Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8326923.1

Orthogroup ID

OG0005141

Physical Location & Seq

Genomic Coordinates Forward (+)

543 .. 964

Gene Structure 422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8326923.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 422 bp

atgcacaaaagcacttcagcttcttccctcggccccggaggcctcgacctaacccaggccttcttcaagcccatccacggcgccgcccgtccctcctcctccaacggccagaccaagatctccgtcatcggcgccggcaacgtcggcatggccatcgcccagaccatcctcacccaggacctcgccgacgagctcgtcctcgtcgacgccatccccgacaagctccgcggcgagatgcttgacctccagcacgccgccgccttcctcccccgcaccaagatcaacgcttccgtcgactacgccgtcaccgccggctccgacctctgcattgtcaccgccggtgcccgccagatccacggcgagtccaggctgaacctgctgcagaggaacgtcgctctcttccgcaagatcatccccccgct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00270 ko00620 ko00640 ko01100 ko01110 ko01120 ko01130 ko04922 map00010 map00270 map00620 map00640 map01100 map01110 map01120 map01130 map04922

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

141

Amino Acids

14.82

Weight (kDa)

8.93

Isoelectric Point (pI)

25.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17260
fragaria_vesca	FvH4_5g00090
malus_domestica	MD16G1010900.v1.1
prunus_persica	Prupe.1G339800_v2.0.a1 Prupe.5G072700_v2.0.a1 Prupe.6G054700_v2.0.a1
pyrus_communis	pycom06g05170 pycom16g01070
rosa_chinensis	RchiOBHm_Chr4g0406091 RchiOBHm_Chr4g0445541 RchiOBHm_Chr7g0202841
rosa_laevigata	RLG00000003568 RLG00000005731
rosa_multiflora	Rmu_co8326923.1_g000001 Rmu_ssc0000253.1_g000006
rosa_roxburghii	Rroxscaffold_3G00254220 Rroxscaffold_5G00379710 Rroxscaffold_5G00386020
rosa_rugosa	Rorug04G0362400 Rorug07G0073400.1
rosa_samantha	Rh4AG423800 Rh4BG435800 Rh4CG450500 Rh4DG432100 Rh7AG201200 Rh7BG201500 Rh7CG212600 Rh7DG208200
rosa_wichuraiana	Rw4G036320 Rw7G017600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	194, 302
Acc36I	ACCTGC	1 cut(s)	384
AccB1I	GGYRCC	3 cut(s)	80, 131, 341
AccI	GTMKAC	2 cut(s)	204, 294
AccII	CGCG	1 cut(s)	228
AclWI	GGATC	1 cut(s)	346
AcoI	YGGCCR	2 cut(s)	106, 150
AcyI	GRCGYC	3 cut(s)	81, 132, 207
AfiI	CCNNNNNNNGG	3 cut(s)	55, 77, 175
AgsI	TTSAA	1 cut(s)	67
AjnI	CCWGG	3 cut(s)	54, 174, 365
AluBI	AGCT	3 cut(s)	20, 193, 223
AluI	AGCT	3 cut(s)	20, 193, 223
Alw21I	GWGCWC	1 cut(s)	195
AlwI	GGATC	1 cut(s)	346
AoxI	GGCC	5 cut(s)	31, 40, 57, 106, 150
ApeKI	GCWGC	1 cut(s)	379
AspLEI	GCGC	2 cut(s)	83, 134
AspS9I	GGNCC	2 cut(s)	32, 178
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	3 cut(s)	163, 298, 325
AvaII	GGWCC	1 cut(s)	178
BaeGI	GKGCMC	1 cut(s)	346
BalI	TGGCCA	1 cut(s)	152
BanI	GGYRCC	3 cut(s)	80, 131, 341
BanII	GRGCYC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	366
BccI	CCATC	4 cut(s)	80, 161, 173, 218
BceAI	ACGGC	4 cut(s)	94, 121, 287, 373
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	3 cut(s)	56, 176, 367
BcnI	CCSGG	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	380
BfoI	RGCGCY	2 cut(s)	84, 135
BfuAI	ACCTGC	1 cut(s)	384
BglI	GCCNNNNNGGC	1 cut(s)	39
BglII	AGATCT	1 cut(s)	117
BisI	GCNGC	5 cut(s)	84, 229, 255, 258, 380
BlsI	GCNGC	5 cut(s)	85, 230, 256, 259, 381
Bme1390I	CCNGG	4 cut(s)	36, 56, 176, 367
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	2 cut(s)	32, 178
BmiI	GGNNCC	5 cut(s)	34, 82, 133, 316, 343
BmrFI	CCNGG	4 cut(s)	36, 56, 176, 367
BmsI	GCATC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	36
BsaHI	GRCGYC	3 cut(s)	81, 132, 207
BsaJI	CCNNGG	7 cut(s)	28, 34, 54, 76, 174, 226, 355
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 77, 175
Bse118I	RCCGGY	3 cut(s)	134, 311, 338
BseBI	CCWGG	3 cut(s)	56, 176, 367
BseDI	CCNNGG	7 cut(s)	28, 34, 54, 76, 174, 226, 355
BseGI	GGATG	4 cut(s)	72, 165, 210, 411
BseLI	CCNNNNNNNGG	3 cut(s)	55, 77, 175
BseRI	GAGGAG	2 cut(s)	85, 88
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	1 cut(s)	366
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	5 cut(s)	33, 42, 59, 108, 152
BshNI	GGYRCC	3 cut(s)	80, 131, 341
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	4 cut(s)	36, 135, 312, 339
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	3 cut(s)	55, 77, 175
BsmFI	GGGAC	1 cut(s)	75
BsnI	GGCC	5 cut(s)	33, 42, 59, 108, 152
Bsp1286I	GDGCHC	2 cut(s)	195, 346
Bsp143I	GATC	4 cut(s)	117, 279, 351, 408
BspANI	GGCC	5 cut(s)	33, 42, 59, 108, 152
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	5 cut(s)	34, 82, 133, 316, 343
BspMAI	CTGCAG	1 cut(s)	384
BspMI	ACCTGC	1 cut(s)	384
BspPI	GGATC	1 cut(s)	346
BspT107I	GGYRCC	3 cut(s)	80, 131, 341
BsrFI	RCCGGY	3 cut(s)	134, 311, 338
BssAI	RCCGGY	3 cut(s)	134, 311, 338
BssECI	CCNNGG	7 cut(s)	28, 34, 54, 76, 174, 226, 355
BssMI	GATC	4 cut(s)	117, 279, 351, 408
BssNI	GRCGYC	3 cut(s)	81, 132, 207
Bst2UI	CCWGG	3 cut(s)	56, 176, 367
Bst6I	CTCTTC	1 cut(s)	404
BstACI	GRCGYC	3 cut(s)	81, 132, 207
BstC8I	GCNNGC	4 cut(s)	136, 252, 313, 346
BstDSI	CCRYGG	3 cut(s)	76, 226, 355
BstENI	CCTNNNNNAGG	2 cut(s)	53, 173
BstF5I	GGATG	4 cut(s)	72, 165, 210, 411
BstFNI	CGCG	1 cut(s)	228
BstH2I	RGCGCY	2 cut(s)	84, 135
BstHHI	GCGC	2 cut(s)	83, 134
BstKTI	GATC	4 cut(s)	120, 282, 354, 411
BstMBI	GATC	4 cut(s)	117, 279, 351, 408
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 144, 308, 376
BstNI	CCWGG	3 cut(s)	56, 176, 367
BstSCI	CCNGG	4 cut(s)	34, 54, 174, 365
BstSFI	CTRYAG	1 cut(s)	380
BstSLI	GKGCMC	1 cut(s)	346
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	366
BstX2I	RGATCY	2 cut(s)	117, 351
BstYI	RGATCY	2 cut(s)	117, 351
BsuRI	GGCC	5 cut(s)	33, 42, 59, 108, 152
BtgI	CCRYGG	3 cut(s)	76, 226, 355
BtgZI	GCGATG	1 cut(s)	139
BtsCI	GGATG	4 cut(s)	72, 165, 210, 411
BveI	ACCTGC	1 cut(s)	384
Cac8I	GCNNGC	4 cut(s)	136, 252, 313, 346
CfoI	GCGC	2 cut(s)	83, 134
Cfr10I	RCCGGY	3 cut(s)	134, 311, 338
Cfr13I	GGNCC	2 cut(s)	32, 178
Cfr42I	CCGCGG	1 cut(s)	229
CseI	GACGC	1 cut(s)	215
CviAII	CATG	1 cut(s)	148
DinI	GGCGCC	2 cut(s)	82, 133
DpnI	GATC	4 cut(s)	119, 281, 353, 410
DpnII	GATC	4 cut(s)	117, 279, 351, 408
DrdI	GACNNNNNNGTC	2 cut(s)	194, 302
DseDI	GACNNNNNNGTC	2 cut(s)	194, 302
EaeI	YGGCCR	2 cut(s)	106, 150
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Ecl136II	GAGCTC	1 cut(s)	193
Eco147I	AGGCCT	2 cut(s)	42, 59
Eco24I	GRGCYC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	193
EcoNI	CCTNNNNNAGG	2 cut(s)	53, 173
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRII	CCWGG	3 cut(s)	54, 174, 365
EcoT38I	GRGCYC	1 cut(s)	195
EgeI	GGCGCC	2 cut(s)	82, 133
EheI	GGCGCC	2 cut(s)	82, 133
FaeI	CATG	1 cut(s)	151
FaiI	YATR	1 cut(s)	149
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	1 cut(s)	147
FauI	CCCGC	2 cut(s)	278, 353
FblI	GTMKAC	2 cut(s)	204, 294
Fnu4HI	GCNGC	5 cut(s)	84, 229, 255, 258, 380
FokI	GGATG	4 cut(s)	59, 152, 197, 398
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	5 cut(s)	84, 229, 255, 258, 380
GlaI	GCGC	2 cut(s)	82, 133
GluI	GCNGC	5 cut(s)	84, 229, 255, 258, 380
GsuI	CTGGAG	1 cut(s)	230
HaeII	RGCGCY	2 cut(s)	84, 135
HaeIII	GGCC	5 cut(s)	33, 42, 59, 108, 152
HapII	CCGG	4 cut(s)	36, 135, 312, 339
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	2 cut(s)	83, 134
Hin1I	GRCGYC	3 cut(s)	81, 132, 207
Hin1II	CATG	1 cut(s)	151
Hin6I	GCGC	2 cut(s)	81, 132
HinP1I	GCGC	2 cut(s)	81, 132
HincII	GTYRAC	2 cut(s)	205, 295
HindII	GTYRAC	2 cut(s)	205, 295
HinfI	GANTC	1 cut(s)	362
HpaII	CCGG	4 cut(s)	36, 135, 312, 339
HphI	GGTGA	3 cut(s)	163, 298, 325
Hpy166II	GTNNAC	2 cut(s)	205, 295
Hpy188I	TCNGA	1 cut(s)	319
Hpy8I	GTNNAC	2 cut(s)	205, 295
Hpy99I	CGWCG	6 cut(s)	146, 191, 206, 209, 296, 395
HpyAV	CCTTC	2 cut(s)	70, 271
HpyCH4IV	ACGT	2 cut(s)	141, 390
HpyCH4V	TGCA	3 cut(s)	4, 327, 382
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 144, 308, 376
HpySE526I	ACGT	2 cut(s)	141, 390
Hsp92I	GRCGYC	3 cut(s)	81, 132, 207
Hsp92II	CATG	1 cut(s)	151
HspAI	GCGC	2 cut(s)	81, 132
KasI	GGCGCC	2 cut(s)	80, 131
KroI	GCCGGC	2 cut(s)	134, 311
KroNI	GCCGGC	2 cut(s)	136, 313
KspI	CCGCGG	1 cut(s)	229
Kzo9I	GATC	4 cut(s)	117, 279, 351, 408
LmnI	GCTCC	2 cut(s)	228, 320
Lsp1109I	GCAGC	1 cut(s)	366
LweI	GCATC	1 cut(s)	225
MaeII	ACGT	2 cut(s)	141, 390
MaeIII	GTNAC	2 cut(s)	304, 331
MalI	GATC	4 cut(s)	119, 281, 353, 410
MboI	GATC	4 cut(s)	117, 279, 351, 408
MboII	GAAGA	3 cut(s)	15, 55, 391
MflI	RGATCY	2 cut(s)	117, 351
MhlI	GDGCHC	2 cut(s)	195, 346
MlsI	TGGCCA	1 cut(s)	152
MluNI	TGGCCA	1 cut(s)	152
Mly113I	GGCGCC	2 cut(s)	81, 132
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	2 cut(s)	126, 342
Mox20I	TGGCCA	1 cut(s)	152
MroNI	GCCGGC	2 cut(s)	134, 311
MscI	TGGCCA	1 cut(s)	152
Msp20I	TGGCCA	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	4 cut(s)	36, 135, 312, 339
MspR9I	CCNGG	4 cut(s)	36, 56, 176, 367
MvaI	CCWGG	3 cut(s)	56, 176, 367
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	4 cut(s)	39, 144, 308, 376
NaeI	GCCGGC	2 cut(s)	136, 313
NarI	GGCGCC	2 cut(s)	81, 132
NciI	CCSGG	1 cut(s)	36
NdeII	GATC	4 cut(s)	117, 279, 351, 408
NgoMIV	GCCGGC	2 cut(s)	134, 311
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	5 cut(s)	34, 82, 133, 316, 343
NmeAIII	GCCGAG	1 cut(s)	9
NmuCI	GTSAC	2 cut(s)	304, 331
PceI	AGGCCT	2 cut(s)	42, 59
PcsI	WCGNNNNNNNCGW	4 cut(s)	201, 213, 291, 300
PdiI	GCCGGC	2 cut(s)	136, 313
PkrI	GCNGC	5 cut(s)	85, 230, 256, 259, 381
PleI	GAGTC	1 cut(s)	370
PluTI	GGCGCC	2 cut(s)	84, 135
PpsI	GAGTC	1 cut(s)	370
PpuMI	RGGWCCY	1 cut(s)	178
Psp124BI	GAGCTC	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	178
Psp6I	CCWGG	3 cut(s)	54, 174, 365
PspGI	CCWGG	3 cut(s)	54, 174, 365
PspN4I	GGNNCC	5 cut(s)	34, 82, 133, 316, 343
PspPI	GGNCC	2 cut(s)	32, 178
PspPPI	RGGWCCY	1 cut(s)	178
PstI	CTGCAG	1 cut(s)	384
PsuI	RGATCY	2 cut(s)	117, 351
SacI	GAGCTC	1 cut(s)	195
SacII	CCGCGG	1 cut(s)	229
SalI	GTCGAC	2 cut(s)	203, 293
SatI	GCNGC	5 cut(s)	84, 229, 255, 258, 380
Sau3AI	GATC	4 cut(s)	117, 279, 351, 408
Sau96I	GGNCC	2 cut(s)	32, 178
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	4 cut(s)	36, 56, 176, 367
SduI	GDGCHC	2 cut(s)	195, 346
SfaNI	GCATC	1 cut(s)	225
SfcI	CTRYAG	1 cut(s)	380
SfiI	GGCCNNNNNGGCC	1 cut(s)	39
SfoI	GGCGCC	2 cut(s)	82, 133
Sfr303I	CCGCGG	1 cut(s)	229
SgrAI	CRCCGGYG	1 cut(s)	338
SgrBI	CCGCGG	1 cut(s)	229
SgrDI	CGTCGACG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	178
SseBI	AGGCCT	2 cut(s)	42, 59
SspDI	GGCGCC	2 cut(s)	80, 131
SstI	GAGCTC	1 cut(s)	195
StuI	AGGCCT	2 cut(s)	42, 59
StyD4I	CCNGG	4 cut(s)	34, 54, 174, 365
TaiI	ACGT	2 cut(s)	144, 393
TaqI	TCGA	3 cut(s)	45, 204, 294
TauI	GCSGC	4 cut(s)	86, 231, 257, 260
TseFI	GTSAC	2 cut(s)	304, 331
TseI	GCWGC	1 cut(s)	379
Tsp45I	GTSAC	2 cut(s)	304, 331
TspGWI	ACGGA	2 cut(s)	112, 280
VpaK11BI	GGWCC	1 cut(s)	178
XagI	CCTNNNNNAGG	2 cut(s)	53, 173
XmiI	GTMKAC	2 cut(s)	204, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.