Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002628

Physical Location & Seq

Genomic Coordinates Reverse (-)

26098118 .. 26099913

Gene Structure 1796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g29350.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTCTGGGGAAGAGGAAGAAAACGCCGCCGAGCTTAAAATCGGAGACGAGTTTTTGAAGGCAAAATGCTTAATGAACTGCGAAGTTTCTTTGATTCTGGAACACAAGTTCGAGCAGCTTCAACAGATGTCTGATGATCCCAGGAACCAAATTTCTCAAGTATTTGAGAAGTCACTGCAGTATGTGAAGCGCTTCAGCCGTTACAAAAATCCCGACGCTGTTAAACAAGTTCGAGAAATCCTTAGTAGATATCAGCTGACTGAGTTCGAGCTCTGTGTTCTTGGCAATCTCTGCCCTGAAACTGTTGAGGAAGCTATTGCTATGGTTCCATCTATAAAGGCAAAAGGACGGGTTCATGACGATGATGCAATTGATAAAATGTTGAATGACCTGGCGCTAATCAAGAAATTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000428 GO:0000932 GO:0000956 GO:0003674 GO:0003824 GO:0003899 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006406 GO:0006417 GO:0006446 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016591 GO:0016604 GO:0016607 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0019439 GO:0022607 GO:0022613 GO:0022618 GO:0030880 GO:0031123 GO:0031124 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031369 GO:0031503 GO:0031974 GO:0031981 GO:0031990 GO:0032268 GO:0032270 GO:0032774 GO:0032991 GO:0033036 GO:0033554 GO:0034062 GO:0034248 GO:0034250 GO:0034402 GO:0034605 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0035770 GO:0036464 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0045727 GO:0045948 GO:0046483 GO:0046700 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051246 GO:0051247 GO:0051641 GO:0051649 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576 GO:1902494 GO:1990234 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb4

Protein Analysis

139

Amino Acids

15.93

Weight (kDa)

4.98

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09920
fragaria_vesca	FvH4_1g22750
malus_domestica	MD06G1233600.v1.1 MD14G1240400.v1.1 MD15G1331500.v1.1
prunus_persica	Prupe.5G238000_v2.0.a1 Prupe.6G171500_v2.0.a1
pyrus_communis	pycom06g20820 pycom14g20190 pycom15g29350
rosa_chinensis	RchiOBHm_Chr2g0117051 RchiOBHm_Chr6g0293821 RchiOBHm_Chr7g0177821
rosa_laevigata	RLG00000005500 RLG00000011920 RLG00000018322
rosa_multiflora	Rmu_sc0002596.1_g000010 Rmu_sc0006214.1_g000009 Rmu_sc0009078.1_g000006 Rmu_ssc0000238.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126790 Rroxscaffold_3G00275520 Rroxscaffold_7G00173880
rosa_rugosa	Rorug02G0209800 Rorug06G0238200 Rorug06G0409600 Rorug06G0409700 Rorug06G0409800
rosa_samantha	Rh2AG265700 Rh2DG273000 Rh2DG292000 Rh6DG352400 Rh7AG009400 Rh7BG009500 Rh7CG009600 Rh7DG009500
rosa_wichuraiana	Rw0G019130 Rw2G020970 Rw6G030590 Rw7G000780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	1 cut(s)	131
AcsI	RAATTY	2 cut(s)	150, 407
AcuI	CTGAAG	1 cut(s)	178
AfeI	AGCGCT	1 cut(s)	191
AgsI	TTSAA	3 cut(s)	58, 122, 385
AjnI	CCWGG	2 cut(s)	140, 390
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	5 cut(s)	34, 118, 256, 271, 314
AluI	AGCT	5 cut(s)	34, 118, 256, 271, 314
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	131
Aor51HI	AGCGCT	1 cut(s)	191
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	2 cut(s)	150, 407
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	2 cut(s)	192, 397
BanII	GRGCYC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	337
BceAI	ACGGC	1 cut(s)	183
BciT130I	CCWGG	2 cut(s)	142, 392
BcoDI	GTCTC	1 cut(s)	39
BfmI	CTRYAG	1 cut(s)	176
BfoI	RGCGCY	2 cut(s)	193, 398
BisI	GCNGC	2 cut(s)	27, 116
BlsI	GCNGC	2 cut(s)	28, 117
Bme1390I	CCNGG	2 cut(s)	142, 392
BmiI	GGNNCC	2 cut(s)	146, 327
BmrFI	CCNGG	2 cut(s)	142, 392
BmsI	GCATC	1 cut(s)	355
BpuEI	CTTGAG	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	140
BseBI	CCWGG	2 cut(s)	142, 392
BseDI	CCNNGG	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	273
BsmAI	GTCTC	1 cut(s)	39
BsmBI	CGTCTC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	136
BspACI	CCGC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	253
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	146, 327
BspMAI	CTGCAG	1 cut(s)	180
BspPI	GGATC	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	140
BssMI	GATC	1 cut(s)	136
Bst2UI	CCWGG	2 cut(s)	142, 392
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	1 cut(s)	6
BstAPI	GCANNNNNTGC	1 cut(s)	291
BstDEI	CTNAG	2 cut(s)	242, 261
BstH2I	RGCGCY	2 cut(s)	193, 398
BstHHI	GCGC	2 cut(s)	192, 397
BstKTI	GATC	1 cut(s)	139
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	291
BstNI	CCWGG	2 cut(s)	142, 392
BstSCI	CCNGG	2 cut(s)	140, 390
BstSFI	CTRYAG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	127
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	173
CciI	TCATGA	1 cut(s)	355
CfoI	GCGC	2 cut(s)	192, 397
CseI	GACGC	1 cut(s)	224
CviAII	CATG	1 cut(s)	356
CviJI	RGCY	6 cut(s)	34, 118, 198, 256, 271, 314
CviKI_1	RGCY	6 cut(s)	34, 118, 198, 256, 271, 314
DdeI	CTNAG	2 cut(s)	242, 261
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
Ecl136II	GAGCTC	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	273
Eco32I	GATATC	1 cut(s)	251
Eco47III	AGCGCT	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	140, 390
EcoRV	GATATC	1 cut(s)	251
EcoT38I	GRGCYC	1 cut(s)	273
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	1 cut(s)	359
FaiI	YATR	4 cut(s)	183, 323, 335, 357
FatI	CATG	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	27, 116
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	2 cut(s)	27, 116
GlaI	GCGC	2 cut(s)	191, 396
GluI	GCNGC	2 cut(s)	27, 116
HaeII	RGCGCY	2 cut(s)	193, 398
HgaI	GACGC	1 cut(s)	224
HhaI	GCGC	2 cut(s)	192, 397
Hin1II	CATG	1 cut(s)	359
Hin6I	GCGC	2 cut(s)	190, 395
HinP1I	GCGC	2 cut(s)	190, 395
HinfI	GANTC	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	44, 133
Hpy188III	TCNNGA	5 cut(s)	98, 212, 233, 356, 403
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	52
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4V	TGCA	2 cut(s)	178, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	291
HpyF3I	CTNAG	2 cut(s)	242, 261
Hsp92II	CATG	1 cut(s)	359
HspAI	GCGC	2 cut(s)	190, 395
Kzo9I	GATC	1 cut(s)	136
LpnPI	CCDG	6 cut(s)	83, 127, 154, 309, 377, 404
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	1 cut(s)	355
MaeIII	GTNAC	2 cut(s)	171, 200
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	2 cut(s)	23, 29
MfeI	CAATTG	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	3 cut(s)	150, 369, 407
MnlI	CCTC	2 cut(s)	7, 301
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	3 cut(s)	36, 71, 222
MslI	CAYNNNNRTG	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	256
MspR9I	CCNGG	2 cut(s)	142, 392
MunI	CAATTG	1 cut(s)	369
MvaI	CCWGG	2 cut(s)	142, 392
MwoI	GCNNNNNNNGC	1 cut(s)	291
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	359
NlaIV	GGNNCC	2 cut(s)	146, 327
NmeAIII	GCCGAG	1 cut(s)	55
NmuCI	GTSAC	1 cut(s)	171
PagI	TCATGA	1 cut(s)	355
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	28, 117
Psp124BI	GAGCTC	1 cut(s)	273
Psp6I	CCWGG	2 cut(s)	140, 390
PspGI	CCWGG	2 cut(s)	140, 390
PspN4I	GGNNCC	2 cut(s)	146, 327
PstI	CTGCAG	1 cut(s)	180
PvuII	CAGCTG	1 cut(s)	256
RseI	CAYNNNNRTG	1 cut(s)	360
SacI	GAGCTC	1 cut(s)	273
SaqAI	TTAA	3 cut(s)	36, 71, 222
SatI	GCNGC	2 cut(s)	27, 116
Sau3AI	GATC	1 cut(s)	136
ScrFI	CCNGG	2 cut(s)	142, 392
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	6 cut(s)	36, 120, 258, 273, 316, 393
SfaNI	GCATC	1 cut(s)	355
SfcI	CTRYAG	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
Sse9I	AATT	3 cut(s)	150, 369, 407
SsiI	CCGC	1 cut(s)	27
SstI	GAGCTC	1 cut(s)	273
StyD4I	CCNGG	2 cut(s)	140, 390
TaaI	ACNGT	1 cut(s)	304
TaqI	TCGA	3 cut(s)	111, 232, 267
TasI	AATT	3 cut(s)	150, 369, 407
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	3 cut(s)	36, 71, 222
Tru9I	TTAA	3 cut(s)	36, 71, 222
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	171
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	171
TspDTI	ATGAA	2 cut(s)	89, 344
TspRI	CASTG	1 cut(s)	180
XapI	RAATTY	2 cut(s)	150, 407
XmnI	GAANNNNTTC	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.