Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015248

Physical Location & Seq

Genomic Coordinates Forward (+)

82221781 .. 82225630

Gene Structure 3850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35124

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGGCGGCGAGTTACGCTACGAGATCACGCAGAACGCGTACATAAAGCTTGTGCTACACGCGCTCAAGCACAAGACCTCCGCTGTGAACGGCATCCTCGTCAGCCGCGTCTCCCCCAAAAACGACGTCGTCGAGATCATCGACTCCGTCCCTCTCTTCCACTCCCAGCTCGGCCTCCTCCCCCAGCTCGAGATCTCCCTCATCCTCATTGAGGAGCATTTTGTTACTAAAGGGCTGAACATTGTGGGATATTTTCACGCAAACGAGAGGTTTGATGATCATGAGCTTGGAAGCCTCGCCAAGAATGTTGGTGATCACATTTATCGTTACCTTCCTCAAGCTGCAGTGCTCTTGTTAGATAACAAGAAGCTTGGAGCTTTGTCAAAGACCAAGGACCGGAGCCCCGTGGTCCAGTTAGTTGGATCAGATGGAAATCAGTTGACGATCAAGGAGCCCTCAGCAAATGTTGTTCTACTGGATCACATCTCAACTGAAAAATGGCAGGATGTTGTAGATTTTGATGATCACCTTGATGACATTAGCAAGGATTGGCTGAACCCAGAGCTCTTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0072546 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0172

Protein Analysis

191

Amino Acids

21.44

Weight (kDa)

5.53

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UPF0172	PF03665	7 - 189	2.4e-55	Uncharacterised protein family (UPF0172)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55940
fragaria_vesca	FvH4_3g42640
malus_domestica	MD03G1030300.v1.1 MD11G1035300.v1.1
prunus_persica	Prupe.6G026500_v2.0.a1
pyrus_communis	pycom11g02930
rosa_chinensis	RchiOBHm_Chr5g0076271 RchiOBHm_Chr5g0076591
rosa_laevigata	RLG00000036612
rosa_multiflora	Rmu_sc0005961.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005590
rosa_rugosa	Rorug05G0446500
rosa_samantha	Rh5AG501700 Rh5BG523500 Rh5CG547200
rosa_wichuraiana	Rw0G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
AccII	CGCG	3 cut(s)	38, 62, 108
AciI	CCGC	3 cut(s)	6, 81, 106
AclWI	GGATC	2 cut(s)	430, 486
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	211, 396
AflIII	ACRYGT	1 cut(s)	36
AgsI	TTSAA	1 cut(s)	571
AluBI	AGCT	8 cut(s)	49, 169, 187, 286, 341, 370, 377, 565
AluI	AGCT	8 cut(s)	49, 169, 187, 286, 341, 370, 377, 565
Alw21I	GWGCWC	2 cut(s)	351, 567
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	2 cut(s)	430, 486
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	1 cut(s)	341
ArsI	GACNNNNNNTTYG	2 cut(s)	111, 143
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	2 cut(s)	394, 409
AsuHPI	GGTGA	2 cut(s)	323, 518
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	394, 409
BanII	GRGCYC	3 cut(s)	404, 456, 567
Bbv12I	GWGCWC	2 cut(s)	351, 567
BbvCI	CCTCAGC	1 cut(s)	457
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	1 cut(s)	422
BceAI	ACGGC	1 cut(s)	106
BclI	TGATCA	3 cut(s)	277, 313, 523
BcoDI	GTCTC	1 cut(s)	115
BfmI	CTRYAG	1 cut(s)	342
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	3 cut(s)	7, 106, 342
BlsI	GCNGC	3 cut(s)	8, 107, 343
Bme18I	GGWCC	2 cut(s)	394, 409
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	394, 409
BmiI	GGNNCC	2 cut(s)	401, 453
BmsI	GCATC	1 cut(s)	102
Bpu10I	CCTNAGC	1 cut(s)	457
BpuEI	CTTGAG	2 cut(s)	50, 321
BsaBI	GATNNNNATC	1 cut(s)	432
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	390, 405
BsaWI	WCCGGW	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 396
Bse1I	ACTGG	2 cut(s)	412, 480
Bse8I	GATNNNNATC	1 cut(s)	432
BseDI	CCNNGG	2 cut(s)	390, 405
BseGI	GGATG	3 cut(s)	93, 201, 511
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	2 cut(s)	211, 396
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	2 cut(s)	412, 480
BseRI	GAGGAG	2 cut(s)	167, 227
BseXI	GCAGC	1 cut(s)	328
BseYI	CCCAGC	2 cut(s)	165, 183
Bsh1236I	CGCG	3 cut(s)	38, 62, 108
BshFI	GGCC	1 cut(s)	174
BsiHKAI	GWGCWC	2 cut(s)	351, 567
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	397
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	211, 396
BsmAI	GTCTC	1 cut(s)	115
BsmBI	CGTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	174
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	4 cut(s)	351, 404, 456, 567
Bsp143I	GATC	9 cut(s)	24, 135, 192, 277, 313, 422, 444, 478, 523
BspACI	CCGC	3 cut(s)	6, 81, 106
BspANI	GGCC	1 cut(s)	174
BspCNI	CTCAG	1 cut(s)	470
BspFNI	CGCG	3 cut(s)	38, 62, 108
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	401, 453
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	2 cut(s)	430, 486
BspQI	GCTCTTC	1 cut(s)	572
BsrI	ACTGG	2 cut(s)	412, 480
BssECI	CCNNGG	2 cut(s)	390, 405
BssMI	GATC	9 cut(s)	24, 135, 192, 277, 313, 422, 444, 478, 523
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	390
Bst6I	CTCTTC	2 cut(s)	161, 572
BstACI	GRCGYC	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	457
BstDSI	CCRYGG	1 cut(s)	405
BstENI	CCTNNNNNAGG	1 cut(s)	209
BstF5I	GGATG	3 cut(s)	93, 201, 511
BstFNI	CGCG	3 cut(s)	38, 62, 108
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	9 cut(s)	27, 138, 195, 280, 316, 425, 447, 481, 526
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	9 cut(s)	24, 135, 192, 277, 313, 422, 444, 478, 523
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 61
BstSFI	CTRYAG	1 cut(s)	342
BstUI	CGCG	3 cut(s)	38, 62, 108
BstV1I	GCAGC	1 cut(s)	328
BstX2I	RGATCY	1 cut(s)	192
BstXI	CCANNNNNNTGG	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	174
BtgI	CCRYGG	1 cut(s)	405
BtsCI	GGATG	3 cut(s)	93, 201, 511
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	351
CciI	TCATGA	1 cut(s)	280
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	394, 409
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	1 cut(s)	281
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	1 cut(s)	457
DpnI	GATC	9 cut(s)	26, 137, 194, 279, 315, 424, 446, 480, 525
DpnII	GATC	9 cut(s)	24, 135, 192, 277, 313, 422, 444, 478, 523
Eam1104I	CTCTTC	2 cut(s)	161, 572
EarI	CTCTTC	2 cut(s)	161, 572
Ecl136II	GAGCTC	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	390
Eco24I	GRGCYC	3 cut(s)	404, 456, 567
Eco47I	GGWCC	2 cut(s)	394, 409
Eco53kI	GAGCTC	1 cut(s)	565
Eco88I	CYCGRG	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	565
EcoNI	CCTNNNNNAGG	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	390
EcoT38I	GRGCYC	3 cut(s)	404, 456, 567
ErhI	CCWWGG	1 cut(s)	390
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	1 cut(s)	284
FaiI	YATR	2 cut(s)	44, 282
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	1 cut(s)	280
FbaI	TGATCA	3 cut(s)	277, 313, 523
Fnu4HI	GCNGC	3 cut(s)	7, 106, 342
FokI	GGATG	3 cut(s)	80, 188, 518
FriOI	GRGCYC	3 cut(s)	404, 456, 567
Fsp4HI	GCNGC	3 cut(s)	7, 106, 342
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	3 cut(s)	7, 106, 342
GsaI	CCCAGC	2 cut(s)	169, 187
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	1 cut(s)	397
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	284
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HindIII	AAGCTT	2 cut(s)	47, 368
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	1 cut(s)	397
HphI	GGTGA	2 cut(s)	323, 518
Hpy166II	GTNNAC	2 cut(s)	88, 441
Hpy188I	TCNGA	1 cut(s)	427
Hpy188III	TCNNGA	3 cut(s)	133, 190, 281
Hpy8I	GTNNAC	2 cut(s)	88, 441
Hpy99I	CGWCG	3 cut(s)	128, 131, 134
HpyAV	CCTTC	1 cut(s)	341
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	1 cut(s)	344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 61
HpyF3I	CTNAG	1 cut(s)	457
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	284
HspAI	GCGC	1 cut(s)	62
Ksp22I	TGATCA	3 cut(s)	277, 313, 523
Kzo9I	GATC	9 cut(s)	24, 135, 192, 277, 313, 422, 444, 478, 523
LguI	GCTCTTC	1 cut(s)	572
LmnI	GCTCC	4 cut(s)	214, 374, 399, 451
LpnPI	CCDG	6 cut(s)	179, 197, 410, 425, 461, 488
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	1 cut(s)	102
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	3 cut(s)	12, 223, 326
MalI	GATC	9 cut(s)	26, 137, 194, 279, 315, 424, 446, 480, 525
MboI	GATC	9 cut(s)	24, 135, 192, 277, 313, 422, 444, 478, 523
MboII	GAAGA	2 cut(s)	148, 559
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	4 cut(s)	351, 404, 456, 567
MluI	ACGCGT	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	400
MslI	CAYNNNNRTG	1 cut(s)	531
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	1 cut(s)	397
MvnI	CGCG	3 cut(s)	38, 62, 108
MwoI	GCNNNNNNNGC	2 cut(s)	15, 61
NdeII	GATC	9 cut(s)	24, 135, 192, 277, 313, 422, 444, 478, 523
NlaIII	CATG	1 cut(s)	284
NlaIV	GGNNCC	2 cut(s)	401, 453
NmeAIII	GCCGAG	1 cut(s)	150
PaeR7I	CTCGAG	1 cut(s)	188
PagI	TCATGA	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	572
PcsI	WCGNNNNNNNCGW	5 cut(s)	35, 96, 105, 129, 138
PflFI	GACNNNGTC	2 cut(s)	128, 146
PkrI	GCNGC	3 cut(s)	8, 107, 343
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	567
PspFI	CCCAGC	2 cut(s)	165, 183
PspN4I	GGNNCC	2 cut(s)	401, 453
PspPI	GGNCC	2 cut(s)	394, 409
PstI	CTGCAG	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	192
PsyI	GACNNNGTC	2 cut(s)	128, 146
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	531
SacI	GAGCTC	1 cut(s)	567
SapI	GCTCTTC	1 cut(s)	572
SatI	GCNGC	3 cut(s)	7, 106, 342
Sau3AI	GATC	9 cut(s)	24, 135, 192, 277, 313, 422, 444, 478, 523
Sau96I	GGNCC	2 cut(s)	394, 409
SchI	GAGTC	1 cut(s)	137
SduI	GDGCHC	4 cut(s)	351, 404, 456, 567
SfaNI	GCATC	1 cut(s)	102
SfcI	CTRYAG	1 cut(s)	342
Sfr274I	CTCGAG	1 cut(s)	188
SinI	GGWCC	2 cut(s)	394, 409
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	3 cut(s)	65, 188, 336
SmoI	CTYRAG	3 cut(s)	65, 188, 336
SsiI	CCGC	3 cut(s)	6, 81, 106
SstI	GAGCTC	1 cut(s)	567
StyI	CCWWGG	1 cut(s)	390
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	3 cut(s)	132, 141, 189
TauI	GCSGC	2 cut(s)	9, 108
TscAI	CASTG	1 cut(s)	351
TseI	GCWGC	1 cut(s)	341
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	1 cut(s)	351
Tth111I	GACNNNGTC	2 cut(s)	128, 146
VpaK11BI	GGWCC	2 cut(s)	394, 409
XagI	CCTNNNNNAGG	1 cut(s)	209
XhoI	CTCGAG	1 cut(s)	188
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.