Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005141

Physical Location & Seq

Genomic Coordinates Forward (+)

3844170 .. 3844951

Gene Structure 782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G054700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGAGTTCAAGCTCTTGTTGGACCGGTACAAGAACCACAACCTCGTCGTCCACGACTGGGCCCACCTGGTCATGGAGACGCACAGTTGGACGGGGCTCAACGCTGGCGTGTTCTTGATCAGGAACTGCCAGTGGACCATGGATTTCCAACGAGCTCGACCTCCACGCCACACCAAGATCTCCGTCATCGGCGCTGGCAACGTGGGCATGGCCATCGCTCAGACCATCCTTACCCAGGACCTCGCCGACGAGCTCGTCCTCGTCGACGCCAAACCAGAGAAGCTCCGCGGTGAGATGATCTACCTCCAGCACGCCGCAGCCTTCCTCCCCCTCACCAAGATCATCGCCGACGTCGACTACGCCGTCACCCAAGGATCCGACCTCTGCATCGTCACCGCTGGGGCCCGCCAGATCCTCGGCGAGTCCAGGCTCAACCTGCTCCACCGGAACGTAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00270 ko00620 ko00640 ko01100 ko01110 ko01120 ko01130 ko04922 map00010 map00270 map00620 map00640 map01100 map01110 map01120 map01130 map04922

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

153

Amino Acids

17.07

Weight (kDa)

7.06

Isoelectric Point (pI)

11.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17260
fragaria_vesca	FvH4_5g00090
malus_domestica	MD16G1010900.v1.1
prunus_persica	Prupe.1G339800_v2.0.a1 Prupe.5G072700_v2.0.a1 Prupe.6G054700_v2.0.a1
pyrus_communis	pycom06g05170 pycom16g01070
rosa_chinensis	RchiOBHm_Chr4g0406091 RchiOBHm_Chr4g0445541 RchiOBHm_Chr7g0202841
rosa_laevigata	RLG00000003568 RLG00000005731
rosa_multiflora	Rmu_co8326923.1_g000001 Rmu_ssc0000253.1_g000006
rosa_roxburghii	Rroxscaffold_3G00254220 Rroxscaffold_5G00379710 Rroxscaffold_5G00386020
rosa_rugosa	Rorug04G0362400 Rorug07G0073400.1
rosa_samantha	Rh4AG423800 Rh4BG435800 Rh4CG450500 Rh4DG432100 Rh7AG201200 Rh7BG201500 Rh7CG212600 Rh7DG208200
rosa_wichuraiana	Rw4G036320 Rw7G017600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	254, 362
AatII	GACGTC	1 cut(s)	354
Acc36I	ACCTGC	1 cut(s)	444
AccI	GTMKAC	2 cut(s)	264, 354
AccII	CGCG	1 cut(s)	288
AciI	CCGC	5 cut(s)	286, 288, 315, 396, 406
AclWI	GGATC	3 cut(s)	369, 382, 406
AcoI	YGGCCR	1 cut(s)	210
AcyI	GRCGYC	2 cut(s)	267, 351
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	3 cut(s)	58, 73, 235
AgeI	ACCGGT	1 cut(s)	24
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	3 cut(s)	66, 234, 425
AluBI	AGCT	4 cut(s)	13, 155, 253, 283
AluI	AGCT	4 cut(s)	13, 155, 253, 283
Alw21I	GWGCWC	2 cut(s)	157, 255
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	3 cut(s)	369, 382, 406
AlwNI	CAGNNNCTG	1 cut(s)	126
AoxI	GGCC	3 cut(s)	60, 210, 402
ApaI	GGGCCC	2 cut(s)	64, 406
ApeKI	GCWGC	1 cut(s)	317
AsiGI	ACCGGT	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	7 cut(s)	22, 60, 61, 135, 238, 402, 403
AsuHPI	GGTGA	4 cut(s)	302, 325, 358, 385
AvaII	GGWCC	3 cut(s)	22, 135, 238
BaeGI	GKGCMC	2 cut(s)	64, 406
BalI	TGGCCA	1 cut(s)	212
BamHI	GGATCC	1 cut(s)	374
BanII	GRGCYC	5 cut(s)	64, 99, 157, 255, 406
Bbv12I	GWGCWC	2 cut(s)	157, 255
BbvI	GCAGC	1 cut(s)	329
BccI	CCATC	2 cut(s)	221, 233
BceAI	ACGGC	1 cut(s)	347
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BciT130I	CCWGG	3 cut(s)	68, 236, 427
BclI	TGATCA	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	71
BfoI	RGCGCY	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	444
BglII	AGATCT	1 cut(s)	177
BisI	GCNGC	2 cut(s)	315, 318
BlsI	GCNGC	2 cut(s)	316, 319
Bme1390I	CCNGG	3 cut(s)	68, 236, 427
Bme18I	GGWCC	3 cut(s)	22, 135, 238
BmgT120I	GGNCC	7 cut(s)	22, 60, 61, 135, 238, 402, 403
BmiI	GGNNCC	4 cut(s)	62, 376, 403, 404
BmrFI	CCNGG	3 cut(s)	68, 236, 427
BmrI	ACTGGG	1 cut(s)	67
BmsI	GCATC	1 cut(s)	396
BmuI	ACTGGG	1 cut(s)	67
BpmI	CTGGAG	1 cut(s)	290
BsaHI	GRCGYC	2 cut(s)	267, 351
BsaJI	CCNNGG	5 cut(s)	138, 234, 286, 370, 415
BsaWI	WCCGGW	2 cut(s)	24, 444
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 73, 235
Bse118I	RCCGGY	1 cut(s)	24
Bse1I	ACTGG	2 cut(s)	62, 130
BseBI	CCWGG	3 cut(s)	68, 236, 427
BseDI	CCNNGG	5 cut(s)	138, 234, 286, 370, 415
BseGI	GGATG	1 cut(s)	225
BseLI	CCNNNNNNNGG	3 cut(s)	58, 73, 235
BseMII	CTCAG	1 cut(s)	233
BseNI	ACTGG	2 cut(s)	62, 130
BseSI	GKGCMC	2 cut(s)	64, 406
BseXI	GCAGC	1 cut(s)	329
BseYI	CCCAGC	1 cut(s)	398
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	3 cut(s)	62, 212, 404
BshTI	ACCGGT	1 cut(s)	24
BsiHKAI	GWGCWC	2 cut(s)	157, 255
BsiSI	CCGG	2 cut(s)	25, 445
BslI	CCNNNNNNNGG	3 cut(s)	58, 73, 235
BsmAI	GTCTC	1 cut(s)	71
BsmBI	CGTCTC	1 cut(s)	71
BsnI	GGCC	3 cut(s)	62, 212, 404
Bsp120I	GGGCCC	2 cut(s)	60, 402
Bsp1286I	GDGCHC	5 cut(s)	64, 99, 157, 255, 406
Bsp143I	GATC	6 cut(s)	117, 177, 297, 339, 374, 411
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	5 cut(s)	286, 288, 315, 396, 406
BspANI	GGCC	3 cut(s)	62, 212, 404
BspCNI	CTCAG	1 cut(s)	232
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	4 cut(s)	62, 376, 403, 404
BspMI	ACCTGC	1 cut(s)	444
BspPI	GGATC	3 cut(s)	369, 382, 406
BsrFI	RCCGGY	1 cut(s)	24
BsrI	ACTGG	2 cut(s)	62, 130
BssAI	RCCGGY	1 cut(s)	24
BssECI	CCNNGG	5 cut(s)	138, 234, 286, 370, 415
BssMI	GATC	6 cut(s)	117, 177, 297, 339, 374, 411
BssNI	GRCGYC	2 cut(s)	267, 351
BssT1I	CCWWGG	2 cut(s)	138, 370
Bst2UI	CCWGG	3 cut(s)	68, 236, 427
Bst4CI	ACNGT	1 cut(s)	86
BstACI	GRCGYC	2 cut(s)	267, 351
BstC8I	GCNNGC	4 cut(s)	106, 196, 312, 406
BstDEI	CTNAG	1 cut(s)	219
BstDSI	CCRYGG	2 cut(s)	138, 286
BstENI	CCTNNNNNAGG	1 cut(s)	233
BstF5I	GGATG	1 cut(s)	225
BstFNI	CGCG	1 cut(s)	288
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	6 cut(s)	120, 180, 300, 342, 377, 414
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	6 cut(s)	117, 177, 297, 339, 374, 411
BstMWI	GCNNNNNNNGC	2 cut(s)	204, 436
BstNI	CCWGG	3 cut(s)	68, 236, 427
BstSCI	CCNGG	3 cut(s)	66, 234, 425
BstSLI	GKGCMC	2 cut(s)	64, 406
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	329
BstX2I	RGATCY	3 cut(s)	177, 374, 411
BstYI	RGATCY	3 cut(s)	177, 374, 411
BsuRI	GGCC	3 cut(s)	62, 212, 404
BtgI	CCRYGG	2 cut(s)	138, 286
BtgZI	GCGATG	2 cut(s)	199, 328
BtsCI	GGATG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	137
BveI	ACCTGC	1 cut(s)	444
Cac8I	GCNNGC	4 cut(s)	106, 196, 312, 406
CaiI	CAGNNNCTG	1 cut(s)	126
CfoI	GCGC	1 cut(s)	194
Cfr10I	RCCGGY	1 cut(s)	24
Cfr13I	GGNCC	7 cut(s)	22, 60, 61, 135, 238, 402, 403
Cfr42I	CCGCGG	1 cut(s)	289
CseI	GACGC	2 cut(s)	88, 275
CsiI	ACCWGGT	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	28
CspAI	ACCGGT	1 cut(s)	24
CviAII	CATG	3 cut(s)	73, 139, 208
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	6 cut(s)	119, 179, 299, 341, 376, 413
DpnII	GATC	6 cut(s)	117, 177, 297, 339, 374, 411
DrdI	GACNNNNNNGTC	2 cut(s)	254, 362
DseDI	GACNNNNNNGTC	2 cut(s)	254, 362
EaeI	YGGCCR	1 cut(s)	210
Ecl136II	GAGCTC	2 cut(s)	155, 253
Eco130I	CCWWGG	2 cut(s)	138, 370
Eco24I	GRGCYC	5 cut(s)	64, 99, 157, 255, 406
Eco47I	GGWCC	3 cut(s)	22, 135, 238
Eco53kI	GAGCTC	2 cut(s)	155, 253
EcoICRI	GAGCTC	2 cut(s)	155, 253
EcoNI	CCTNNNNNAGG	1 cut(s)	233
EcoO109I	RGGNCCY	2 cut(s)	238, 402
EcoRII	CCWGG	3 cut(s)	66, 234, 425
EcoT14I	CCWWGG	2 cut(s)	138, 370
EcoT38I	GRGCYC	5 cut(s)	64, 99, 157, 255, 406
ErhI	CCWWGG	2 cut(s)	138, 370
Esp3I	CGTCTC	1 cut(s)	71
FaeI	CATG	3 cut(s)	76, 142, 211
FaiI	YATR	4 cut(s)	74, 140, 209, 457
FatI	CATG	3 cut(s)	72, 138, 207
FauI	CCCGC	1 cut(s)	413
FbaI	TGATCA	1 cut(s)	117
FblI	GTMKAC	2 cut(s)	264, 354
Fnu4HI	GCNGC	2 cut(s)	315, 318
FokI	GGATG	1 cut(s)	212
FriOI	GRGCYC	5 cut(s)	64, 99, 157, 255, 406
Fsp4HI	GCNGC	2 cut(s)	315, 318
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	2 cut(s)	315, 318
GsaI	CCCAGC	1 cut(s)	402
GsuI	CTGGAG	1 cut(s)	290
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	3 cut(s)	62, 212, 404
HapII	CCGG	2 cut(s)	25, 445
HgaI	GACGC	2 cut(s)	88, 275
HhaI	GCGC	1 cut(s)	194
Hin1I	GRCGYC	2 cut(s)	267, 351
Hin1II	CATG	3 cut(s)	76, 142, 211
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	2 cut(s)	265, 355
HindII	GTYRAC	2 cut(s)	265, 355
HinfI	GANTC	1 cut(s)	422
HpaII	CCGG	2 cut(s)	25, 445
HphI	GGTGA	4 cut(s)	302, 325, 358, 385
Hpy166II	GTNNAC	4 cut(s)	52, 135, 265, 355
Hpy188I	TCNGA	2 cut(s)	222, 379
Hpy188III	TCNNGA	2 cut(s)	115, 121
Hpy8I	GTNNAC	4 cut(s)	52, 135, 265, 355
Hpy99I	CGWCG	6 cut(s)	50, 251, 266, 269, 353, 356
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4IV	ACGT	3 cut(s)	201, 351, 450
HpyCH4V	TGCA	1 cut(s)	387
HpyF10VI	GCNNNNNNNGC	2 cut(s)	204, 436
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	3 cut(s)	201, 351, 450
Hsp92I	GRCGYC	2 cut(s)	267, 351
Hsp92II	CATG	3 cut(s)	76, 142, 211
HspAI	GCGC	1 cut(s)	192
Ksp22I	TGATCA	1 cut(s)	117
KspI	CCGCGG	1 cut(s)	289
Kzo9I	GATC	6 cut(s)	117, 177, 297, 339, 374, 411
LmnI	GCTCC	2 cut(s)	288, 444
Lsp1109I	GCAGC	1 cut(s)	329
LweI	GCATC	1 cut(s)	396
MabI	ACCWGGT	1 cut(s)	66
MaeII	ACGT	3 cut(s)	201, 351, 450
MaeIII	GTNAC	3 cut(s)	364, 391, 451
MalI	GATC	6 cut(s)	119, 179, 299, 341, 376, 413
MboI	GATC	6 cut(s)	117, 177, 297, 339, 374, 411
MflI	RGATCY	3 cut(s)	177, 374, 411
MhlI	GDGCHC	5 cut(s)	64, 99, 157, 255, 406
MlsI	TGGCCA	1 cut(s)	212
MluNI	TGGCCA	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	3 cut(s)	68, 172, 402
MnlI	CCTC	9 cut(s)	53, 171, 251, 269, 314, 335, 341, 392, 425
Mox20I	TGGCCA	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	212
Msp20I	TGGCCA	1 cut(s)	212
MspA1I	CMGCKG	2 cut(s)	288, 398
MspI	CCGG	2 cut(s)	25, 445
MspR9I	CCNGG	3 cut(s)	68, 236, 427
MvaI	CCWGG	3 cut(s)	68, 236, 427
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	204, 436
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	6 cut(s)	117, 177, 297, 339, 374, 411
NlaIII	CATG	3 cut(s)	76, 142, 211
NlaIV	GGNNCC	4 cut(s)	62, 376, 403, 404
NmeAIII	GCCGAG	1 cut(s)	396
NmuCI	GTSAC	2 cut(s)	364, 391
PcsI	WCGNNNNNNNCGW	4 cut(s)	51, 261, 351, 360
PinAI	ACCGGT	1 cut(s)	24
PkrI	GCNGC	2 cut(s)	316, 319
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
PpuMI	RGGWCCY	1 cut(s)	238
Psp124BI	GAGCTC	2 cut(s)	157, 255
Psp5II	RGGWCCY	1 cut(s)	238
Psp6I	CCWGG	3 cut(s)	66, 234, 425
PspFI	CCCAGC	1 cut(s)	398
PspGI	CCWGG	3 cut(s)	66, 234, 425
PspN4I	GGNNCC	4 cut(s)	62, 376, 403, 404
PspOMI	GGGCCC	2 cut(s)	60, 402
PspPI	GGNCC	7 cut(s)	22, 60, 61, 135, 238, 402, 403
PspPPI	RGGWCCY	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	126
PsuI	RGATCY	3 cut(s)	177, 374, 411
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SacI	GAGCTC	2 cut(s)	157, 255
SacII	CCGCGG	1 cut(s)	289
SalI	GTCGAC	2 cut(s)	263, 353
SatI	GCNGC	2 cut(s)	315, 318
Sau3AI	GATC	6 cut(s)	117, 177, 297, 339, 374, 411
Sau96I	GGNCC	7 cut(s)	22, 60, 61, 135, 238, 402, 403
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	3 cut(s)	68, 236, 427
SduI	GDGCHC	5 cut(s)	64, 99, 157, 255, 406
SexAI	ACCWGGT	1 cut(s)	66
SfaNI	GCATC	1 cut(s)	396
Sfr303I	CCGCGG	1 cut(s)	289
SgrBI	CCGCGG	1 cut(s)	289
SgrDI	CGTCGACG	1 cut(s)	263
SinI	GGWCC	3 cut(s)	22, 135, 238
SsiI	CCGC	5 cut(s)	286, 288, 315, 396, 406
SstI	GAGCTC	2 cut(s)	157, 255
StyD4I	CCNGG	3 cut(s)	66, 234, 425
StyI	CCWWGG	2 cut(s)	138, 370
TaaI	ACNGT	1 cut(s)	86
TaiI	ACGT	3 cut(s)	204, 354, 453
TaqI	TCGA	3 cut(s)	157, 264, 354
TauI	GCSGC	1 cut(s)	317
TscAI	CASTG	1 cut(s)	137
TseFI	GTSAC	2 cut(s)	364, 391
TseI	GCWGC	1 cut(s)	317
Tsp45I	GTSAC	2 cut(s)	364, 391
TspGWI	ACGGA	1 cut(s)	172
TspRI	CASTG	1 cut(s)	137
VpaK11BI	GGWCC	3 cut(s)	22, 135, 238
XagI	CCTNNNNNAGG	1 cut(s)	233
XmiI	GTMKAC	2 cut(s)	264, 354
ZraI	GACGTC	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.