Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002596.1

Orthogroup ID

OG0002628

Physical Location & Seq

Genomic Coordinates Reverse (-)

35777 .. 36193

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002596.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atggttgaagaaaacgctgccgagctcaaaatcggggatgagttcttaaaggcgaagtgtctaatgaactgcgaagtttctttgattcttgaacacaggttggcgcagcttcaacagatgtctgatgatcccaagaacaaccaagtttctcaagtatttgacaagtcactgcagtatgtgaagcgctttagccgctacaagaatcctgatgccgttagacaagtgcgagaaacccttagtaattatcaattgactgagtttgagctctgtgttcttggcaatctctgcactgaaacagttgacgaagctattgctatggtgccaactctgaagaccaaaggtcgacggatgcatgatgatgatgatgcaattcaaaacatgttaagagacctggctcttatcaagaaattttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000428 GO:0000932 GO:0000956 GO:0003674 GO:0003824 GO:0003899 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006406 GO:0006417 GO:0006446 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016591 GO:0016604 GO:0016607 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0019439 GO:0022607 GO:0022613 GO:0022618 GO:0030880 GO:0031123 GO:0031124 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031369 GO:0031503 GO:0031974 GO:0031981 GO:0031990 GO:0032268 GO:0032270 GO:0032774 GO:0032991 GO:0033036 GO:0033554 GO:0034062 GO:0034248 GO:0034250 GO:0034402 GO:0034605 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0035770 GO:0036464 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0045727 GO:0045948 GO:0046483 GO:0046700 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051246 GO:0051247 GO:0051641 GO:0051649 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576 GO:1902494 GO:1990234 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb4

Protein Analysis

138

Amino Acids

15.93

Weight (kDa)

5.44

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09920
fragaria_vesca	FvH4_1g22750
malus_domestica	MD06G1233600.v1.1 MD14G1240400.v1.1 MD15G1331500.v1.1
prunus_persica	Prupe.5G238000_v2.0.a1 Prupe.6G171500_v2.0.a1
pyrus_communis	pycom06g20820 pycom14g20190 pycom15g29350
rosa_chinensis	RchiOBHm_Chr2g0117051 RchiOBHm_Chr6g0293821 RchiOBHm_Chr7g0177821
rosa_laevigata	RLG00000005500 RLG00000011920 RLG00000018322
rosa_multiflora	Rmu_sc0002596.1_g000010 Rmu_sc0006214.1_g000009 Rmu_sc0009078.1_g000006 Rmu_ssc0000238.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126790 Rroxscaffold_3G00275520 Rroxscaffold_7G00173880
rosa_rugosa	Rorug02G0209800 Rorug06G0238200 Rorug06G0409600 Rorug06G0409700 Rorug06G0409800
rosa_samantha	Rh2AG265700 Rh2DG273000 Rh2DG292000 Rh6DG352400 Rh7AG009400 Rh7BG009500 Rh7CG009600 Rh7DG009500
rosa_wichuraiana	Rw0G019130 Rw2G020970 Rw6G030590 Rw7G000780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	319
AccI	GTMKAC	1 cut(s)	343
AciI	CCGC	1 cut(s)	193
AclWI	GGATC	1 cut(s)	122
AcsI	RAATTY	1 cut(s)	407
AcuI	CTGAAG	1 cut(s)	350
AfeI	AGCGCT	1 cut(s)	185
AflIII	ACRYGT	1 cut(s)	378
AgsI	TTSAA	4 cut(s)	8, 92, 113, 374
AhdI	GACNNNNNGTC	1 cut(s)	339
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	4 cut(s)	25, 109, 265, 308
AluI	AGCT	4 cut(s)	25, 109, 265, 308
Alw21I	GWGCWC	2 cut(s)	27, 267
Alw26I	GTCTC	1 cut(s)	381
AlwI	GGATC	1 cut(s)	122
Aor51HI	AGCGCT	1 cut(s)	185
ApeKI	GCWGC	2 cut(s)	17, 106
ApoI	RAATTY	1 cut(s)	407
AspLEI	GCGC	2 cut(s)	106, 186
BanI	GGYRCC	1 cut(s)	319
BanII	GRGCYC	2 cut(s)	27, 267
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	2 cut(s)	27, 267
BbvI	GCAGC	2 cut(s)	4, 118
BceAI	ACGGC	1 cut(s)	197
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	1 cut(s)	392
BcoDI	GTCTC	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	170
BfoI	RGCGCY	1 cut(s)	187
BisI	GCNGC	3 cut(s)	18, 107, 193
BlsI	GCNGC	3 cut(s)	19, 108, 194
Bme1390I	CCNGG	1 cut(s)	392
BmeRI	GACNNNNNGTC	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	1 cut(s)	392
BmsI	GCATC	3 cut(s)	199, 339, 355
BpiI	GAAGAC	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	135
BsaI	GGTCTC	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	392
BseGI	GGATG	2 cut(s)	43, 354
BseMII	CTCAG	1 cut(s)	246
BseXI	GCAGC	2 cut(s)	4, 118
BsgI	GTGCAG	1 cut(s)	271
BshNI	GGYRCC	1 cut(s)	319
BsiHKAI	GWGCWC	2 cut(s)	27, 267
BsmAI	GTCTC	1 cut(s)	381
Bso31I	GGTCTC	1 cut(s)	381
Bsp1286I	GDGCHC	2 cut(s)	27, 267
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	1 cut(s)	193
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	321
BspMAI	CTGCAG	1 cut(s)	174
BspPI	GGATC	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	319
BspTNI	GGTCTC	1 cut(s)	381
BssMI	GATC	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	1 cut(s)	298
BstAPI	GCANNNNNTGC	1 cut(s)	285
BstDEI	CTNAG	2 cut(s)	236, 255
BstF5I	GGATG	2 cut(s)	43, 354
BstH2I	RGCGCY	1 cut(s)	187
BstHHI	GCGC	2 cut(s)	106, 186
BstKTI	GATC	1 cut(s)	130
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 285
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	390
BstSFI	CTRYAG	1 cut(s)	170
BstV1I	GCAGC	2 cut(s)	4, 118
BstV2I	GAAGAC	1 cut(s)	338
BtsCI	GGATG	2 cut(s)	43, 354
BtsI	GCAGTG	1 cut(s)	167
BtsIMutI	CAGTG	2 cut(s)	167, 288
CfoI	GCGC	2 cut(s)	106, 186
CviAII	CATG	2 cut(s)	353, 379
CviJI	RGCY	6 cut(s)	25, 109, 192, 265, 308, 395
CviKI_1	RGCY	6 cut(s)	25, 109, 192, 265, 308, 395
DdeI	CTNAG	2 cut(s)	236, 255
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
DriI	GACNNNNNGTC	1 cut(s)	339
Eam1105I	GACNNNNNGTC	1 cut(s)	339
Ecl136II	GAGCTC	2 cut(s)	25, 265
Eco24I	GRGCYC	2 cut(s)	27, 267
Eco31I	GGTCTC	1 cut(s)	381
Eco47III	AGCGCT	1 cut(s)	185
Eco53kI	GAGCTC	2 cut(s)	25, 265
Eco57I	CTGAAG	1 cut(s)	350
EcoICRI	GAGCTC	2 cut(s)	25, 265
EcoRII	CCWGG	1 cut(s)	390
EcoT22I	ATGCAT	1 cut(s)	354
EcoT38I	GRGCYC	2 cut(s)	27, 267
FaeI	CATG	2 cut(s)	356, 382
FaiI	YATR	4 cut(s)	177, 317, 354, 380
FatI	CATG	2 cut(s)	352, 378
FblI	GTMKAC	1 cut(s)	343
Fnu4HI	GCNGC	3 cut(s)	18, 107, 193
FokI	GGATG	2 cut(s)	50, 361
FriOI	GRGCYC	2 cut(s)	27, 267
Fsp4HI	GCNGC	3 cut(s)	18, 107, 193
GlaI	GCGC	2 cut(s)	105, 185
GluI	GCNGC	3 cut(s)	18, 107, 193
HaeII	RGCGCY	1 cut(s)	187
HhaI	GCGC	2 cut(s)	106, 186
Hin1II	CATG	2 cut(s)	356, 382
Hin6I	GCGC	2 cut(s)	104, 184
HinP1I	GCGC	2 cut(s)	104, 184
HincII	GTYRAC	2 cut(s)	301, 344
HindII	GTYRAC	2 cut(s)	301, 344
HinfI	GANTC	2 cut(s)	85, 202
Hpy166II	GTNNAC	2 cut(s)	301, 344
Hpy188I	TCNGA	2 cut(s)	124, 330
Hpy188III	TCNNGA	4 cut(s)	89, 206, 403, 414
Hpy8I	GTNNAC	2 cut(s)	301, 344
Hpy99I	CGWCG	1 cut(s)	348
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4V	TGCA	4 cut(s)	172, 288, 352, 368
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 285
HpyF3I	CTNAG	2 cut(s)	236, 255
Hsp92II	CATG	2 cut(s)	356, 382
HspAI	GCGC	2 cut(s)	104, 184
Kzo9I	GATC	1 cut(s)	127
LpnPI	CCDG	4 cut(s)	82, 219, 377, 404
Lsp1109I	GCAGC	2 cut(s)	4, 118
LweI	GCATC	3 cut(s)	199, 339, 355
MaeIII	GTNAC	1 cut(s)	165
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	2 cut(s)	20, 343
MfeI	CAATTG	1 cut(s)	248
MhlI	GDGCHC	2 cut(s)	27, 267
MluCI	AATT	4 cut(s)	241, 248, 369, 407
Mph1103I	ATGCAT	1 cut(s)	354
MseI	TTAA	2 cut(s)	47, 383
MslI	CAYNNNNRTG	1 cut(s)	357
MspR9I	CCNGG	1 cut(s)	392
MunI	CAATTG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	392
MwoI	GCNNNNNNNGC	2 cut(s)	192, 285
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	2 cut(s)	356, 382
NlaIV	GGNNCC	1 cut(s)	321
NmeAIII	GCCGAG	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	165
NsiI	ATGCAT	1 cut(s)	354
NspI	RCATGY	1 cut(s)	382
PciI	ACATGT	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	85, 202
PkrI	GCNGC	3 cut(s)	19, 108, 194
PscI	ACATGT	1 cut(s)	378
Psp124BI	GAGCTC	2 cut(s)	27, 267
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	1 cut(s)	321
PstI	CTGCAG	1 cut(s)	174
RseI	CAYNNNNRTG	1 cut(s)	357
SacI	GAGCTC	2 cut(s)	27, 267
SalI	GTCGAC	1 cut(s)	342
SaqAI	TTAA	2 cut(s)	47, 383
SatI	GCNGC	3 cut(s)	18, 107, 193
Sau3AI	GATC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	392
SduI	GDGCHC	2 cut(s)	27, 267
SetI	ASST	7 cut(s)	27, 101, 111, 267, 310, 343, 393
SfaNI	GCATC	3 cut(s)	199, 339, 355
SfcI	CTRYAG	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
Sse9I	AATT	4 cut(s)	241, 248, 369, 407
SsiI	CCGC	1 cut(s)	193
SstI	GAGCTC	2 cut(s)	27, 267
StyD4I	CCNGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	298
TaqI	TCGA	1 cut(s)	343
TasI	AATT	4 cut(s)	241, 248, 369, 407
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	2 cut(s)	85, 202
Tru1I	TTAA	2 cut(s)	47, 383
Tru9I	TTAA	2 cut(s)	47, 383
TscAI	CASTG	2 cut(s)	174, 295
TseFI	GTSAC	1 cut(s)	165
TseI	GCWGC	2 cut(s)	17, 106
Tsp45I	GTSAC	1 cut(s)	165
TspDTI	ATGAA	1 cut(s)	80
TspGWI	ACGGA	1 cut(s)	361
TspRI	CASTG	2 cut(s)	174, 295
XapI	RAATTY	1 cut(s)	407
XceI	RCATGY	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	343
Zsp2I	ATGCAT	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.