Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002628

Physical Location & Seq

Genomic Coordinates Reverse (-)

55218334 .. 55222019

Gene Structure 3686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0409800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2298 bp

ATGGAGAGGTTTTCACAAAGAGAGAGCATTCTTTTAGGCTACAGTCCTCAAAATTCCTTCATCAACTCTGGTTCTTCGCCCCGCAGTCCCTACAAGAACTCAGATGTTGATTTCCATGATGTGTTTGGTGGCCCTCCAAGGCGATCATCGATTCAAGATATGAGGTACAGCTTCAACGATGTTACAGTTACCAGTGCACCCAAAGGGGATGGTGATGATGATGAGGAAGGTTGGTCTGAGAAGCCGGTGTTTGGGGGAGAGTCCCACAATAGAAGGCGGACTCACAGTGATGACTTCTTTGATGACATATTTAAAGCCAGCAATTCAGTGAGTTCTAGTCCGAGGAGGCTTCAACGGGACCCTTATTCTTCTTCTCCAGGTTCTCGGGTTCTAAGTCCGGCACGGCCCCTGCCGCCTAAACCGGAATCTTCTCTGGGTTCCTCACTGTCACCACAATTCAGCCTGCCTGCCAAATTGACCAAAGGGGTGGACTCTCCTCCAACAATTGGTGCCATTACTCGCACGACTTCTCTTTCTAGATTTTCAAGCCAAGCATTTCAAAGTTCTGAAAACTTGAAAAGTGACATTCGGTCATCACTTCGCATGAGCCATTTTTCCCAGGACTTTTCTGTTACCGGTGAAGGGTCCTCAAACTTGGCCAAGACTGACAAAGATGATACAGGAGGCAATTTGGAACAGGATTCTAAGAGTTCCCAAAGTCCAACAAGTAGCAATCTGTTTCAGTTTCATTTCTCAATATACAAGTGGGCTAGCAAGCCAATGGTGATGCCTCTTAGGGGAAGGAGTGGTTCAAGAGCGCAAGCGACTAAAAATGAGGAGCAATCAAGCACTTGTGAATACGCTGGTAACAAGAGTATTGGAAGGAAATCACCTATATCCACTCTGCCTGGTACTGATTTTACCTCCAATGATCACCCGCTGACAGATTCTATGTCGTCCAAGTTGGAAAGCAACAAACAAGAAAATGATTTGCTTCTTGATGAAAGCATTACCAACAAAGTAGAGGAACAGCCAAGTCGATTCATTGAGGAGACAATTCTTCCTGTAGTTGAATCTTTAGAAACTTTCCGCAGCCTTTGTAGTACTGTTGAAGATGTAGCTGGTGCCACTGTTTCATGCCAATGGCCGAAAAAAGATACCGATTCATGCCATTGGCCGATTAAAGACACCGATTCATGCCAGACAAGTGAAGATATAGAGCCTCGTCCTTTGCTTCAAACAGCTTGTGAAGATCCACAAGAAAAAGTTCATGTGCTTATGGAACAACTGCACAAGCCTGAGATAAAACCTACTCATTCTCTGTTTTTTGATAATGATCTTGGAGAAGGAACTAAGGAGATAACTAAATTGGCTGGTAAAAAGGAAAGCCTGGTCGAAGACACCAAAAAATCATCTGTAGATGTTGGTTCTAGTAGAAATGTGAAAAATCAGAATGGAAAAAGAAGTTCCTTGACTAATGTTCAAGTTGATAAAGCTGGTGTCCAAGGTTCACTTCGGAAATTGGGAGACAATCTTGGGAGAAACAAAGTCAAGGGAACAGTTAAGGATTTTGTTAAAATGTTCAACCAAGAAGCATTGTCAAAACCCAAAGATGATGATGACTTTGGAAGTCGGCGCTTTAAACGGAAGGAGAAAAATCCTATTGAATTGGTGAATGAAGCAAGTATAGGCACAACTATAATGCATAAGGAATTACAAAATTCCAATGTGAAGAAAACATTTCCAGATGCTTCTTCCATCAAGATAAAAGAAGATCTCAAACGTTCAGAGAAAGAAGCTTTTGAAGCAAAGACTGCTAGCTTTATCCGTAATAATGTTCCTAAGCAGTATGCCTCAGCTTCAAGTACTGGATCAGTTGCCAACTGCTCTAAGGCAAATACTGAAGATTTAGATGAGTCCTTCCGTGAAAACTTCCAGATCAAAGAATTAACTCAAGTTGAGAAGAAACCGCCAGTAGTTGGCAATAATCATGAAGAGTTGCAGGTTATTGATGCTAAAATCCGGCAGTGGTCAAAGGGAAAGGAAGGAAACATACGCTCACTGCTCACTACTATGCAACATATTGTTTGGCCTGAGAGCGGGTGGAAGACTGTACCTCTAGTTGATATAATTGAAGGTAATGCTGTGAAAAGATCATATCAAAGGGCTTTACTCTGTTTACACCCAGATAAACTACAACAGAAAGGAGCTACTTCACAACAGAAATACACTGCAGAAAAAGTCTTTGATATCTTGCAGGAGGCATGGAATCACTTCAACTCGCTTGGTCCACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb4

Protein Analysis

765

Amino Acids

85.1

Weight (kDa)

6.97

Isoelectric Point (pI)

60.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09920
fragaria_vesca	FvH4_1g22750
malus_domestica	MD06G1233600.v1.1 MD14G1240400.v1.1 MD15G1331500.v1.1
prunus_persica	Prupe.5G238000_v2.0.a1 Prupe.6G171500_v2.0.a1
pyrus_communis	pycom06g20820 pycom14g20190 pycom15g29350
rosa_chinensis	RchiOBHm_Chr2g0117051 RchiOBHm_Chr6g0293821 RchiOBHm_Chr7g0177821
rosa_laevigata	RLG00000005500 RLG00000011920 RLG00000018322
rosa_multiflora	Rmu_sc0002596.1_g000010 Rmu_sc0006214.1_g000009 Rmu_sc0009078.1_g000006 Rmu_ssc0000238.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126790 Rroxscaffold_3G00275520 Rroxscaffold_7G00173880
rosa_rugosa	Rorug02G0209800 Rorug06G0238200 Rorug06G0409600 Rorug06G0409700 Rorug06G0409800
rosa_samantha	Rh2AG265700 Rh2DG273000 Rh2DG292000 Rh6DG352400 Rh7AG009400 Rh7BG009500 Rh7CG009600 Rh7DG009500
rosa_wichuraiana	Rw0G019130 Rw2G020970 Rw6G030590 Rw7G000780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1993
AccB1I	GGYRCC	2 cut(s)	509, 1124
AccB7I	CCANNNNNTGG	2 cut(s)	506, 1979
AccBSI	CCGCTC	1 cut(s)	2100
AciI	CCGC	7 cut(s)	82, 277, 413, 938, 1090, 1970, 2100
AclI	AACGTT	1 cut(s)	1783
AclWI	GGATC	2 cut(s)	1247, 1879
AcoI	YGGCCR	3 cut(s)	657, 1145, 1175
AcsI	RAATTY	2 cut(s)	52, 1720
AcuI	CTGAAG	1 cut(s)	1923
AfaI	GTAC	5 cut(s)	167, 913, 1105, 1867, 2115
AfiI	CCNNNNNNNGG	6 cut(s)	251, 506, 642, 797, 1979, 2099
AgeI	ACCGGT	1 cut(s)	635
AhdI	GACNNNNNGTC	1 cut(s)	589
AjnI	CCWGG	4 cut(s)	376, 618, 907, 1389
AjuI	GAANNNNNNNTTGG	2 cut(s)	1497, 1529
AluBI	AGCT	8 cut(s)	171, 1121, 1244, 1496, 1799, 1821, 1859, 2210
AluI	AGCT	8 cut(s)	171, 1121, 1244, 1496, 1799, 1821, 1859, 2210
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	2 cut(s)	1046, 1521
Alw44I	GTGCAC	1 cut(s)	195
AlwI	GGATC	2 cut(s)	1247, 1879
Ama87I	CYCGRG	1 cut(s)	384
AoxI	GGCC	6 cut(s)	130, 404, 657, 1145, 1175, 2090
ApaLI	GTGCAC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	1092
ApoI	RAATTY	2 cut(s)	52, 1720
AsiGI	ACCGGT	1 cut(s)	635
Asp700I	GAANNNNTTC	2 cut(s)	1266, 2273
AspLEI	GCGC	2 cut(s)	820, 1638
AspS9I	GGNCC	5 cut(s)	131, 358, 405, 645, 2288
AsuHPI	GGTGA	7 cut(s)	224, 441, 650, 796, 882, 926, 1684
AsuNHI	GCTAGC	2 cut(s)	770, 1817
AvaI	CYCGRG	1 cut(s)	384
AvaII	GGWCC	3 cut(s)	358, 645, 2288
BaeGI	GKGCMC	1 cut(s)	199
BalI	TGGCCA	1 cut(s)	659
BanI	GGYRCC	2 cut(s)	509, 1124
BarI	GAAGNNNNNNTAC	2 cut(s)	2037, 2069
BbsI	GAAGAC	2 cut(s)	1404, 2114
Bbv12I	GWGCWC	1 cut(s)	199
BbvCI	CCTCAGC	1 cut(s)	1855
BbvI	GCAGC	1 cut(s)	1104
BccI	CCATC	2 cut(s)	203, 1766
BceAI	ACGGC	1 cut(s)	419
BciT130I	CCWGG	4 cut(s)	378, 620, 909, 1391
BclI	TGATCA	1 cut(s)	931
BcoDI	GTCTC	2 cut(s)	1046, 1521
BfaI	CTAG	6 cut(s)	336, 537, 771, 1431, 1818, 2120
BfmI	CTRYAG	4 cut(s)	40, 1065, 1416, 2232
BfoI	RGCGCY	1 cut(s)	1639
BfuAI	ACCTGC	1 cut(s)	1993
BglII	AGATCT	1 cut(s)	1774
BisI	GCNGC	2 cut(s)	413, 1093
BlsI	GCNGC	2 cut(s)	414, 1094
BmcAI	AGTACT	2 cut(s)	1105, 1867
Bme1390I	CCNGG	4 cut(s)	378, 620, 909, 1391
Bme18I	GGWCC	3 cut(s)	358, 645, 2288
BmeRI	GACNNNNNGTC	1 cut(s)	589
BmeT110I	CYCGRG	1 cut(s)	384
BmgT120I	GGNCC	5 cut(s)	131, 358, 405, 645, 2288
BmiI	GGNNCC	7 cut(s)	359, 360, 407, 439, 511, 646, 1126
BmrFI	CCNGG	4 cut(s)	378, 620, 909, 1391
BmsI	GCATC	3 cut(s)	777, 1738, 2002
BmtI	GCTAGC	2 cut(s)	774, 1821
BpiI	GAAGAC	2 cut(s)	1404, 2114
BpmI	CTGGAG	1 cut(s)	360
Bpu10I	CCTNAGC	2 cut(s)	1842, 1855
BpuEI	CTTGAG	1 cut(s)	1938
Bsa29I	ATCGAT	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	1335
BsaJI	CCNNGG	4 cut(s)	137, 341, 618, 1504
BsaWI	WCCGGW	2 cut(s)	421, 635
Bsc4I	CCNNNNNNNGG	6 cut(s)	251, 506, 642, 797, 1979, 2099
Bse118I	RCCGGY	2 cut(s)	244, 635
Bse1I	ACTGG	3 cut(s)	192, 1873, 1973
Bse8I	GATNNNNATC	1 cut(s)	1335
BseBI	CCWGG	4 cut(s)	378, 620, 909, 1391
BseCI	ATCGAT	1 cut(s)	149
BseDI	CCNNGG	4 cut(s)	137, 341, 618, 1504
BseGI	GGATG	1 cut(s)	214
BseJI	GATNNNNATC	1 cut(s)	1335
BseLI	CCNNNNNNNGG	6 cut(s)	251, 506, 642, 797, 1979, 2099
BseMII	CTCAG	5 cut(s)	114, 228, 1290, 1869, 2085
BseNI	ACTGG	3 cut(s)	192, 1873, 1973
BseRI	GAGGAG	4 cut(s)	358, 486, 851, 1064
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	1104
BsgI	GTGCAG	1 cut(s)	1274
BshFI	GGCC	6 cut(s)	132, 406, 659, 1147, 1177, 2092
BshNI	GGYRCC	2 cut(s)	509, 1124
BshTI	ACCGGT	1 cut(s)	635
BshVI	ATCGAT	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	199
BsiHKCI	CYCGRG	1 cut(s)	384
BsiSI	CCGG	5 cut(s)	245, 398, 422, 636, 2023
BslFI	GGGAC	3 cut(s)	72, 247, 371
BslI	CCNNNNNNNGG	6 cut(s)	251, 506, 642, 797, 1979, 2099
BsmAI	GTCTC	2 cut(s)	1046, 1521
BsmFI	GGGAC	3 cut(s)	72, 247, 371
BsmI	GAATGC	1 cut(s)	27
BsnI	GGCC	6 cut(s)	132, 406, 659, 1147, 1177, 2092
BsoBI	CYCGRG	1 cut(s)	384
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	8 cut(s)	143, 931, 1252, 1336, 1774, 1871, 1938, 2153
BspACI	CCGC	7 cut(s)	82, 277, 413, 938, 1090, 1970, 2100
BspANI	GGCC	6 cut(s)	132, 406, 659, 1147, 1177, 2092
BspCNI	CTCAG	5 cut(s)	113, 229, 1291, 1868, 2086
BspDI	ATCGAT	1 cut(s)	149
BspHI	TCATGA	1 cut(s)	1990
BspLI	GGNNCC	7 cut(s)	359, 360, 407, 439, 511, 646, 1126
BspMAI	CTGCAG	1 cut(s)	2236
BspMI	ACCTGC	1 cut(s)	1993
BspOI	GCTAGC	2 cut(s)	774, 1821
BspPI	GGATC	2 cut(s)	1247, 1879
BspT107I	GGYRCC	2 cut(s)	509, 1124
BsrBI	CCGCTC	1 cut(s)	2100
BsrFI	RCCGGY	2 cut(s)	244, 635
BsrI	ACTGG	3 cut(s)	192, 1873, 1973
BssAI	RCCGGY	2 cut(s)	244, 635
BssECI	CCNNGG	4 cut(s)	137, 341, 618, 1504
BssMI	GATC	8 cut(s)	143, 931, 1252, 1336, 1774, 1871, 1938, 2153
BssT1I	CCWWGG	2 cut(s)	137, 1504
Bst2UI	CCWGG	4 cut(s)	378, 620, 909, 1391
Bst4CI	ACNGT	8 cut(s)	44, 187, 287, 447, 1108, 1132, 1561, 2113
Bst6I	CTCTTC	1 cut(s)	1989
BstAPI	GCANNNNNTGC	1 cut(s)	1814
BstC8I	GCNNGC	7 cut(s)	319, 464, 468, 772, 776, 822, 1819
BstF5I	GGATG	1 cut(s)	214
BstH2I	RGCGCY	1 cut(s)	1639
BstHHI	GCGC	2 cut(s)	820, 1638
BstKTI	GATC	8 cut(s)	146, 934, 1255, 1339, 1777, 1874, 1941, 2156
BstMAI	GTCTC	2 cut(s)	1046, 1521
BstMBI	GATC	8 cut(s)	143, 931, 1252, 1336, 1774, 1871, 1938, 2153
BstMWI	GCNNNNNNNGC	3 cut(s)	412, 1805, 1814
BstNI	CCWGG	4 cut(s)	378, 620, 909, 1391
BstSCI	CCNGG	4 cut(s)	376, 618, 907, 1389
BstSFI	CTRYAG	4 cut(s)	40, 1065, 1416, 2232
BstSLI	GKGCMC	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	1104
BstV2I	GAAGAC	2 cut(s)	1404, 2114
BstX2I	RGATCY	2 cut(s)	1252, 1774
BstXI	CCANNNNNNTGG	1 cut(s)	487
BstYI	RGATCY	2 cut(s)	1252, 1774
Bsu15I	ATCGAT	1 cut(s)	149
BsuRI	GGCC	6 cut(s)	132, 406, 659, 1147, 1177, 2092
BsuTUI	ATCGAT	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	3 cut(s)	2033, 2060, 2229
BtsIMutI	CAGTG	8 cut(s)	199, 292, 333, 443, 1128, 2033, 2060, 2229
BveI	ACCTGC	1 cut(s)	1993
Cac8I	GCNNGC	7 cut(s)	319, 464, 468, 772, 776, 822, 1819
CciI	TCATGA	1 cut(s)	1990
CfoI	GCGC	2 cut(s)	820, 1638
Cfr10I	RCCGGY	2 cut(s)	244, 635
Cfr13I	GGNCC	5 cut(s)	131, 358, 405, 645, 2288
ClaI	ATCGAT	1 cut(s)	149
Csp6I	GTAC	5 cut(s)	166, 912, 1104, 1866, 2114
CspAI	ACCGGT	1 cut(s)	635
CviAII	CATG	8 cut(s)	116, 604, 1137, 1167, 1197, 1271, 1991, 2265
CviQI	GTAC	5 cut(s)	166, 912, 1104, 1866, 2114
DpnI	GATC	8 cut(s)	145, 933, 1254, 1338, 1776, 1873, 1940, 2155
DpnII	GATC	8 cut(s)	143, 931, 1252, 1336, 1774, 1871, 1938, 2153
DraI	TTTAAA	2 cut(s)	313, 1642
DriI	GACNNNNNGTC	1 cut(s)	589
EaeI	YGGCCR	3 cut(s)	657, 1145, 1175
Eam1104I	CTCTTC	1 cut(s)	1989
Eam1105I	GACNNNNNGTC	1 cut(s)	589
EarI	CTCTTC	1 cut(s)	1989
EciI	GGCGGA	1 cut(s)	292
Eco130I	CCWWGG	2 cut(s)	137, 1504
Eco32I	GATATC	1 cut(s)	2251
Eco47I	GGWCC	3 cut(s)	358, 645, 2288
Eco57I	CTGAAG	1 cut(s)	1923
Eco88I	CYCGRG	1 cut(s)	384
EcoO109I	RGGNCCY	2 cut(s)	358, 645
EcoRII	CCWGG	4 cut(s)	376, 618, 907, 1389
EcoRV	GATATC	1 cut(s)	2251
EcoT14I	CCWWGG	2 cut(s)	137, 1504
EcoT22I	ATGCAT	1 cut(s)	1707
ErhI	CCWWGG	2 cut(s)	137, 1504
FaeI	CATG	8 cut(s)	119, 607, 1140, 1170, 1200, 1274, 1994, 2268
FalI	AAGNNNNNCTT	2 cut(s)	1497, 1529
FaqI	GGGAC	3 cut(s)	72, 247, 371
FatI	CATG	8 cut(s)	115, 603, 1136, 1166, 1196, 1270, 1990, 2264
FauI	CCCGC	3 cut(s)	89, 945, 2093
FbaI	TGATCA	1 cut(s)	931
Fnu4HI	GCNGC	2 cut(s)	413, 1093
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	2 cut(s)	413, 1093
FspBI	CTAG	6 cut(s)	336, 537, 771, 1431, 1818, 2120
GlaI	GCGC	2 cut(s)	819, 1637
GluI	GCNGC	2 cut(s)	413, 1093
GsuI	CTGGAG	1 cut(s)	360
HaeII	RGCGCY	1 cut(s)	1639
HaeIII	GGCC	6 cut(s)	132, 406, 659, 1147, 1177, 2092
HapII	CCGG	5 cut(s)	245, 398, 422, 636, 2023
HhaI	GCGC	2 cut(s)	820, 1638
Hin1II	CATG	8 cut(s)	119, 607, 1140, 1170, 1200, 1274, 1994, 2268
Hin6I	GCGC	2 cut(s)	818, 1636
HinP1I	GCGC	2 cut(s)	818, 1636
HindIII	AAGCTT	1 cut(s)	1797
HpaII	CCGG	5 cut(s)	245, 398, 422, 636, 2023
HphI	GGTGA	7 cut(s)	224, 441, 650, 796, 882, 926, 1684
Hpy166II	GTNNAC	5 cut(s)	197, 490, 1511, 2180, 2291
Hpy188I	TCNGA	7 cut(s)	103, 238, 342, 568, 1452, 1518, 1789
Hpy188III	TCNNGA	8 cut(s)	155, 537, 813, 998, 1745, 1762, 1936, 1991
Hpy8I	GTNNAC	5 cut(s)	197, 490, 1511, 2180, 2291
HpyCH4III	ACNGT	8 cut(s)	44, 187, 287, 447, 1108, 1132, 1561, 2113
HpyCH4IV	ACGT	1 cut(s)	1783
HpyCH4V	TGCA	7 cut(s)	197, 1291, 1705, 2002, 2077, 2234, 2257
HpyF10VI	GCNNNNNNNGC	3 cut(s)	412, 1805, 1814
HpySE526I	ACGT	1 cut(s)	1783
Hsp92II	CATG	8 cut(s)	119, 607, 1140, 1170, 1200, 1274, 1994, 2268
HspAI	GCGC	2 cut(s)	818, 1636
KflI	GGGWCCC	1 cut(s)	358
Ksp22I	TGATCA	1 cut(s)	931
Kzo9I	GATC	8 cut(s)	143, 931, 1252, 1336, 1774, 1871, 1938, 2153
LmnI	GCTCC	2 cut(s)	838, 2207
Lsp1109I	GCAGC	1 cut(s)	1104
LweI	GCATC	3 cut(s)	777, 1738, 2002
MaeI	CTAG	6 cut(s)	336, 537, 771, 1431, 1818, 2120
MaeII	ACGT	1 cut(s)	1783
MaeIII	GTNAC	6 cut(s)	181, 187, 447, 581, 631, 866
MalI	GATC	8 cut(s)	145, 933, 1254, 1338, 1776, 1873, 1940, 2155
MbiI	CCGCTC	1 cut(s)	2100
MboI	GATC	8 cut(s)	143, 931, 1252, 1336, 1774, 1871, 1938, 2153
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	2 cut(s)	1252, 1774
MhlI	GDGCHC	1 cut(s)	199
MlsI	TGGCCA	1 cut(s)	659
MluNI	TGGCCA	1 cut(s)	659
MlyI	GAGTC	4 cut(s)	269, 274, 485, 1925
MmeI	TCCRAC	3 cut(s)	524, 746, 945
Mox20I	TGGCCA	1 cut(s)	659
Mph1103I	ATGCAT	1 cut(s)	1707
MroXI	GAANNNNTTC	2 cut(s)	1266, 2273
MscI	TGGCCA	1 cut(s)	659
MseI	TTAA	6 cut(s)	312, 1182, 1563, 1575, 1641, 1949
MslI	CAYNNNNRTG	3 cut(s)	288, 1141, 2072
Msp20I	TGGCCA	1 cut(s)	659
MspA1I	CMGCKG	1 cut(s)	940
MspI	CCGG	5 cut(s)	245, 398, 422, 636, 2023
MspR9I	CCNGG	4 cut(s)	378, 620, 909, 1391
MunI	CAATTG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	27
MvaI	CCWGG	4 cut(s)	378, 620, 909, 1391
MwoI	GCNNNNNNNGC	3 cut(s)	412, 1805, 1814
NdeII	GATC	8 cut(s)	143, 931, 1252, 1336, 1774, 1871, 1938, 2153
NheI	GCTAGC	2 cut(s)	770, 1817
NlaIII	CATG	8 cut(s)	119, 607, 1140, 1170, 1200, 1274, 1994, 2268
NlaIV	GGNNCC	7 cut(s)	359, 360, 407, 439, 511, 646, 1126
NmuCI	GTSAC	2 cut(s)	447, 581
NsiI	ATGCAT	1 cut(s)	1707
PagI	TCATGA	1 cut(s)	1990
PctI	GAATGC	1 cut(s)	27
PdmI	GAANNNNTTC	2 cut(s)	1266, 2273
PfeI	GAWTC	9 cut(s)	151, 425, 701, 947, 1041, 1073, 1163, 1193, 2269
PflMI	CCANNNNNTGG	2 cut(s)	506, 1979
PinAI	ACCGGT	1 cut(s)	635
PkrI	GCNGC	2 cut(s)	414, 1094
PleI	GAGTC	4 cut(s)	268, 274, 485, 1924
PpsI	GAGTC	4 cut(s)	268, 274, 485, 1924
PpuMI	RGGWCCY	2 cut(s)	358, 645
Psp1406I	AACGTT	1 cut(s)	1783
Psp5II	RGGWCCY	2 cut(s)	358, 645
Psp6I	CCWGG	4 cut(s)	376, 618, 907, 1389
PspGI	CCWGG	4 cut(s)	376, 618, 907, 1389
PspN4I	GGNNCC	7 cut(s)	359, 360, 407, 439, 511, 646, 1126
PspPI	GGNCC	5 cut(s)	131, 358, 405, 645, 2288
PspPPI	RGGWCCY	2 cut(s)	358, 645
PstI	CTGCAG	1 cut(s)	2236
PsuI	RGATCY	2 cut(s)	1252, 1774
RsaI	GTAC	5 cut(s)	167, 913, 1105, 1867, 2115
RsaNI	GTAC	5 cut(s)	166, 912, 1104, 1866, 2114
RseI	CAYNNNNRTG	3 cut(s)	288, 1141, 2072
SaqAI	TTAA	6 cut(s)	312, 1182, 1563, 1575, 1641, 1949
SatI	GCNGC	2 cut(s)	413, 1093
Sau3AI	GATC	8 cut(s)	143, 931, 1252, 1336, 1774, 1871, 1938, 2153
Sau96I	GGNCC	5 cut(s)	131, 358, 405, 645, 2288
ScaI	AGTACT	2 cut(s)	1105, 1867
SchI	GAGTC	4 cut(s)	269, 274, 485, 1925
ScrFI	CCNGG	4 cut(s)	378, 620, 909, 1391
SduI	GDGCHC	1 cut(s)	199
SfaNI	GCATC	3 cut(s)	777, 1738, 2002
SfcI	CTRYAG	4 cut(s)	40, 1065, 1416, 2232
SinI	GGWCC	3 cut(s)	358, 645, 2288
SmiMI	CAYNNNNRTG	3 cut(s)	288, 1141, 2072
SmlI	CTYRAG	1 cut(s)	1953
SmoI	CTYRAG	1 cut(s)	1953
SsiI	CCGC	7 cut(s)	82, 277, 413, 938, 1090, 1970, 2100
SspMI	CTAG	6 cut(s)	336, 537, 771, 1431, 1818, 2120
StyD4I	CCNGG	4 cut(s)	376, 618, 907, 1389
StyI	CCWWGG	2 cut(s)	137, 1504
TaaI	ACNGT	8 cut(s)	44, 187, 287, 447, 1108, 1132, 1561, 2113
TaiI	ACGT	1 cut(s)	1786
TaqI	TCGA	3 cut(s)	149, 1039, 1395
TaqII	GACCGA	1 cut(s)	579
TatI	WGTACW	2 cut(s)	1103, 1865
TauI	GCSGC	1 cut(s)	415
TfiI	GAWTC	9 cut(s)	151, 425, 701, 947, 1041, 1073, 1163, 1193, 2269
Tru1I	TTAA	6 cut(s)	312, 1182, 1563, 1575, 1641, 1949
Tru9I	TTAA	6 cut(s)	312, 1182, 1563, 1575, 1641, 1949
TscAI	CASTG	8 cut(s)	199, 292, 333, 450, 1135, 2033, 2067, 2236
TseFI	GTSAC	2 cut(s)	447, 581
TseI	GCWGC	1 cut(s)	1092
Tsp45I	GTSAC	2 cut(s)	447, 581
TspGWI	ACGGA	3 cut(s)	1660, 1817, 1913
TspRI	CASTG	8 cut(s)	199, 292, 333, 450, 1135, 2033, 2067, 2236
Van91I	CCANNNNNTGG	2 cut(s)	506, 1979
VneI	GTGCAC	1 cut(s)	195
VpaK11BI	GGWCC	3 cut(s)	358, 645, 2288
XapI	RAATTY	2 cut(s)	52, 1720
XbaI	TCTAGA	1 cut(s)	536
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XmnI	GAANNNNTTC	2 cut(s)	1266, 2273
XspI	CTAG	6 cut(s)	336, 537, 771, 1431, 1818, 2120
ZrmI	AGTACT	2 cut(s)	1105, 1867
Zsp2I	ATGCAT	1 cut(s)	1707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.