pycom11g03980

endoplasmic reticulum tubular network organization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0014705
Physical Location & Seq
Reverse (-)
3105206 .. 3105690
485 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g03980.1

Sequence Viewer

Length: 351 bp
ATGCATAGAAACATTAAACGTATACATAAAATGCTGGATCCGGTGGATGTGGATATTGCAGATTCTGATTTTCTCACCAACCAATCAGATCTTGATGACTCTTCCGACTCCGACATTGATAATTACTGCTTGGCTTTTACATGCAAGAACCGATTGTTTGGTCGCCAGAAGCCTCTCCATGTTGTCCTTGGCGCCGGTATCTCAGCCTACATTTTTATGGGTGCAACACTCACATGGCTTCTATTTGAGAGATTAGGTTATAGTTTGGTTGTGTTTTTTTGCCACGCTTCATTGCTCTCCTTGACAGCCTTGTTCTTGTGGTCGAATTTTGGTTCCTTAATCCATGTGTGA

Protein Analysis

117

Amino Acids

13.13

Weight (kDa)

5.86

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 67 - 115 1.8e-08 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g41210 FvH4_3g41210
malus_domestica MD03G1046600.v1.1 MD11G1049400.v1.1
prunus_persica Prupe.6G037900_v2.0.a1
pyrus_communis pycom03g03660 pycom11g03980
rosa_chinensis RchiOBHm_Chr5g0074001
rosa_laevigata RLG00000036438
rosa_multiflora Rmu_ssc0000463.1_g000001
rosa_roxburghii Rroxscaffold_1G00007380
rosa_rugosa Rorug05G0428300
rosa_samantha Rh5AG485500 Rh5BG505700 Rh5CG529400 Rh5DG518400
rosa_wichuraiana Rw5G045060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AccI GTMKAC 1 cut(s) 22
AclWI GGATC 2 cut(s) 32, 45
AcsI RAATTY 1 cut(s) 325
AcyI GRCGYC 1 cut(s) 192
AlwI GGATC 2 cut(s) 32, 45
AlwNI CAGNNNCTG 1 cut(s) 65
ApoI RAATTY 1 cut(s) 325
AspLEI GCGC 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 67
BamHI GGATCC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 191
BfoI RGCGCY 1 cut(s) 195
BglII AGATCT 1 cut(s) 88
BmiI GGNNCC 3 cut(s) 39, 193, 334
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 187
BsaWI WCCGGW 1 cut(s) 40
Bse118I RCCGGY 1 cut(s) 194
Bse3DI GCAATG 1 cut(s) 290
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 1 cut(s) 52
BseMI GCAATG 1 cut(s) 290
BseMII CTCAG 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 191
BsiSI CCGG 2 cut(s) 41, 195
Bsp143I GATC 2 cut(s) 37, 88
BspCNI CTCAG 1 cut(s) 215
BspLI GGNNCC 3 cut(s) 39, 193, 334
BspPI GGATC 2 cut(s) 32, 45
BspT107I GGYRCC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 290
BsrFI RCCGGY 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 2 cut(s) 37, 88
BssNAI GTATAC 1 cut(s) 23
BssNI GRCGYC 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 187
Bst1107I GTATAC 1 cut(s) 23
Bst6I CTCTTC 1 cut(s) 106
BstACI GRCGYC 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 202
BstF5I GGATG 1 cut(s) 52
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 2 cut(s) 40, 91
BstMBI GATC 2 cut(s) 37, 88
BstNSI RCATGY 1 cut(s) 144
BstX2I RGATCY 2 cut(s) 37, 88
BstYI RGATCY 2 cut(s) 37, 88
BstZ17I GTATAC 1 cut(s) 23
BtsCI GGATG 1 cut(s) 52
CaiI CAGNNNCTG 1 cut(s) 65
CfoI GCGC 1 cut(s) 194
Cfr10I RCCGGY 1 cut(s) 194
CviAII CATG 4 cut(s) 141, 179, 234, 344
CviJI RGCY 5 cut(s) 134, 172, 206, 238, 308
CviKI_1 RGCY 5 cut(s) 134, 172, 206, 238, 308
DdeI CTNAG 1 cut(s) 202
DinI GGCGCC 1 cut(s) 193
DpnI GATC 2 cut(s) 39, 90
DpnII GATC 2 cut(s) 37, 88
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 187
EcoT22I ATGCAT 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 193
EheI GGCGCC 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 4 cut(s) 144, 182, 237, 347
FaiI YATR 9 cut(s) 6, 23, 27, 142, 180, 218, 235, 261, 345
FatI CATG 4 cut(s) 140, 178, 233, 343
FblI GTMKAC 1 cut(s) 22
FokI GGATG 1 cut(s) 59
GlaI GCGC 1 cut(s) 193
HaeII RGCGCY 1 cut(s) 195
HapII CCGG 2 cut(s) 41, 195
HhaI GCGC 1 cut(s) 194
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 4 cut(s) 144, 182, 237, 347
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HinfI GANTC 3 cut(s) 62, 98, 107
HpaII CCGG 2 cut(s) 41, 195
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 4 cut(s) 67, 88, 106, 112
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 23
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 4 cut(s) 4, 59, 144, 224
HpyF3I CTNAG 1 cut(s) 202
HpySE526I ACGT 1 cut(s) 19
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 4 cut(s) 144, 182, 237, 347
HspAI GCGC 1 cut(s) 192
KasI GGCGCC 1 cut(s) 191
Kzo9I GATC 2 cut(s) 37, 88
LpnPI CCDG 4 cut(s) 20, 54, 179, 208
MaeII ACGT 1 cut(s) 19
MalI GATC 2 cut(s) 39, 90
MboI GATC 2 cut(s) 37, 88
MboII GAAGA 1 cut(s) 93
MflI RGATCY 2 cut(s) 37, 88
MluCI AATT 2 cut(s) 121, 325
Mly113I GGCGCC 1 cut(s) 192
MlyI GAGTC 2 cut(s) 92, 101
MmeI TCCRAC 2 cut(s) 129, 135
MnlI CCTC 1 cut(s) 183
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 15, 338
MslI CAYNNNNRTG 2 cut(s) 215, 232
MspI CCGG 2 cut(s) 41, 195
NarI GGCGCC 1 cut(s) 192
NdeII GATC 2 cut(s) 37, 88
NlaIII CATG 4 cut(s) 144, 182, 237, 347
NlaIV GGNNCC 3 cut(s) 39, 193, 334
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 144
PfeI GAWTC 1 cut(s) 62
PleI GAGTC 2 cut(s) 92, 101
PluTI GGCGCC 1 cut(s) 195
PpsI GAGTC 2 cut(s) 92, 101
PspN4I GGNNCC 3 cut(s) 39, 193, 334
PstNI CAGNNNCTG 1 cut(s) 65
PsuI RGATCY 2 cut(s) 37, 88
RseI CAYNNNNRTG 2 cut(s) 215, 232
SaqAI TTAA 2 cut(s) 15, 338
Sau3AI GATC 2 cut(s) 37, 88
SchI GAGTC 2 cut(s) 92, 101
SetI ASST 2 cut(s) 22, 259
SfoI GGCGCC 1 cut(s) 193
SmiMI CAYNNNNRTG 2 cut(s) 215, 232
Sse9I AATT 2 cut(s) 121, 325
SspDI GGCGCC 1 cut(s) 191
StyI CCWWGG 1 cut(s) 187
TaiI ACGT 1 cut(s) 22
TaqI TCGA 1 cut(s) 323
TasI AATT 2 cut(s) 121, 325
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 2 cut(s) 15, 338
Tru9I TTAA 2 cut(s) 15, 338
TspDTI ATGAA 1 cut(s) 279
XapI RAATTY 1 cut(s) 325
XceI RCATGY 1 cut(s) 144
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
XmiI GTMKAC 1 cut(s) 22
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.