Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005961.1

Orthogroup ID

OG0015248

Physical Location & Seq

Genomic Coordinates Reverse (-)

34589 .. 38397

Gene Structure 3809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005961.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgggcggcgagttacgctacgagatcgcgcagaacgcgtacataaagcttgtgctacacgcgctcaagcacaagacctccgccgtgaacggcatcctcgtcggccgcgtctcccccaaaaacgacgtcgtcgagatcaccgactccgtccctctcttccactcccagctcggcctcctcccccagctcgagatctccctcatcctcattgaggagcattttgttactaaaggactgagcattgtgggatattttcacgcaaacgagaggtttgatgatcatgagcttggaagcctcgccaagaacgttggtgatcacatttatcgttaccttcctcaagctgcagtgctcttgttagataacaagaagcttggagctttatcaaagaccaaggaccggagccctgtggtccagctttacacaaaagatgcatcgaggatttggaagctagttggatcagatggaaatcagttaacaatcaaggagccctcagcaaatgttgttctactggatcacatctcaactgaaaaatggcaggatgttgtagattttgatgatcaccttgatgacattagcaaggattggctgaacccagagctcttcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0072546 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0172

Protein Analysis

202

Amino Acids

22.7

Weight (kDa)

5.82

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55940
fragaria_vesca	FvH4_3g42640
malus_domestica	MD03G1030300.v1.1 MD11G1035300.v1.1
prunus_persica	Prupe.6G026500_v2.0.a1
pyrus_communis	pycom11g02930
rosa_chinensis	RchiOBHm_Chr5g0076271 RchiOBHm_Chr5g0076591
rosa_laevigata	RLG00000036612
rosa_multiflora	Rmu_sc0005961.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005590
rosa_rugosa	Rorug05G0446500
rosa_samantha	Rh5AG501700 Rh5BG523500 Rh5CG547200
rosa_wichuraiana	Rw0G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
AccII	CGCG	4 cut(s)	29, 38, 62, 108
AciI	CCGC	3 cut(s)	6, 81, 106
AclI	AACGTT	1 cut(s)	306
AclWI	GGATC	2 cut(s)	463, 519
AcoI	YGGCCR	1 cut(s)	103
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	211, 396
AflIII	ACRYGT	1 cut(s)	36
AgsI	TTSAA	1 cut(s)	604
Alw21I	GWGCWC	2 cut(s)	351, 600
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	2 cut(s)	463, 519
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	2 cut(s)	103, 172
ApeKI	GCWGC	1 cut(s)	341
ArsI	GACNNNNNNTTYG	2 cut(s)	111, 143
AspLEI	GCGC	2 cut(s)	31, 64
AspS9I	GGNCC	2 cut(s)	394, 409
AsuHPI	GGTGA	3 cut(s)	130, 323, 551
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	394, 409
BanII	GRGCYC	3 cut(s)	404, 489, 600
Bbv12I	GWGCWC	2 cut(s)	351, 600
BbvCI	CCTCAGC	1 cut(s)	490
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	1 cut(s)	455
BceAI	ACGGC	2 cut(s)	68, 106
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BclI	TGATCA	3 cut(s)	277, 313, 556
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	1 cut(s)	449
BfmI	CTRYAG	1 cut(s)	342
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	3 cut(s)	7, 106, 342
BlsI	GCNGC	3 cut(s)	8, 107, 343
Bme18I	GGWCC	2 cut(s)	394, 409
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	394, 409
BmiI	GGNNCC	2 cut(s)	401, 486
BmsI	GCATC	3 cut(s)	102, 418, 440
Bpu10I	CCTNAGC	1 cut(s)	490
BpuEI	CTTGAG	2 cut(s)	50, 321
BsaBI	GATNNNNATC	1 cut(s)	465
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	390
BsaWI	WCCGGW	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 396
Bse1I	ACTGG	1 cut(s)	513
Bse8I	GATNNNNATC	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	3 cut(s)	93, 201, 544
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	2 cut(s)	211, 396
BseMII	CTCAG	2 cut(s)	227, 504
BseNI	ACTGG	1 cut(s)	513
BseRI	GAGGAG	2 cut(s)	167, 227
BseX3I	CGGCCG	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	328
BseYI	CCCAGC	2 cut(s)	165, 183
Bsh1236I	CGCG	4 cut(s)	29, 38, 62, 108
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	2 cut(s)	105, 174
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	2 cut(s)	351, 600
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	397
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	211, 396
BsmAI	GTCTC	1 cut(s)	115
BsmBI	CGTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	2 cut(s)	105, 174
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	4 cut(s)	351, 404, 489, 600
Bsp143I	GATC	8 cut(s)	24, 135, 192, 277, 313, 455, 511, 556
BspACI	CCGC	3 cut(s)	6, 81, 106
BspANI	GGCC	2 cut(s)	105, 174
BspCNI	CTCAG	2 cut(s)	228, 503
BspFNI	CGCG	4 cut(s)	29, 38, 62, 108
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	401, 486
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	2 cut(s)	463, 519
BspQI	GCTCTTC	1 cut(s)	605
BsrI	ACTGG	1 cut(s)	513
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	8 cut(s)	24, 135, 192, 277, 313, 455, 511, 556
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	390
Bst6I	CTCTTC	2 cut(s)	161, 605
BstACI	GRCGYC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	236, 490
BstENI	CCTNNNNNAGG	1 cut(s)	209
BstF5I	GGATG	3 cut(s)	93, 201, 544
BstFNI	CGCG	4 cut(s)	29, 38, 62, 108
BstHHI	GCGC	2 cut(s)	31, 64
BstKTI	GATC	8 cut(s)	27, 138, 195, 280, 316, 458, 514, 559
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	8 cut(s)	24, 135, 192, 277, 313, 455, 511, 556
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 35, 61
BstSFI	CTRYAG	1 cut(s)	342
BstUI	CGCG	4 cut(s)	29, 38, 62, 108
BstV1I	GCAGC	1 cut(s)	328
BstX2I	RGATCY	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	192
BstZI	CGGCCG	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	105, 174
BtsCI	GGATG	3 cut(s)	93, 201, 544
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	351
CciI	TCATGA	1 cut(s)	280
CfoI	GCGC	2 cut(s)	31, 64
Cfr13I	GGNCC	2 cut(s)	394, 409
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	1 cut(s)	281
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	236, 490
DpnI	GATC	8 cut(s)	26, 137, 194, 279, 315, 457, 513, 558
DpnII	GATC	8 cut(s)	24, 135, 192, 277, 313, 455, 511, 556
EaeI	YGGCCR	1 cut(s)	103
EagI	CGGCCG	1 cut(s)	103
Eam1104I	CTCTTC	2 cut(s)	161, 605
EarI	CTCTTC	2 cut(s)	161, 605
EciI	GGCGGA	1 cut(s)	70
Ecl136II	GAGCTC	1 cut(s)	598
EclXI	CGGCCG	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	390
Eco24I	GRGCYC	3 cut(s)	404, 489, 600
Eco47I	GGWCC	2 cut(s)	394, 409
Eco52I	CGGCCG	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	598
Eco88I	CYCGRG	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	598
EcoNI	CCTNNNNNAGG	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	390
EcoT22I	ATGCAT	1 cut(s)	433
EcoT38I	GRGCYC	3 cut(s)	404, 489, 600
ErhI	CCWWGG	1 cut(s)	390
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	1 cut(s)	284
FaiI	YATR	2 cut(s)	44, 282
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	1 cut(s)	280
FbaI	TGATCA	3 cut(s)	277, 313, 556
Fnu4HI	GCNGC	3 cut(s)	7, 106, 342
FokI	GGATG	3 cut(s)	80, 188, 551
FriOI	GRGCYC	3 cut(s)	404, 489, 600
Fsp4HI	GCNGC	3 cut(s)	7, 106, 342
FspBI	CTAG	1 cut(s)	449
GlaI	GCGC	2 cut(s)	30, 63
GluI	GCNGC	3 cut(s)	7, 106, 342
GsaI	CCCAGC	2 cut(s)	169, 187
HaeIII	GGCC	2 cut(s)	105, 174
HapII	CCGG	1 cut(s)	397
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	2 cut(s)	31, 64
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	284
Hin6I	GCGC	2 cut(s)	29, 62
HinP1I	GCGC	2 cut(s)	29, 62
HincII	GTYRAC	1 cut(s)	474
HindII	GTYRAC	1 cut(s)	474
HindIII	AAGCTT	2 cut(s)	47, 368
HinfI	GANTC	1 cut(s)	143
HpaI	GTTAAC	1 cut(s)	474
HpaII	CCGG	1 cut(s)	397
HphI	GGTGA	3 cut(s)	130, 323, 551
Hpy166II	GTNNAC	2 cut(s)	88, 474
Hpy188I	TCNGA	1 cut(s)	460
Hpy188III	TCNNGA	3 cut(s)	133, 190, 281
Hpy8I	GTNNAC	2 cut(s)	88, 474
Hpy99I	CGWCG	4 cut(s)	104, 128, 131, 134
HpyAV	CCTTC	1 cut(s)	341
HpyCH4IV	ACGT	2 cut(s)	126, 306
HpyCH4V	TGCA	2 cut(s)	344, 431
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 35, 61
HpyF3I	CTNAG	2 cut(s)	236, 490
HpySE526I	ACGT	2 cut(s)	126, 306
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	284
HspAI	GCGC	2 cut(s)	29, 62
Ksp22I	TGATCA	3 cut(s)	277, 313, 556
KspAI	GTTAAC	1 cut(s)	474
Kzo9I	GATC	8 cut(s)	24, 135, 192, 277, 313, 455, 511, 556
LguI	GCTCTTC	1 cut(s)	605
LmnI	GCTCC	4 cut(s)	214, 374, 399, 484
LpnPI	CCDG	7 cut(s)	179, 197, 410, 417, 425, 494, 521
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	3 cut(s)	102, 418, 440
MaeI	CTAG	1 cut(s)	449
MaeII	ACGT	2 cut(s)	126, 306
MaeIII	GTNAC	3 cut(s)	12, 223, 326
MalI	GATC	8 cut(s)	26, 137, 194, 279, 315, 457, 513, 558
MboI	GATC	8 cut(s)	24, 135, 192, 277, 313, 455, 511, 556
MboII	GAAGA	2 cut(s)	148, 592
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	4 cut(s)	351, 404, 489, 600
MluI	ACGCGT	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	433
Mph1103I	ATGCAT	1 cut(s)	433
MseI	TTAA	1 cut(s)	473
MslI	CAYNNNNRTG	1 cut(s)	564
MspI	CCGG	1 cut(s)	397
MvnI	CGCG	4 cut(s)	29, 38, 62, 108
MwoI	GCNNNNNNNGC	3 cut(s)	15, 35, 61
NdeII	GATC	8 cut(s)	24, 135, 192, 277, 313, 455, 511, 556
NlaIII	CATG	1 cut(s)	284
NlaIV	GGNNCC	2 cut(s)	401, 486
NmeAIII	GCCGAG	1 cut(s)	150
NsiI	ATGCAT	1 cut(s)	433
PaeR7I	CTCGAG	1 cut(s)	188
PagI	TCATGA	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	605
PcsI	WCGNNNNNNNCGW	5 cut(s)	96, 105, 129, 138, 303
PflFI	GACNNNGTC	2 cut(s)	128, 146
PkrI	GCNGC	3 cut(s)	8, 107, 343
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	600
Psp1406I	AACGTT	1 cut(s)	306
PspFI	CCCAGC	2 cut(s)	165, 183
PspN4I	GGNNCC	2 cut(s)	401, 486
PspPI	GGNCC	2 cut(s)	394, 409
PstI	CTGCAG	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	192
PsyI	GACNNNGTC	2 cut(s)	128, 146
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	564
SacI	GAGCTC	1 cut(s)	600
SapI	GCTCTTC	1 cut(s)	605
SaqAI	TTAA	1 cut(s)	473
SatI	GCNGC	3 cut(s)	7, 106, 342
Sau3AI	GATC	8 cut(s)	24, 135, 192, 277, 313, 455, 511, 556
Sau96I	GGNCC	2 cut(s)	394, 409
SchI	GAGTC	1 cut(s)	137
SduI	GDGCHC	4 cut(s)	351, 404, 489, 600
SfaNI	GCATC	3 cut(s)	102, 418, 440
SfcI	CTRYAG	1 cut(s)	342
Sfr274I	CTCGAG	1 cut(s)	188
SinI	GGWCC	2 cut(s)	394, 409
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	564
SmlI	CTYRAG	3 cut(s)	65, 188, 336
SmoI	CTYRAG	3 cut(s)	65, 188, 336
SsiI	CCGC	3 cut(s)	6, 81, 106
SspMI	CTAG	1 cut(s)	449
SstI	GAGCTC	1 cut(s)	600
StyI	CCWWGG	1 cut(s)	390
TaiI	ACGT	2 cut(s)	129, 309
TaqI	TCGA	3 cut(s)	132, 189, 434
TauI	GCSGC	2 cut(s)	9, 108
Tru1I	TTAA	1 cut(s)	473
Tru9I	TTAA	1 cut(s)	473
TscAI	CASTG	1 cut(s)	351
TseI	GCWGC	1 cut(s)	341
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	1 cut(s)	351
Tth111I	GACNNNGTC	2 cut(s)	128, 146
VpaK11BI	GGWCC	2 cut(s)	394, 409
XagI	CCTNNNNNAGG	1 cut(s)	209
XhoI	CTCGAG	1 cut(s)	188
XspI	CTAG	1 cut(s)	449
ZraI	GACGTC	1 cut(s)	127
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.