600.v1.1 MD14G1240400.v1.1 MD15G1331500.v1.1 |
| prunus_persica | Prupe.5G238000_v2.0.a1 Prupe.6G171500_v2.0.a1 |
| pyrus_communis | pycom06g20820 pycom14g20190 pycom15g29350 |
| rosa_chinensis | RchiOBHm_Chr2g0117051 RchiOBHm_Chr6g0293821 RchiOBHm_Chr7g0177821 |
| rosa_laevigata | RLG00000005500 RLG00000011920 RLG00000018322 |
| rosa_multiflora | Rmu_sc0002596.1_g000010 Rmu_sc0006214.1_g000009 Rmu_sc0009078.1_g000006 Rmu_ssc0000238.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00126790 Rroxscaffold_3G00275520 Rroxscaffold_7G00173880 |
| rosa_rugosa | Rorug02G0209800 Rorug06G0238200 Rorug06G0409600 Rorug06G0409700 Rorug06G0409800 |
| rosa_samantha | Rh2AG265700 Rh2DG273000 Rh2DG292000 Rh6DG352400 Rh7AG009400 Rh7BG009500 Rh7CG009600 Rh7DG009500 |
| rosa_wichuraiana | Rw0G019130 Rw2G020970 Rw6G030590 Rw7G000780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 2 cut(s) | 12, 175 |
| AgsI | TTSAA | 2 cut(s) | 58, 141 |
| AluBI | AGCT | 1 cut(s) | 34 |
| AluI | AGCT | 1 cut(s) | 34 |
| Alw21I | GWGCWC | 1 cut(s) | 36 |
| ApeKI | GCWGC | 1 cut(s) | 172 |
| BanII | GRGCYC | 1 cut(s) | 36 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 78, 110 |
| BbsI | GAAGAC | 1 cut(s) | 27 |
| Bbv12I | GWGCWC | 1 cut(s) | 36 |
| BbvI | GCAGC | 1 cut(s) | 159 |
| BccI | CCATC | 1 cut(s) | 251 |
| BciVI | GTATCC | 1 cut(s) | 246 |
| BclI | TGATCA | 1 cut(s) | 112 |
| BfmI | CTRYAG | 1 cut(s) | 173 |
| BfuI | GTATCC | 1 cut(s) | 246 |
| BisI | GCNGC | 1 cut(s) | 173 |
| BlsI | GCNGC | 1 cut(s) | 174 |
| BpiI | GAAGAC | 1 cut(s) | 27 |
| BpuEI | CTTGAG | 1 cut(s) | 119 |
| BseGI | GGATG | 1 cut(s) | 243 |
| BseXI | GCAGC | 1 cut(s) | 159 |
| BsiHKAI | GWGCWC | 1 cut(s) | 36 |
| Bsp1286I | GDGCHC | 1 cut(s) | 36 |
| Bsp143I | GATC | 1 cut(s) | 112 |
| BspMAI | CTGCAG | 1 cut(s) | 177 |
| BssMI | GATC | 1 cut(s) | 112 |
| BstF5I | GGATG | 1 cut(s) | 243 |
| BstKTI | GATC | 1 cut(s) | 115 |
| BstMBI | GATC | 1 cut(s) | 112 |
| BstSFI | CTRYAG | 1 cut(s) | 173 |
| BstV1I | GCAGC | 1 cut(s) | 159 |
| BstV2I | GAAGAC | 1 cut(s) | 27 |
| BsuI | GTATCC | 1 cut(s) | 246 |
| BtsCI | GGATG | 1 cut(s) | 243 |
| CseI | GACGC | 1 cut(s) | 32 |
| CviJI | RGCY | 3 cut(s) | 34, 89, 213 |
| CviKI_1 | RGCY | 3 cut(s) | 34, 89, 213 |
| DpnI | GATC | 1 cut(s) | 114 |
| DpnII | GATC | 1 cut(s) | 112 |
| Ecl136II | GAGCTC | 1 cut(s) | 34 |
| Eco24I | GRGCYC | 1 cut(s) | 36 |
| Eco53kI | GAGCTC | 1 cut(s) | 34 |
| Eco57I | CTGAAG | 2 cut(s) | 12, 175 |
| EcoICRI | GAGCTC | 1 cut(s) | 34 |
| EcoT38I | GRGCYC | 1 cut(s) | 36 |
| FaiI | YATR | 3 cut(s) | 105, 111, 180 |
| FbaI | TGATCA | 1 cut(s) | 112 |
| Fnu4HI | GCNGC | 1 cut(s) | 173 |
| FokI | GGATG | 1 cut(s) | 230 |
| FriOI | GRGCYC | 1 cut(s) | 36 |
| Fsp4HI | GCNGC | 1 cut(s) | 173 |
| GluI | GCNGC | 1 cut(s) | 173 |
| HgaI | GACGC | 1 cut(s) | 32 |
| HinfI | GANTC | 2 cut(s) | 137, 205 |
| Hpy166II | GTNNAC | 1 cut(s) | 201 |
| Hpy188I | TCNGA | 4 cut(s) | 31, 44, 72, 117 |
| Hpy188III | TCNNGA | 4 cut(s) | 98, 163, 202, 230 |
| Hpy8I | GTNNAC | 1 cut(s) | 201 |
| HpyAV | CCTTC | 3 cut(s) | 52, 249, 257 |
| HpyCH4V | TGCA | 1 cut(s) | 175 |
| Ksp22I | TGATCA | 1 cut(s) | 112 |
| Kzo9I | GATC | 1 cut(s) | 112 |
| LpnPI | CCDG | 1 cut(s) | 117 |
| Lsp1109I | GCAGC | 1 cut(s) | 159 |
| MalI | GATC | 1 cut(s) | 114 |
| MboI | GATC | 1 cut(s) | 112 |
| MboII | GAAGA | 3 cut(s) | 26, 32, 86 |
| MhlI | GDGCHC | 1 cut(s) | 36 |
| MluCI | AATT | 1 cut(s) | 256 |
| MnlI | CCTC | 2 cut(s) | 40, 76 |
| MslI | CAYNNNNRTG | 1 cut(s) | 108 |
| NdeII | GATC | 1 cut(s) | 112 |
| PfeI | GAWTC | 2 cut(s) | 137, 205 |
| PkrI | GCNGC | 1 cut(s) | 174 |
| Psp124BI | GAGCTC | 1 cut(s) | 36 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 210, 242 |
| PstI | CTGCAG | 1 cut(s) | 177 |
| RseI | CAYNNNNRTG | 1 cut(s) | 108 |
| SacI | GAGCTC | 1 cut(s) | 36 |
| SatI | GCNGC | 1 cut(s) | 173 |
| Sau3AI | GATC | 1 cut(s) | 112 |
| SduI | GDGCHC | 1 cut(s) | 36 |
| SetI | ASST | 2 cut(s) | 36, 87 |
| SfcI | CTRYAG | 1 cut(s) | 173 |
| SgeI | CNNG | 9 cut(s) | 110, 144, 167, 175, 196, 214, 221, 236, 242 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 108 |
| SmlI | CTYRAG | 1 cut(s) | 98 |
| SmoI | CTYRAG | 1 cut(s) | 98 |
| Sse9I | AATT | 1 cut(s) | 256 |
| SstI | GAGCTC | 1 cut(s) | 36 |
| TaqI | TCGA | 2 cut(s) | 162, 229 |
| TasI | AATT | 1 cut(s) | 256 |
| TfiI | GAWTC | 2 cut(s) | 137, 205 |
| TseI | GCWGC | 1 cut(s) | 172 |
| TspDTI | ATGAA | 3 cut(s) | 33, 89, 134 |