Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000463.1

Orthogroup ID

OG0014705

Physical Location & Seq

Genomic Coordinates Forward (+)

284 .. 1405

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000463.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atgctagatcctgtggatgtggatattgctgattctgatttcctcaaaaaccaatgtgatggttatgaatcttccgactctgagattgataattactgcatggctttcacttgtaagaatcgattgtttggtcgccagaagcctcttcatgtggtcctcggcggcggattatgtgctgatataatactttggagaaataagcagatctcagcctatgtttgtatgggtgcaacaacaatatggattctatttgagaagcttggttatcatttgcttacatttgtttgccatgctacaataatttttatggcaacactattcctttggtccaatctatcctcctacatcaatattttcctcaggacggcaacggatattccggaggttacaatcccaaaagacctgtttgtgagcacggctgtttgcttaacgagtgcatataactgtgcactgagaacatttgggcatgtagcttttggaaaagactcgagagctttcctctcggcggttgcgcttttgtgggttctctctattgtcggaagatggtacagtttcttgagtttcctttacatagcgtttttgatattaatgacattgccactgctctatgaatgtcttgaggatactgtggacacctttgcagagaaagcactgattgaaataaagaagcagtatgcagtgttggacgaaaaggttctccaaaatctcaagaagaaagtaatttctgacaagaatagtaagcaacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Reticulon

Protein Analysis

249

Amino Acids

28.23

Weight (kDa)

6.08

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014705)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41210 FvH4_3g41210
malus_domestica	MD03G1046600.v1.1 MD11G1049400.v1.1
prunus_persica	Prupe.6G037900_v2.0.a1
pyrus_communis	pycom03g03660 pycom11g03980
rosa_chinensis	RchiOBHm_Chr5g0074001
rosa_laevigata	RLG00000036438
rosa_multiflora	Rmu_ssc0000463.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007380
rosa_rugosa	Rorug05G0428300
rosa_samantha	Rh5AG485500 Rh5BG505700 Rh5CG529400 Rh5DG518400
rosa_wichuraiana	Rw5G045060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	379
AciI	CCGC	3 cut(s)	162, 165, 506
AclWI	GGATC	1 cut(s)	2
AfaI	GTAC	1 cut(s)	548
AfiI	CCNNNNNNNGG	2 cut(s)	364, 505
AgsI	TTSAA	1 cut(s)	659
AluBI	AGCT	3 cut(s)	259, 473, 494
AluI	AGCT	3 cut(s)	259, 473, 494
Alw21I	GWGCWC	2 cut(s)	416, 451
Alw44I	GTGCAC	1 cut(s)	447
AlwI	GGATC	1 cut(s)	2
Ama87I	CYCGRG	1 cut(s)	487
Aor13HI	TCCGGA	1 cut(s)	379
ApaLI	GTGCAC	1 cut(s)	447
AseI	ATTAAT	1 cut(s)	587
Asp700I	GAANNNNTTC	1 cut(s)	693
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	2 cut(s)	154, 327
AvaI	CYCGRG	1 cut(s)	487
AvaII	GGWCC	2 cut(s)	154, 327
AxyI	CCTNAGG	1 cut(s)	359
BaeGI	GKGCMC	1 cut(s)	451
Bbv12I	GWGCWC	2 cut(s)	416, 451
BccI	CCATC	2 cut(s)	53, 537
BceAI	ACGGC	2 cut(s)	381, 432
BciVI	GTATCC	1 cut(s)	616
BfaI	CTAG	1 cut(s)	5
BfuI	GTATCC	1 cut(s)	616
BglII	AGATCT	1 cut(s)	204
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
Bme18I	GGWCC	2 cut(s)	154, 327
BmeT110I	CYCGRG	1 cut(s)	487
BmgT120I	GGNCC	2 cut(s)	154, 327
BplI	GAGNNNNNCTC	2 cut(s)	483, 515
BpuEI	CTTGAG	3 cut(s)	577, 638, 692
Bsa29I	ATCGAT	1 cut(s)	121
BsaJI	CCNNGG	1 cut(s)	157
BsaWI	WCCGGW	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	2 cut(s)	364, 505
Bse21I	CCTNAGG	1 cut(s)	359
Bse3DI	GCAATG	1 cut(s)	593
BseAI	TCCGGA	1 cut(s)	379
BseCI	ATCGAT	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	2 cut(s)	364, 505
BseMI	GCAATG	1 cut(s)	593
BseMII	CTCAG	4 cut(s)	72, 222, 373, 443
BseSI	GKGCMC	1 cut(s)	451
BshVI	ATCGAT	1 cut(s)	121
BsiHKAI	GWGCWC	2 cut(s)	416, 451
BsiHKCI	CYCGRG	1 cut(s)	487
BsiSI	CCGG	1 cut(s)	380
BslI	CCNNNNNNNGG	2 cut(s)	364, 505
BsoBI	CYCGRG	1 cut(s)	487
Bsp1286I	GDGCHC	2 cut(s)	416, 451
Bsp13I	TCCGGA	1 cut(s)	379
Bsp143I	GATC	2 cut(s)	7, 204
BspACI	CCGC	3 cut(s)	162, 165, 506
BspCNI	CTCAG	4 cut(s)	73, 221, 372, 444
BspDI	ATCGAT	1 cut(s)	121
BspEI	TCCGGA	1 cut(s)	379
BspPI	GGATC	1 cut(s)	2
BsrDI	GCAATG	1 cut(s)	593
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	2 cut(s)	7, 204
Bst4CI	ACNGT	3 cut(s)	446, 551, 628
Bst6I	CTCTTC	1 cut(s)	150
BstDEI	CTNAG	4 cut(s)	81, 208, 359, 452
BstF5I	GGATG	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	2 cut(s)	10, 207
BstMBI	GATC	2 cut(s)	7, 204
BstMWI	GCNNNNNNNGC	1 cut(s)	647
BstNSI	RCATGY	1 cut(s)	470
BstSLI	GKGCMC	1 cut(s)	451
BstX2I	RGATCY	2 cut(s)	7, 204
BstXI	CCANNNNNNTGG	1 cut(s)	59
BstYI	RGATCY	2 cut(s)	7, 204
Bsu15I	ATCGAT	1 cut(s)	121
Bsu36I	CCTNAGG	1 cut(s)	359
BsuI	GTATCC	1 cut(s)	616
BsuTUI	ATCGAT	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	22
BtsI	GCAGTG	2 cut(s)	599, 684
BtsIMutI	CAGTG	4 cut(s)	449, 599, 650, 684
CfoI	GCGC	1 cut(s)	514
Cfr13I	GGNCC	2 cut(s)	154, 327
ClaI	ATCGAT	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	4 cut(s)	100, 149, 290, 467
CviJI	RGCY	7 cut(s)	104, 142, 212, 259, 419, 473, 494
CviKI_1	RGCY	7 cut(s)	104, 142, 212, 259, 419, 473, 494
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	4 cut(s)	81, 208, 359, 452
DpnI	GATC	2 cut(s)	9, 206
DpnII	GATC	2 cut(s)	7, 204
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	180
Eco47I	GGWCC	2 cut(s)	154, 327
Eco81I	CCTNAGG	1 cut(s)	359
Eco88I	CYCGRG	1 cut(s)	487
FaeI	CATG	4 cut(s)	103, 152, 293, 470
FatI	CATG	4 cut(s)	99, 148, 289, 466
Fnu4HI	GCNGC	1 cut(s)	163
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	163
FspBI	CTAG	1 cut(s)	5
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	1 cut(s)	163
HapII	CCGG	1 cut(s)	380
HhaI	GCGC	1 cut(s)	514
Hin1II	CATG	4 cut(s)	103, 152, 293, 470
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	6 cut(s)	32, 68, 77, 118, 244, 485
HpaII	CCGG	1 cut(s)	380
Hpy166II	GTNNAC	2 cut(s)	449, 631
Hpy188I	TCNGA	5 cut(s)	37, 76, 82, 539, 727
Hpy188III	TCNNGA	6 cut(s)	361, 380, 489, 556, 617, 709
Hpy8I	GTNNAC	2 cut(s)	449, 631
HpyCH4III	ACNGT	3 cut(s)	446, 551, 628
HpyCH4V	TGCA	6 cut(s)	99, 230, 437, 449, 641, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	647
HpyF3I	CTNAG	4 cut(s)	81, 208, 359, 452
Hsp92II	CATG	4 cut(s)	103, 152, 293, 470
HspAI	GCGC	1 cut(s)	512
Kpn2I	TCCGGA	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	7, 204
LpnPI	CCDG	5 cut(s)	24, 149, 346, 393, 416
MaeI	CTAG	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	2 cut(s)	9, 206
MboI	GATC	2 cut(s)	7, 204
MboII	GAAGA	4 cut(s)	63, 137, 552, 724
MflI	RGATCY	2 cut(s)	7, 204
MhlI	GDGCHC	2 cut(s)	416, 451
MluCI	AATT	3 cut(s)	91, 300, 720
MlyI	GAGTC	2 cut(s)	71, 479
MmeI	TCCRAC	3 cut(s)	99, 517, 663
MnlI	CCTC	8 cut(s)	53, 153, 167, 349, 368, 376, 509, 613
MroI	TCCGGA	1 cut(s)	379
MroXI	GAANNNNTTC	1 cut(s)	693
MseI	TTAA	2 cut(s)	428, 587
MspI	CCGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	1 cut(s)	647
NdeII	GATC	2 cut(s)	7, 204
NlaIII	CATG	4 cut(s)	103, 152, 293, 470
NmeAIII	GCCGAG	2 cut(s)	138, 482
NspI	RCATGY	1 cut(s)	470
PaeR7I	CTCGAG	1 cut(s)	487
PdmI	GAANNNNTTC	1 cut(s)	693
PfeI	GAWTC	4 cut(s)	32, 68, 118, 244
PkrI	GCNGC	1 cut(s)	164
PleI	GAGTC	2 cut(s)	71, 479
PpsI	GAGTC	2 cut(s)	71, 479
PshBI	ATTAAT	1 cut(s)	587
PspPI	GGNCC	2 cut(s)	154, 327
PsuI	RGATCY	2 cut(s)	7, 204
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
SaqAI	TTAA	2 cut(s)	428, 587
SatI	GCNGC	1 cut(s)	163
Sau3AI	GATC	2 cut(s)	7, 204
Sau96I	GGNCC	2 cut(s)	154, 327
SchI	GAGTC	2 cut(s)	71, 479
SduI	GDGCHC	2 cut(s)	416, 451
SetI	ASST	7 cut(s)	261, 387, 405, 475, 496, 638, 696
Sfr274I	CTCGAG	1 cut(s)	487
SinI	GGWCC	2 cut(s)	154, 327
SlaI	CTCGAG	1 cut(s)	487
SmlI	CTYRAG	4 cut(s)	487, 556, 617, 707
SmoI	CTYRAG	4 cut(s)	487, 556, 617, 707
Sse9I	AATT	3 cut(s)	91, 300, 720
SsiI	CCGC	3 cut(s)	162, 165, 506
SspI	AATATT	1 cut(s)	352
SspMI	CTAG	1 cut(s)	5
TaaI	ACNGT	3 cut(s)	446, 551, 628
TaqI	TCGA	2 cut(s)	121, 488
TasI	AATT	3 cut(s)	91, 300, 720
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	4 cut(s)	32, 68, 118, 244
Tru1I	TTAA	2 cut(s)	428, 587
Tru9I	TTAA	2 cut(s)	428, 587
TscAI	CASTG	4 cut(s)	456, 606, 657, 684
TspDTI	ATGAA	3 cut(s)	81, 137, 624
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	4 cut(s)	456, 606, 657, 684
VneI	GTGCAC	1 cut(s)	447
VpaK11BI	GGWCC	2 cut(s)	154, 327
VspI	ATTAAT	1 cut(s)	587
XceI	RCATGY	1 cut(s)	470
XhoI	CTCGAG	1 cut(s)	487
XmnI	GAANNNNTTC	1 cut(s)	693
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.