Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002628

Physical Location & Seq

Genomic Coordinates Forward (+)

23716701 .. 23718607

Gene Structure 1907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20820.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCAGAATTCGATTATTAACCTAAAACAAAAACTTGGGTTAATTCAATTCCTCAATAGGGATTTGTTTACGTTCAAGAAAGCATATCTAGTTGGGGTCACATTGATAGCTCTCTCAAAAATGCTAAGAGCAGAAGATGAAGACGCTTCAGAACTCAAACTTGGAGACGATTTTTTGAAGGCAAAGTGTCTAATGAATAGTGAGGTTGCCATTCTTCTTGAGCACAGATGTGATCAGATGAAGCATATGTCCGGCGAATCAATGCACCAACTTCCCCAAGTGTTGGAGAAATCACTGCAGTATGTTAAGCGCTTTAGTCGCTTCACGAATCAGGGCTCTGTGAAGCAAGTTCGAGAAGTTCTCAGTAGATACCAGTTGGCTGAATTCGAGCTTGCTGTGATTGGAAATCTTTGTCCTGAAACTGTGGAGGAAGCCAAGGCAGTTGTGCCTTCTCTCAAGACGAAAGGACGTGGGCACGATGATGAAGCCATTGACAGACTGTTGAATGACCTAATGATGATTAAAAAGTTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb4

Protein Analysis

179

Amino Acids

20.37

Weight (kDa)

7.71

Isoelectric Point (pI)

32.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09920
fragaria_vesca	FvH4_1g22750
malus_domestica	MD06G1233600.v1.1 MD14G1240400.v1.1 MD15G1331500.v1.1
prunus_persica	Prupe.5G238000_v2.0.a1 Prupe.6G171500_v2.0.a1
pyrus_communis	pycom06g20820 pycom14g20190 pycom15g29350
rosa_chinensis	RchiOBHm_Chr2g0117051 RchiOBHm_Chr6g0293821 RchiOBHm_Chr7g0177821
rosa_laevigata	RLG00000005500 RLG00000011920 RLG00000018322
rosa_multiflora	Rmu_sc0002596.1_g000010 Rmu_sc0006214.1_g000009 Rmu_sc0009078.1_g000006 Rmu_ssc0000238.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126790 Rroxscaffold_3G00275520 Rroxscaffold_7G00173880
rosa_rugosa	Rorug02G0209800 Rorug06G0238200 Rorug06G0409600 Rorug06G0409700 Rorug06G0409800
rosa_samantha	Rh2AG265700 Rh2DG273000 Rh2DG292000 Rh6DG352400 Rh7AG009400 Rh7BG009500 Rh7CG009600 Rh7DG009500
rosa_wichuraiana	Rw0G019130 Rw2G020970 Rw6G030590 Rw7G000780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	283
AcsI	RAATTY	2 cut(s)	7, 383
AcuI	CTGAAG	1 cut(s)	132
AfeI	AGCGCT	1 cut(s)	311
AfiI	CCNNNNNNNGG	2 cut(s)	58, 283
AgsI	TTSAA	4 cut(s)	47, 76, 178, 505
AjiI	CACGTC	1 cut(s)	470
AjuI	GAANNNNNNNTTGG	2 cut(s)	144, 176
AleI	CACNNNNGTG	1 cut(s)	228
AluBI	AGCT	2 cut(s)	110, 391
AluI	AGCT	2 cut(s)	110, 391
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	1 cut(s)	159
Aor51HI	AGCGCT	1 cut(s)	311
ApoI	RAATTY	2 cut(s)	7, 383
AspLEI	GCGC	1 cut(s)	312
BaeGI	GKGCMC	1 cut(s)	477
BanII	GRGCYC	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	225
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	296
BfoI	RGCGCY	1 cut(s)	313
BmgBI	CACGTC	1 cut(s)	470
BpiI	GAAGAC	1 cut(s)	147
BplI	GAGNNNNNCTC	2 cut(s)	345, 377
BpuEI	CTTGAG	2 cut(s)	239, 440
BsaJI	CCNNGG	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 283
Bse1I	ACTGG	1 cut(s)	373
BseDI	CCNNGG	1 cut(s)	435
BseLI	CCNNNNNNNGG	2 cut(s)	58, 283
BseMII	CTCAG	1 cut(s)	376
BseNI	ACTGG	1 cut(s)	373
BseSI	GKGCMC	1 cut(s)	477
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	58, 283
BsmAI	GTCTC	1 cut(s)	159
BsmBI	CGTCTC	1 cut(s)	159
Bsp1286I	GDGCHC	3 cut(s)	225, 338, 477
Bsp143I	GATC	1 cut(s)	232
BspCNI	CTCAG	1 cut(s)	375
BspMAI	CTGCAG	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	373
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	1 cut(s)	232
BssT1I	CCWWGG	1 cut(s)	435
Bst4CI	ACNGT	2 cut(s)	424, 501
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	2 cut(s)	125, 362
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	318
BstSFI	CTRYAG	1 cut(s)	296
BstSLI	GKGCMC	1 cut(s)	477
BstV2I	GAAGAC	1 cut(s)	147
BtrI	CACGTC	1 cut(s)	470
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	1 cut(s)	293
Cac8I	GCNNGC	1 cut(s)	393
CfoI	GCGC	1 cut(s)	312
CseI	GACGC	1 cut(s)	152
CviJI	RGCY	6 cut(s)	110, 336, 380, 391, 434, 488
CviKI_1	RGCY	6 cut(s)	110, 336, 380, 391, 434, 488
DdeI	CTNAG	2 cut(s)	125, 362
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	435
Eco24I	GRGCYC	1 cut(s)	338
Eco47III	AGCGCT	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	132
EcoRI	GAATTC	2 cut(s)	7, 383
EcoT14I	CCWWGG	1 cut(s)	435
EcoT38I	GRGCYC	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	435
Esp3I	CGTCTC	1 cut(s)	159
FaiI	YATR	4 cut(s)	85, 246, 248, 303
FauNDI	CATATG	1 cut(s)	246
FbaI	TGATCA	1 cut(s)	232
FriOI	GRGCYC	1 cut(s)	338
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	1 cut(s)	311
HaeII	RGCGCY	1 cut(s)	313
HapII	CCGG	1 cut(s)	252
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	1 cut(s)	312
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HinfI	GANTC	2 cut(s)	257, 328
HpaII	CCGG	1 cut(s)	252
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	2 cut(s)	151, 237
Hpy188III	TCNNGA	6 cut(s)	76, 218, 325, 353, 416, 457
Hpy8I	GTNNAC	1 cut(s)	69
HpyAV	CCTTC	2 cut(s)	172, 459
HpyCH4III	ACNGT	2 cut(s)	424, 501
HpyCH4IV	ACGT	2 cut(s)	71, 469
HpyCH4V	TGCA	3 cut(s)	4, 265, 298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	318
HpyF3I	CTNAG	2 cut(s)	125, 362
HpySE526I	ACGT	2 cut(s)	71, 469
HspAI	GCGC	1 cut(s)	310
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	232
LpnPI	CCDG	4 cut(s)	265, 317, 386, 429
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	2 cut(s)	71, 469
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	3 cut(s)	146, 152, 206
MhlI	GDGCHC	3 cut(s)	225, 338, 477
MluCI	AATT	4 cut(s)	7, 42, 47, 383
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	3 cut(s)	62, 196, 421
MseI	TTAA	4 cut(s)	18, 41, 306, 522
MslI	CAYNNNNRTG	2 cut(s)	228, 480
MspI	CCGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	318
NdeI	CATATG	1 cut(s)	246
NdeII	GATC	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	97
OliI	CACNNNNGTG	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	257, 328
PflMI	CCANNNNNTGG	1 cut(s)	283
PstI	CTGCAG	1 cut(s)	300
RseI	CAYNNNNRTG	2 cut(s)	228, 480
SaqAI	TTAA	4 cut(s)	18, 41, 306, 522
Sau3AI	GATC	1 cut(s)	232
SduI	GDGCHC	3 cut(s)	225, 338, 477
SetI	ASST	7 cut(s)	24, 74, 112, 207, 393, 472, 513
SfcI	CTRYAG	1 cut(s)	296
SmiMI	CAYNNNNRTG	2 cut(s)	228, 480
SmlI	CTYRAG	2 cut(s)	218, 455
SmoI	CTYRAG	2 cut(s)	218, 455
Sse9I	AATT	4 cut(s)	7, 42, 47, 383
SspMI	CTAG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	2 cut(s)	424, 501
TaiI	ACGT	2 cut(s)	74, 472
TaqI	TCGA	3 cut(s)	11, 352, 387
TasI	AATT	4 cut(s)	7, 42, 47, 383
TfiI	GAWTC	2 cut(s)	257, 328
Tru1I	TTAA	4 cut(s)	18, 41, 306, 522
Tru9I	TTAA	4 cut(s)	18, 41, 306, 522
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	4 cut(s)	153, 209, 254, 498
TspRI	CASTG	1 cut(s)	300
Van91I	CCANNNNNTGG	1 cut(s)	283
XapI	RAATTY	2 cut(s)	7, 383
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.