Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0015248

Physical Location & Seq

Genomic Coordinates Forward (+)

82519343 .. 82523221

Gene Structure 3879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036612

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGCGGCGAGTTGCGCTACGAGATCACACAGAACGCGTACATAAAGCTCGTGCTACACGCGCTCAAGCACAAGACCTCCGCCGTCAACGGCATCCTCGTCGGCCGCGTCTCCCCCAAAAACGACGTCGTCGAGATCACCGACTCCGTCCCTCTCTTCCACTCCCAGCTCGGCCTCCTCCCCCAGCTCGAGATCTCCCTCATCCTCATTGAGGAGCATTTTGCTTCTGAAGGATTGAGCATTGTGGGATATTTTCACGCAAACGAGAGGTTTGATGATCATGAGCTTGGAAGCCTGGCCAAGAATGTTGGTGATCACATTTATCGTTACCTTCCTCAATCTGCAGTGCTCTTGTTAGATAACAAGAAGCTTGGAGCTTTGTCAAAGACGAAGGACCGGAGCCCCGTGGTCCAGCTTTACACGAAAGATGCATCAAGGATTTGGAAGTTAGTTGGATCAGATGGAAATCAGTTGACGATCAAGGAGCCCTCAGCAAATGTTGTTCTACTGGATCACATCTCAACTGAAAAATGGCAGGATGTTGTAGATTTTGATGATCACCTTGATGACATTAGCAAGGATTGGCTGAACCCAGACCTCTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0072546 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0172

Protein Analysis

203

Amino Acids

22.69

Weight (kDa)

5.54

Isoelectric Point (pI)

36.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UPF0172	PF03665	7 - 200	3.5e-60	Uncharacterised protein family (UPF0172)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55940
fragaria_vesca	FvH4_3g42640
malus_domestica	MD03G1030300.v1.1 MD11G1035300.v1.1
prunus_persica	Prupe.6G026500_v2.0.a1
pyrus_communis	pycom11g02930
rosa_chinensis	RchiOBHm_Chr5g0076271 RchiOBHm_Chr5g0076591
rosa_laevigata	RLG00000036612
rosa_multiflora	Rmu_sc0005961.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005590
rosa_rugosa	Rorug05G0446500
rosa_samantha	Rh5AG501700 Rh5BG523500 Rh5CG547200
rosa_wichuraiana	Rw0G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
AccII	CGCG	3 cut(s)	38, 62, 108
AciI	CCGC	3 cut(s)	6, 81, 106
AclWI	GGATC	2 cut(s)	463, 519
AcoI	YGGCCR	2 cut(s)	103, 297
AcuI	CTGAAG	1 cut(s)	249
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	211
AflIII	ACRYGT	1 cut(s)	36
AgsI	TTSAA	1 cut(s)	604
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	7 cut(s)	49, 169, 187, 286, 370, 377, 415
AluI	AGCT	7 cut(s)	49, 169, 187, 286, 370, 377, 415
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	2 cut(s)	463, 519
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	3 cut(s)	103, 172, 297
ArsI	GACNNNNNNTTYG	2 cut(s)	111, 143
AspLEI	GCGC	2 cut(s)	18, 64
AspS9I	GGNCC	2 cut(s)	394, 409
AsuHPI	GGTGA	3 cut(s)	130, 323, 551
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	394, 409
BalI	TGGCCA	1 cut(s)	299
BanII	GRGCYC	2 cut(s)	404, 489
BauI	CACGAG	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	351
BbvCI	CCTCAGC	1 cut(s)	490
BccI	CCATC	1 cut(s)	455
BceAI	ACGGC	2 cut(s)	68, 106
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciT130I	CCWGG	1 cut(s)	296
BclI	TGATCA	3 cut(s)	277, 313, 556
BcoDI	GTCTC	1 cut(s)	115
BfmI	CTRYAG	1 cut(s)	342
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	2 cut(s)	7, 106
BlsI	GCNGC	2 cut(s)	8, 107
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	2 cut(s)	394, 409
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	394, 409
BmiI	GGNNCC	2 cut(s)	401, 486
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	3 cut(s)	102, 418, 440
Bpu10I	CCTNAGC	1 cut(s)	490
BpuEI	CTTGAG	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	465
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	405
BsaWI	WCCGGW	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	513
Bse8I	GATNNNNATC	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	405
BseGI	GGATG	3 cut(s)	93, 201, 544
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	1 cut(s)	513
BseRI	GAGGAG	2 cut(s)	167, 227
BseX3I	CGGCCG	1 cut(s)	103
BseYI	CCCAGC	2 cut(s)	165, 183
Bsh1236I	CGCG	3 cut(s)	38, 62, 108
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	3 cut(s)	105, 174, 299
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	351
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	397
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	115
BsmBI	CGTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	3 cut(s)	105, 174, 299
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	3 cut(s)	351, 404, 489
Bsp143I	GATC	9 cut(s)	24, 135, 192, 277, 313, 455, 477, 511, 556
BspACI	CCGC	3 cut(s)	6, 81, 106
BspANI	GGCC	3 cut(s)	105, 174, 299
BspCNI	CTCAG	1 cut(s)	503
BspFNI	CGCG	3 cut(s)	38, 62, 108
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	401, 486
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	2 cut(s)	463, 519
BsrI	ACTGG	1 cut(s)	513
BssECI	CCNNGG	1 cut(s)	405
BssMI	GATC	9 cut(s)	24, 135, 192, 277, 313, 455, 477, 511, 556
BssNI	GRCGYC	1 cut(s)	126
BssSI	CACGAG	1 cut(s)	50
Bst2BI	CACGAG	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	296
Bst6I	CTCTTC	2 cut(s)	161, 605
BstACI	GRCGYC	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	490
BstDSI	CCRYGG	1 cut(s)	405
BstENI	CCTNNNNNAGG	1 cut(s)	209
BstF5I	GGATG	3 cut(s)	93, 201, 544
BstFNI	CGCG	3 cut(s)	38, 62, 108
BstHHI	GCGC	2 cut(s)	18, 64
BstKTI	GATC	9 cut(s)	27, 138, 195, 280, 316, 458, 480, 514, 559
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	9 cut(s)	24, 135, 192, 277, 313, 455, 477, 511, 556
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 61
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	294
BstSFI	CTRYAG	1 cut(s)	342
BstUI	CGCG	3 cut(s)	38, 62, 108
BstX2I	RGATCY	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	192
BstZI	CGGCCG	1 cut(s)	103
BsuRI	GGCC	3 cut(s)	105, 174, 299
BtgI	CCRYGG	1 cut(s)	405
BtsCI	GGATG	3 cut(s)	93, 201, 544
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	351
CciI	TCATGA	1 cut(s)	280
CfoI	GCGC	2 cut(s)	18, 64
Cfr13I	GGNCC	2 cut(s)	394, 409
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	1 cut(s)	281
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	1 cut(s)	490
DpnI	GATC	9 cut(s)	26, 137, 194, 279, 315, 457, 479, 513, 558
DpnII	GATC	9 cut(s)	24, 135, 192, 277, 313, 455, 477, 511, 556
EaeI	YGGCCR	2 cut(s)	103, 297
EagI	CGGCCG	1 cut(s)	103
Eam1104I	CTCTTC	2 cut(s)	161, 605
EarI	CTCTTC	2 cut(s)	161, 605
EciI	GGCGGA	1 cut(s)	70
EclXI	CGGCCG	1 cut(s)	103
Eco24I	GRGCYC	2 cut(s)	404, 489
Eco47I	GGWCC	2 cut(s)	394, 409
Eco52I	CGGCCG	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	188
EcoNI	CCTNNNNNAGG	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	294
EcoT22I	ATGCAT	1 cut(s)	433
EcoT38I	GRGCYC	2 cut(s)	404, 489
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	1 cut(s)	284
FaiI	YATR	2 cut(s)	44, 282
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	1 cut(s)	280
FbaI	TGATCA	3 cut(s)	277, 313, 556
Fnu4HI	GCNGC	2 cut(s)	7, 106
FokI	GGATG	3 cut(s)	80, 188, 551
FriOI	GRGCYC	2 cut(s)	404, 489
Fsp4HI	GCNGC	2 cut(s)	7, 106
GlaI	GCGC	2 cut(s)	17, 63
GluI	GCNGC	2 cut(s)	7, 106
GsaI	CCCAGC	2 cut(s)	169, 187
HaeIII	GGCC	3 cut(s)	105, 174, 299
HapII	CCGG	1 cut(s)	397
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	2 cut(s)	18, 64
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	284
Hin6I	GCGC	2 cut(s)	16, 62
HinP1I	GCGC	2 cut(s)	16, 62
HincII	GTYRAC	2 cut(s)	88, 474
HindII	GTYRAC	2 cut(s)	88, 474
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	1 cut(s)	397
HphI	GGTGA	3 cut(s)	130, 323, 551
Hpy166II	GTNNAC	2 cut(s)	88, 474
Hpy188I	TCNGA	2 cut(s)	229, 460
Hpy188III	TCNNGA	3 cut(s)	133, 190, 281
Hpy8I	GTNNAC	2 cut(s)	88, 474
Hpy99I	CGWCG	4 cut(s)	104, 128, 131, 134
HpyAV	CCTTC	3 cut(s)	224, 341, 385
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	344, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 61
HpyF3I	CTNAG	1 cut(s)	490
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	284
HspAI	GCGC	2 cut(s)	16, 62
Ksp22I	TGATCA	3 cut(s)	277, 313, 556
Kzo9I	GATC	9 cut(s)	24, 135, 192, 277, 313, 455, 477, 511, 556
LmnI	GCTCC	4 cut(s)	214, 374, 399, 484
LpnPI	CCDG	8 cut(s)	179, 197, 281, 308, 410, 425, 494, 521
LweI	GCATC	3 cut(s)	102, 418, 440
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	9 cut(s)	26, 137, 194, 279, 315, 457, 479, 513, 558
MboI	GATC	9 cut(s)	24, 135, 192, 277, 313, 455, 477, 511, 556
MboII	GAAGA	2 cut(s)	148, 592
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	3 cut(s)	351, 404, 489
MlsI	TGGCCA	1 cut(s)	299
MluI	ACGCGT	1 cut(s)	36
MluNI	TGGCCA	1 cut(s)	299
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	433
Mox20I	TGGCCA	1 cut(s)	299
Mph1103I	ATGCAT	1 cut(s)	433
MscI	TGGCCA	1 cut(s)	299
MslI	CAYNNNNRTG	1 cut(s)	564
Msp20I	TGGCCA	1 cut(s)	299
MspI	CCGG	1 cut(s)	397
MspR9I	CCNGG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	296
MvnI	CGCG	3 cut(s)	38, 62, 108
MwoI	GCNNNNNNNGC	2 cut(s)	15, 61
NdeII	GATC	9 cut(s)	24, 135, 192, 277, 313, 455, 477, 511, 556
NlaIII	CATG	1 cut(s)	284
NlaIV	GGNNCC	2 cut(s)	401, 486
NmeAIII	GCCGAG	1 cut(s)	150
NsiI	ATGCAT	1 cut(s)	433
PaeR7I	CTCGAG	1 cut(s)	188
PagI	TCATGA	1 cut(s)	280
PcsI	WCGNNNNNNNCGW	4 cut(s)	96, 105, 129, 138
PflFI	GACNNNGTC	2 cut(s)	128, 146
PkrI	GCNGC	2 cut(s)	8, 107
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	294
PspFI	CCCAGC	2 cut(s)	165, 183
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	401, 486
PspPI	GGNCC	2 cut(s)	394, 409
PstI	CTGCAG	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	192
PsyI	GACNNNGTC	2 cut(s)	128, 146
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	564
SatI	GCNGC	2 cut(s)	7, 106
Sau3AI	GATC	9 cut(s)	24, 135, 192, 277, 313, 455, 477, 511, 556
Sau96I	GGNCC	2 cut(s)	394, 409
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	3 cut(s)	351, 404, 489
SfaNI	GCATC	3 cut(s)	102, 418, 440
SfcI	CTRYAG	1 cut(s)	342
Sfr274I	CTCGAG	1 cut(s)	188
SinI	GGWCC	2 cut(s)	394, 409
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	564
SmlI	CTYRAG	2 cut(s)	65, 188
SmoI	CTYRAG	2 cut(s)	65, 188
SsiI	CCGC	3 cut(s)	6, 81, 106
StyD4I	CCNGG	1 cut(s)	294
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	2 cut(s)	132, 189
TauI	GCSGC	2 cut(s)	9, 108
TscAI	CASTG	1 cut(s)	351
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	1 cut(s)	351
Tth111I	GACNNNGTC	2 cut(s)	128, 146
VpaK11BI	GGWCC	2 cut(s)	394, 409
XagI	CCTNNNNNAGG	1 cut(s)	209
XhoI	CTCGAG	1 cut(s)	188
ZraI	GACGTC	1 cut(s)	127
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.