Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014705

Physical Location & Seq

Genomic Coordinates Reverse (-)

2851791 .. 2854551

Gene Structure 2761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G037900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCTGGATCCCGTGGATGTGGATATTGCTGATTCTGATTTTCTCAACAACCAACTTGATAATGGAGACTCTTCTGACTCTGACATCGATAATTACTGCATGTCTTTTACTTGTAAGAATCGCTTATTCGGCCGCCAGAAGCCTCTTCATGTTGTCCTCGGCGCCGGTGTATCTGCTGACATTGTACTTTGGAGAAACAAGCAGATCTCGGCCTACATTTTTATGGGTGCTACACTTACATGGCTTCTCTTTGAGAGGACAGGTTATAACTTGGTTGTGTTTGTTTGCCATGCTTCATTGCTTTCATTGACAGCCCTGTTCTTGTGGTCCAATTTGGGTTCCTTCATCTATGTGTCTCCACCAGAAATTCCAGAGACTATCTTACCACAACATCTGTTTATGAGGACCGCTATTTCCTTGACAGCTACATATAATCAGGCATTAAGGTCGTTTCGGCATGTAGTTTTTGGGACAGACATAAGAGATTTCCTATCGGTGGCGGTGGTTTTGTGGGTTCTCTCTGTTGTCGGACGTCTATGCAGTTTCATGAGTTTCCTTTACATAGTGTTTGTGATACTGATGATTGTGCCAGCGCTGTATGACAACCTGGAGGATAGCGTTGACTCCTTTGCAGAGAGAGCACTAATTGCAATAAACAAGCAGTACGCAGTGTTGGATGAAAAAGTTATCCAAAAACTCAAAAAGAGTGTAATTTCTTCCAACAATAGGAAGCAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Reticulon

Protein Analysis

247

Amino Acids

27.78

Weight (kDa)

5.77

Isoelectric Point (pI)

37.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014705)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41210 FvH4_3g41210
malus_domestica	MD03G1046600.v1.1 MD11G1049400.v1.1
prunus_persica	Prupe.6G037900_v2.0.a1
pyrus_communis	pycom03g03660 pycom11g03980
rosa_chinensis	RchiOBHm_Chr5g0074001
rosa_laevigata	RLG00000036438
rosa_multiflora	Rmu_ssc0000463.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007380
rosa_rugosa	Rorug05G0428300
rosa_samantha	Rh5AG485500 Rh5BG505700 Rh5CG529400 Rh5DG518400
rosa_wichuraiana	Rw5G045060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
AatII	GACGTC	1 cut(s)	535
AccB1I	GGYRCC	1 cut(s)	161
AciI	CCGC	3 cut(s)	133, 408, 500
AclWI	GGATC	2 cut(s)	2, 15
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	366
AcyI	GRCGYC	2 cut(s)	162, 532
AfaI	GTAC	2 cut(s)	186, 665
AfeI	AGCGCT	1 cut(s)	594
AfiI	CCNNNNNNNGG	2 cut(s)	496, 726
AjnI	CCWGG	1 cut(s)	606
AluBI	AGCT	1 cut(s)	425
AluI	AGCT	1 cut(s)	425
Alw21I	GWGCWC	1 cut(s)	643
Alw26I	GTCTC	3 cut(s)	60, 360, 368
AlwI	GGATC	2 cut(s)	2, 15
Aor51HI	AGCGCT	1 cut(s)	594
AoxI	GGCC	2 cut(s)	130, 210
ApoI	RAATTY	1 cut(s)	366
AspLEI	GCGC	2 cut(s)	164, 595
AspS9I	GGNCC	2 cut(s)	327, 405
AvaII	GGWCC	2 cut(s)	327, 405
BamHI	GGATCC	1 cut(s)	7
BanI	GGYRCC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	643
BcgI	CGANNNNNNTGC	2 cut(s)	429, 463
BciT130I	CCWGG	1 cut(s)	608
BcoDI	GTCTC	3 cut(s)	60, 360, 368
BfoI	RGCGCY	2 cut(s)	165, 596
BglII	AGATCT	1 cut(s)	204
BisI	GCNGC	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	134
Bme1390I	CCNGG	1 cut(s)	608
Bme18I	GGWCC	2 cut(s)	327, 405
BmgT120I	GGNCC	2 cut(s)	327, 405
BmiI	GGNNCC	3 cut(s)	9, 163, 340
BmrFI	CCNGG	1 cut(s)	608
BpmI	CTGGAG	1 cut(s)	629
Bsa29I	ATCGAT	1 cut(s)	87
BsaHI	GRCGYC	2 cut(s)	162, 532
BsaJI	CCNNGG	2 cut(s)	12, 157
Bsc4I	CCNNNNNNNGG	2 cut(s)	496, 726
Bse118I	RCCGGY	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	296
BseBI	CCWGG	1 cut(s)	608
BseCI	ATCGAT	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	12, 157
BseGI	GGATG	2 cut(s)	22, 682
BseLI	CCNNNNNNNGG	2 cut(s)	496, 726
BseMI	GCAATG	1 cut(s)	296
BseX3I	CGGCCG	1 cut(s)	130
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	2 cut(s)	132, 212
BshNI	GGYRCC	1 cut(s)	161
BshVI	ATCGAT	1 cut(s)	87
BsiEI	CGRYCG	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	643
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	2 cut(s)	496, 726
BsmAI	GTCTC	3 cut(s)	60, 360, 368
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	2 cut(s)	132, 212
Bsp1286I	GDGCHC	1 cut(s)	643
Bsp143I	GATC	2 cut(s)	7, 204
BspACI	CCGC	3 cut(s)	133, 408, 500
BspANI	GGCC	2 cut(s)	132, 212
BspDI	ATCGAT	1 cut(s)	87
BspHI	TCATGA	1 cut(s)	546
BspLI	GGNNCC	3 cut(s)	9, 163, 340
BspPI	GGATC	2 cut(s)	2, 15
BspT107I	GGYRCC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	296
BsrFI	RCCGGY	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	2 cut(s)	12, 157
BssMI	GATC	2 cut(s)	7, 204
BssNI	GRCGYC	2 cut(s)	162, 532
Bst2UI	CCWGG	1 cut(s)	608
Bst6I	CTCTTC	2 cut(s)	76, 150
BstACI	GRCGYC	2 cut(s)	162, 532
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstC8I	GCNNGC	1 cut(s)	591
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	22, 682
BstH2I	RGCGCY	2 cut(s)	165, 596
BstHHI	GCGC	2 cut(s)	164, 595
BstKTI	GATC	2 cut(s)	10, 207
BstMAI	GTCTC	3 cut(s)	60, 360, 368
BstMBI	GATC	2 cut(s)	7, 204
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	3 cut(s)	129, 638, 647
BstNI	CCWGG	1 cut(s)	608
BstNSI	RCATGY	2 cut(s)	103, 461
BstSCI	CCNGG	1 cut(s)	606
BstX2I	RGATCY	2 cut(s)	7, 204
BstYI	RGATCY	2 cut(s)	7, 204
BstZI	CGGCCG	1 cut(s)	130
Bsu15I	ATCGAT	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	132, 212
BsuTUI	ATCGAT	1 cut(s)	87
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	2 cut(s)	22, 682
BtsI	GCAGTG	1 cut(s)	675
BtsIMutI	CAGTG	1 cut(s)	675
Cac8I	GCNNGC	1 cut(s)	591
CciI	TCATGA	1 cut(s)	546
CfoI	GCGC	2 cut(s)	164, 595
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	327, 405
ClaI	ATCGAT	1 cut(s)	87
Csp6I	GTAC	2 cut(s)	185, 664
CviAII	CATG	6 cut(s)	100, 149, 240, 290, 458, 547
CviJI	RGCY	6 cut(s)	132, 142, 212, 244, 314, 425
CviKI_1	RGCY	6 cut(s)	132, 142, 212, 244, 314, 425
CviQI	GTAC	2 cut(s)	185, 664
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	2 cut(s)	9, 206
DpnII	GATC	2 cut(s)	7, 204
EaeI	YGGCCR	1 cut(s)	130
EagI	CGGCCG	1 cut(s)	130
Eam1104I	CTCTTC	2 cut(s)	76, 150
EarI	CTCTTC	2 cut(s)	76, 150
EclXI	CGGCCG	1 cut(s)	130
Eco47I	GGWCC	2 cut(s)	327, 405
Eco47III	AGCGCT	1 cut(s)	594
Eco52I	CGGCCG	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	606
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
FaeI	CATG	6 cut(s)	103, 152, 243, 293, 461, 550
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	6 cut(s)	99, 148, 239, 289, 457, 546
Fnu4HI	GCNGC	1 cut(s)	133
FokI	GGATG	2 cut(s)	29, 689
Fsp4HI	GCNGC	1 cut(s)	133
GlaI	GCGC	2 cut(s)	163, 594
GluI	GCNGC	1 cut(s)	133
GsuI	CTGGAG	1 cut(s)	629
HaeII	RGCGCY	2 cut(s)	165, 596
HaeIII	GGCC	2 cut(s)	132, 212
HapII	CCGG	1 cut(s)	165
HhaI	GCGC	2 cut(s)	164, 595
Hin1I	GRCGYC	2 cut(s)	162, 532
Hin1II	CATG	6 cut(s)	103, 152, 243, 293, 461, 550
Hin6I	GCGC	2 cut(s)	162, 593
HinP1I	GCGC	2 cut(s)	162, 593
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HinfI	GANTC	5 cut(s)	32, 68, 77, 118, 623
HpaII	CCGG	1 cut(s)	165
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188I	TCNGA	4 cut(s)	37, 76, 82, 530
Hpy188III	TCNNGA	2 cut(s)	371, 547
Hpy8I	GTNNAC	1 cut(s)	622
HpyAV	CCTTC	1 cut(s)	352
HpyCH4IV	ACGT	1 cut(s)	532
HpyCH4V	TGCA	4 cut(s)	99, 540, 632, 650
HpyF10VI	GCNNNNNNNGC	3 cut(s)	129, 638, 647
HpySE526I	ACGT	1 cut(s)	532
Hsp92I	GRCGYC	2 cut(s)	162, 532
Hsp92II	CATG	6 cut(s)	103, 152, 243, 293, 461, 550
HspAI	GCGC	2 cut(s)	162, 593
KasI	GGCGCC	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	7, 204
MaeII	ACGT	1 cut(s)	532
MalI	GATC	2 cut(s)	9, 206
MboI	GATC	2 cut(s)	7, 204
MboII	GAAGA	3 cut(s)	63, 137, 708
MflI	RGATCY	2 cut(s)	7, 204
MhlI	GDGCHC	1 cut(s)	643
MluCI	AATT	5 cut(s)	91, 331, 366, 645, 711
Mly113I	GGCGCC	1 cut(s)	162
MlyI	GAGTC	3 cut(s)	62, 71, 617
MmeI	TCCRAC	2 cut(s)	508, 654
MnlI	CCTC	5 cut(s)	153, 167, 249, 396, 604
MseI	TTAA	1 cut(s)	443
MslI	CAYNNNNRTG	3 cut(s)	221, 238, 350
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	608
MvaI	CCWGG	1 cut(s)	608
MwoI	GCNNNNNNNGC	3 cut(s)	129, 638, 647
NarI	GGCGCC	1 cut(s)	162
NdeII	GATC	2 cut(s)	7, 204
NlaIII	CATG	6 cut(s)	103, 152, 243, 293, 461, 550
NlaIV	GGNNCC	3 cut(s)	9, 163, 340
NmeAIII	GCCGAG	2 cut(s)	138, 188
NspI	RCATGY	2 cut(s)	103, 461
PagI	TCATGA	1 cut(s)	546
PfeI	GAWTC	2 cut(s)	32, 118
PkrI	GCNGC	1 cut(s)	134
PleI	GAGTC	3 cut(s)	62, 71, 617
PluTI	GGCGCC	1 cut(s)	165
PpsI	GAGTC	3 cut(s)	62, 71, 617
PsiI	TTATAA	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	606
PspGI	CCWGG	1 cut(s)	606
PspN4I	GGNNCC	3 cut(s)	9, 163, 340
PspPI	GGNCC	2 cut(s)	327, 405
PsuI	RGATCY	2 cut(s)	7, 204
RsaI	GTAC	2 cut(s)	186, 665
RsaNI	GTAC	2 cut(s)	185, 664
RseI	CAYNNNNRTG	3 cut(s)	221, 238, 350
SaqAI	TTAA	1 cut(s)	443
SatI	GCNGC	1 cut(s)	133
Sau3AI	GATC	2 cut(s)	7, 204
Sau96I	GGNCC	2 cut(s)	327, 405
SchI	GAGTC	3 cut(s)	62, 71, 617
ScrFI	CCNGG	1 cut(s)	608
SduI	GDGCHC	1 cut(s)	643
SetI	ASST	5 cut(s)	265, 427, 449, 535, 609
SfoI	GGCGCC	1 cut(s)	163
SgrAI	CRCCGGYG	1 cut(s)	164
SinI	GGWCC	2 cut(s)	327, 405
SmiMI	CAYNNNNRTG	3 cut(s)	221, 238, 350
Sse9I	AATT	5 cut(s)	91, 331, 366, 645, 711
SsiI	CCGC	3 cut(s)	133, 408, 500
SspDI	GGCGCC	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	606
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	1 cut(s)	87
TasI	AATT	5 cut(s)	91, 331, 366, 645, 711
TatI	WGTACW	1 cut(s)	184
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	32, 118
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TscAI	CASTG	1 cut(s)	675
TspDTI	ATGAA	6 cut(s)	137, 285, 294, 334, 535, 693
TspRI	CASTG	1 cut(s)	675
VpaK11BI	GGWCC	2 cut(s)	327, 405
XapI	RAATTY	1 cut(s)	366
XceI	RCATGY	2 cut(s)	103, 461
XcmI	CCANNNNNNNNNTGG	1 cut(s)	59
ZraI	GACGTC	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.