Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015248

Physical Location & Seq

Genomic Coordinates Reverse (-)

2089883 .. 2092148

Gene Structure 2266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G026500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGTGGCGAGTTACGATACGAGATCGCACAGAATGCCTACATAAAGCTGGTGCTGCACGCTCTCAAGCACAAGAGCTCCGCCGTCAACGCCGTCCTCCTCGGCCGCGTCTCCTCCCAAAACGACGCCGTCGAGATAACGGACTCCGTCCCTCTCTTCCACTCCCAAATCGGCCTCCTTCCCCAGCTCGAGATCTCCCTCATCCTGATAGAGGAGCACTATGCTGCTAAAGGAGTGAGCATTGTGGGCTATTTTCATGCCAACGAAAGGTTTGACGATCACGAGCTCGGCGGCATTGCCAAGAACATCGGAGATCACATCTATCGCTACCTTCCTCAAGCGGCAATTCTTTTGTTAGACAACAGGAAGCTTGAAGCTTTGACAAGAACTAAGGACCGGAGCCCCGTAATGCAGCTTTACACGAAGGATGCATCTAGGATTTGGAAGTTAATCGGCTCTGATGGAAATCAGTTAACCATCAAGGAGCCATCAGCAAATGTTGTTCTACTGGATTATGTCTCCACTGAAAAATGGCAGGATGTTGTAGATTTTGATGATCACCTTGATGACATTAGCAAGGATTGGCTGAACCCAGAACTGTTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0072546 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0172

Protein Analysis

203

Amino Acids

22.81

Weight (kDa)

5.44

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55940
fragaria_vesca	FvH4_3g42640
malus_domestica	MD03G1030300.v1.1 MD11G1035300.v1.1
prunus_persica	Prupe.6G026500_v2.0.a1
pyrus_communis	pycom11g02930
rosa_chinensis	RchiOBHm_Chr5g0076271 RchiOBHm_Chr5g0076591
rosa_laevigata	RLG00000036612
rosa_multiflora	Rmu_sc0005961.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005590
rosa_rugosa	Rorug05G0446500
rosa_samantha	Rh5AG501700 Rh5BG523500 Rh5CG547200
rosa_wichuraiana	Rw0G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	108
AciI	CCGC	4 cut(s)	81, 106, 291, 341
AcoI	YGGCCR	1 cut(s)	103
AcyI	GRCGYC	1 cut(s)	126
AfiI	CCNNNNNNNGG	2 cut(s)	211, 267
AgsI	TTSAA	2 cut(s)	374, 604
AluBI	AGCT	7 cut(s)	49, 78, 187, 286, 370, 377, 415
AluI	AGCT	7 cut(s)	49, 78, 187, 286, 370, 377, 415
Alw21I	GWGCWC	3 cut(s)	80, 219, 288
Alw26I	GTCTC	2 cut(s)	115, 523
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	2 cut(s)	103, 172
ApeKI	GCWGC	3 cut(s)	55, 224, 412
AspS9I	GGNCC	1 cut(s)	394
AsuHPI	GGTGA	1 cut(s)	551
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	394
BanII	GRGCYC	3 cut(s)	80, 288, 404
BauI	CACGAG	1 cut(s)	281
Bbv12I	GWGCWC	3 cut(s)	80, 219, 288
BbvI	GCAGC	3 cut(s)	42, 211, 424
BccI	CCATC	3 cut(s)	455, 485, 496
BceAI	ACGGC	3 cut(s)	68, 77, 113
BclI	TGATCA	1 cut(s)	556
BcoDI	GTCTC	2 cut(s)	115, 523
BfaI	CTAG	1 cut(s)	435
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	6 cut(s)	56, 106, 225, 292, 342, 413
BlsI	GCNGC	6 cut(s)	57, 107, 226, 293, 343, 414
Bme18I	GGWCC	1 cut(s)	394
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	2 cut(s)	401, 486
BmsI	GCATC	2 cut(s)	418, 440
BpuEI	CTTGAG	2 cut(s)	50, 321
BsaBI	GATNNNNATC	1 cut(s)	465
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	100
BsaWI	WCCGGW	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 267
Bse1I	ACTGG	1 cut(s)	513
Bse3DI	GCAATG	1 cut(s)	294
Bse8I	GATNNNNATC	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	3 cut(s)	201, 433, 544
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	2 cut(s)	211, 267
BseMI	GCAATG	1 cut(s)	294
BseNI	ACTGG	1 cut(s)	513
BseRI	GAGGAG	3 cut(s)	89, 103, 227
BseX3I	CGGCCG	1 cut(s)	103
BseXI	GCAGC	3 cut(s)	42, 211, 424
BseYI	CCCAGC	1 cut(s)	183
BsgI	GTGCAG	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	108
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	2 cut(s)	105, 174
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	3 cut(s)	80, 219, 288
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	397
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	211, 267
BsmAI	GTCTC	2 cut(s)	115, 523
BsmBI	CGTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	40
BsnI	GGCC	2 cut(s)	105, 174
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	4 cut(s)	80, 219, 288, 404
Bsp143I	GATC	5 cut(s)	24, 192, 277, 313, 556
BspACI	CCGC	4 cut(s)	81, 106, 291, 341
BspANI	GGCC	2 cut(s)	105, 174
BspFNI	CGCG	1 cut(s)	108
BspLI	GGNNCC	2 cut(s)	401, 486
BsrDI	GCAATG	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	513
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	5 cut(s)	24, 192, 277, 313, 556
BssNI	GRCGYC	1 cut(s)	126
BssSI	CACGAG	1 cut(s)	281
Bst2BI	CACGAG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	600
Bst6I	CTCTTC	1 cut(s)	161
BstACI	GRCGYC	1 cut(s)	126
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	390
BstENI	CCTNNNNNAGG	1 cut(s)	209
BstF5I	GGATG	3 cut(s)	201, 433, 544
BstFNI	CGCG	1 cut(s)	108
BstKTI	GATC	5 cut(s)	27, 195, 280, 316, 559
BstMAI	GTCTC	2 cut(s)	115, 523
BstMBI	GATC	5 cut(s)	24, 192, 277, 313, 556
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 55, 89, 246
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	3 cut(s)	42, 211, 424
BstX2I	RGATCY	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	192
BstZI	CGGCCG	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	105, 174
BtsCI	GGATG	3 cut(s)	201, 433, 544
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	394
CseI	GACGC	2 cut(s)	97, 134
CviAII	CATG	1 cut(s)	257
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	5 cut(s)	26, 194, 279, 315, 558
DpnII	GATC	5 cut(s)	24, 192, 277, 313, 556
EaeI	YGGCCR	1 cut(s)	103
EagI	CGGCCG	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
EciI	GGCGGA	1 cut(s)	70
Ecl136II	GAGCTC	2 cut(s)	78, 286
EclXI	CGGCCG	1 cut(s)	103
Eco24I	GRGCYC	3 cut(s)	80, 288, 404
Eco47I	GGWCC	1 cut(s)	394
Eco52I	CGGCCG	1 cut(s)	103
Eco53kI	GAGCTC	2 cut(s)	78, 286
Eco88I	CYCGRG	1 cut(s)	188
EcoICRI	GAGCTC	2 cut(s)	78, 286
EcoNI	CCTNNNNNAGG	1 cut(s)	209
EcoT22I	ATGCAT	1 cut(s)	433
EcoT38I	GRGCYC	3 cut(s)	80, 288, 404
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	1 cut(s)	260
FaiI	YATR	4 cut(s)	44, 222, 258, 516
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	1 cut(s)	256
FbaI	TGATCA	1 cut(s)	556
Fnu4HI	GCNGC	6 cut(s)	56, 106, 225, 292, 342, 413
FokI	GGATG	3 cut(s)	188, 440, 551
FriOI	GRGCYC	3 cut(s)	80, 288, 404
Fsp4HI	GCNGC	6 cut(s)	56, 106, 225, 292, 342, 413
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	6 cut(s)	56, 106, 225, 292, 342, 413
GsaI	CCCAGC	1 cut(s)	187
HaeIII	GGCC	2 cut(s)	105, 174
HapII	CCGG	1 cut(s)	397
HgaI	GACGC	2 cut(s)	97, 134
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	260
HincII	GTYRAC	2 cut(s)	88, 474
HindII	GTYRAC	2 cut(s)	88, 474
HindIII	AAGCTT	2 cut(s)	368, 375
HinfI	GANTC	1 cut(s)	143
HpaI	GTTAAC	1 cut(s)	474
HpaII	CCGG	1 cut(s)	397
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	2 cut(s)	88, 474
Hpy188I	TCNGA	2 cut(s)	311, 460
Hpy188III	TCNNGA	4 cut(s)	133, 190, 205, 281
Hpy8I	GTNNAC	2 cut(s)	88, 474
Hpy99I	CGWCG	2 cut(s)	128, 134
HpyAV	CCTTC	3 cut(s)	188, 341, 418
HpyCH4III	ACNGT	1 cut(s)	600
HpyCH4V	TGCA	3 cut(s)	58, 412, 431
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 55, 89, 246
HpyF3I	CTNAG	1 cut(s)	390
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	260
Ksp22I	TGATCA	1 cut(s)	556
KspAI	GTTAAC	1 cut(s)	474
Kzo9I	GATC	5 cut(s)	24, 192, 277, 313, 556
LmnI	GCTCC	4 cut(s)	83, 214, 399, 484
LpnPI	CCDG	7 cut(s)	35, 197, 218, 349, 410, 494, 521
Lsp1109I	GCAGC	3 cut(s)	42, 211, 424
LweI	GCATC	2 cut(s)	418, 440
MaeI	CTAG	1 cut(s)	435
MaeIII	GTNAC	1 cut(s)	12
MalI	GATC	5 cut(s)	26, 194, 279, 315, 558
MboI	GATC	5 cut(s)	24, 192, 277, 313, 556
MboII	GAAGA	1 cut(s)	148
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	4 cut(s)	80, 219, 288, 404
MluCI	AATT	1 cut(s)	345
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	8 cut(s)	107, 110, 124, 162, 185, 205, 209, 345
Mph1103I	ATGCAT	1 cut(s)	433
MseI	TTAA	2 cut(s)	449, 473
MslI	CAYNNNNRTG	1 cut(s)	564
MspI	CCGG	1 cut(s)	397
Mva1269I	GAATGC	1 cut(s)	40
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	4 cut(s)	35, 55, 89, 246
NdeII	GATC	5 cut(s)	24, 192, 277, 313, 556
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	2 cut(s)	401, 486
NmeAIII	GCCGAG	2 cut(s)	81, 267
NsiI	ATGCAT	1 cut(s)	433
PaeR7I	CTCGAG	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	1 cut(s)	40
PflFI	GACNNNGTC	2 cut(s)	128, 146
PkrI	GCNGC	6 cut(s)	57, 107, 226, 293, 343, 414
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp124BI	GAGCTC	2 cut(s)	80, 288
PspFI	CCCAGC	1 cut(s)	183
PspN4I	GGNNCC	2 cut(s)	401, 486
PspPI	GGNCC	1 cut(s)	394
PsuI	RGATCY	1 cut(s)	192
PsyI	GACNNNGTC	2 cut(s)	128, 146
RseI	CAYNNNNRTG	1 cut(s)	564
SacI	GAGCTC	2 cut(s)	80, 288
SaqAI	TTAA	2 cut(s)	449, 473
SatI	GCNGC	6 cut(s)	56, 106, 225, 292, 342, 413
Sau3AI	GATC	5 cut(s)	24, 192, 277, 313, 556
Sau96I	GGNCC	1 cut(s)	394
SchI	GAGTC	1 cut(s)	137
SduI	GDGCHC	4 cut(s)	80, 219, 288, 404
SfaNI	GCATC	2 cut(s)	418, 440
Sfr274I	CTCGAG	1 cut(s)	188
SinI	GGWCC	1 cut(s)	394
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	564
SmlI	CTYRAG	3 cut(s)	65, 188, 336
SmoI	CTYRAG	3 cut(s)	65, 188, 336
Sse9I	AATT	1 cut(s)	345
SsiI	CCGC	4 cut(s)	81, 106, 291, 341
SspMI	CTAG	1 cut(s)	435
SstI	GAGCTC	2 cut(s)	80, 288
TaaI	ACNGT	1 cut(s)	600
TaqI	TCGA	2 cut(s)	132, 189
TasI	AATT	1 cut(s)	345
TauI	GCSGC	3 cut(s)	108, 294, 344
Tru1I	TTAA	2 cut(s)	449, 473
Tru9I	TTAA	2 cut(s)	449, 473
TscAI	CASTG	1 cut(s)	529
TseI	GCWGC	3 cut(s)	55, 224, 412
TspDTI	ATGAA	1 cut(s)	245
TspGWI	ACGGA	2 cut(s)	136, 155
TspRI	CASTG	1 cut(s)	529
Tth111I	GACNNNGTC	2 cut(s)	128, 146
VpaK11BI	GGWCC	1 cut(s)	394
XagI	CCTNNNNNAGG	1 cut(s)	209
XhoI	CTCGAG	1 cut(s)	188
XspI	CTAG	1 cut(s)	435
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.