Prupe.6G184700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0014549
Physical Location & Seq
Forward (+)
19356818 .. 19358820
2003 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G184700.1

Sequence Viewer

Length: 1329 bp
ATGGCTCCACTCATGTACTTGAGTTTCAGAAAGGTACTTTTGCTTTCTCTTGTTAGTGTGTTCCTCTTTTCTACTCTTCTCCTTTCTGTCTACTCAGAGCCTCAACTTGAGAGCTCACAGTTTCTTGGTACAAGGAAAATGTCAGAGTTAGATAAAAATCAAGACCAGCCTAAGAAAATCAAGCCTGCCAATTCCCTTTCCTCCAAAAACCAAACCAAGCTCATCAAGCCCGCCTTGTCTTCCTCCAAGAACCAGACCAAGCTGATCAAATCTAGCCTATCCTCTAAAAACCAAACCAAGCTCCTCAAACCCAACCTCTCCTCCAAGAACCAAACCAAGCTTATCAAATCCAGTTCCAATTCCATCAAGACATCCTCATCCCCCACCAAGAATATTGAGCTCAAAAAGCTCAATTCCACATCAAAATCCTCCAATTCTGTCAAACCCAATTCAATTTCTAGTAAGAAAATCTCAGATCTAACCAAGCCAAGCACTCCCAAGAACAAAACAACCAAACCCACCACCACCACAAAACAATCCCAAAACCCACCAAAAACAGAGAAGAAACCCACCCAACAAAAACCCAAAAAGCCAATTGAGCCCAGCTGGATTGATCAAGAAGATGACACTGATTTTGTCTCAGATTTCACTGATTTGCCTGGAAAATTCCAGCAAACCTTGATTCCAGATTTAGAGAGAATCTCAACCACTTCAAAGATTTATCTCAACAAAGCCAACAAGCAAATGACAAACCAGTTCAAGCCCATTGTTGGCAACAAATATGCTGCCACAATTGCCTCCATAGTCTCCTGTGCCTTCCTCTTGATCCCTCTGCTCTTAGTCTCTCTCCTCTTCAACCGCATCAAAGCCTATTTCTCTCTCCAGAAGCTCTTGATCTTCATCCAAGTCTACCTCTCCATCTACTTCTCCATCCTCTGCCTCTCCTCCCTCGTCACTGGGCTCGAGCCCCTCAAGTTTTTCTACGCCACTTCGCAGTCCACCTACGTTTGCCTACAGGTGCTGCAGACGCTCGGCTACGTGCTGTATCTGTTGCTACTTTTGATGTATTTGATCCTGGTTTTCTCGACGGATTCTGGGCTGGGCTCGAAAATGTTGGGCCTGGGCCAGACCTTCGTGGGCTTTTCTGTTGGGCTTCATTACTATATGTCGGTGTTTCACAGAGCCGTGCTGAGACAGCCACCCAAGACCAACTGGAAGGTGCATGGGATTTACGCCACGTGTTATCTTGTGATTTGCCTGTTTGCTACAGCTGAGAGGAGGAAGAAGGCTTACTTGGAAGAGGGGGGTGAAGAGGGCAAGAAGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

443

Amino Acids

49.51

Weight (kDa)

9.89

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39840
malus_domestica MD01G1028100.v1.1 MD15G1325300.v1.1
prunus_persica Prupe.6G184700_v2.0.a1
pyrus_communis pycom01g05640
rosa_chinensis RchiOBHm_Chr2g0114541
rosa_laevigata RLG00000018113
rosa_multiflora Rmu_sc0000370.1_g000001 Rmu_sc0000371.1_g000011 Rmu_sc0027184.1_g000005
rosa_roxburghii Rroxscaffold_2G00130280
rosa_rugosa Rorug02G0190700
rosa_samantha Rh2AG248600 Rh2BG258200 Rh2CG252000 Rh2DG256700
rosa_wichuraiana Rw2G019330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 90, 909
AciI CCGC 2 cut(s) 231, 859
AclWI GGATC 2 cut(s) 820, 1066
AcsI RAATTY 1 cut(s) 665
AcvI CACGTG 1 cut(s) 1239
AfaI GTAC 3 cut(s) 17, 36, 130
AfiI CCNNNNNNNGG 1 cut(s) 770
AflIII ACRYGT 1 cut(s) 1238
AgsI TTSAA 4 cut(s) 453, 714, 760, 856
AjnI CCWGG 3 cut(s) 658, 1074, 1119
AjuI GAANNNNNNNTTGG 2 cut(s) 1277, 1309
Alw21I GWGCWC 2 cut(s) 116, 402
Alw26I GTCTC 4 cut(s) 643, 811, 847, 1186
AlwI GGATC 2 cut(s) 820, 1066
AlwNI CAGNNNCTG 1 cut(s) 1021
Ama87I CYCGRG 1 cut(s) 962
AoxI GGCC 2 cut(s) 1117, 1123
ApeKI GCWGC 2 cut(s) 785, 1021
ApoI RAATTY 1 cut(s) 665
ArsI GACNNNNNNTTYG 2 cut(s) 617, 649
AspS9I GGNCC 2 cut(s) 1117, 1123
AsuHPI GGTGA 1 cut(s) 1319
AvaI CYCGRG 1 cut(s) 962
BanII GRGCYC 6 cut(s) 116, 402, 603, 963, 969, 1106
BarI GAAGNNNNNNTAC 2 cut(s) 1274, 1306
BbrPI CACGTG 1 cut(s) 1239
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 2 cut(s) 116, 402
BbvI GCAGC 2 cut(s) 772, 1008
BccI CCATC 3 cut(s) 371, 926, 938
BceAI ACGGC 1 cut(s) 1169
BciT130I CCWGG 3 cut(s) 660, 1076, 1121
BclI TGATCA 2 cut(s) 264, 613
BcoDI GTCTC 4 cut(s) 643, 811, 847, 1186
BfaI CTAG 2 cut(s) 273, 459
BfmI CTRYAG 3 cut(s) 1013, 1022, 1266
BglII AGATCT 1 cut(s) 475
BisI GCNGC 2 cut(s) 786, 1022
BlsI GCNGC 2 cut(s) 787, 1023
Bme1390I CCNGG 3 cut(s) 660, 1076, 1121
BmeT110I CYCGRG 1 cut(s) 962
BmgT120I GGNCC 2 cut(s) 1117, 1123
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 3 cut(s) 660, 1076, 1121
BmrI ACTGGG 1 cut(s) 966
BmsI GCATC 1 cut(s) 870
BmuI ACTGGG 1 cut(s) 966
BpiI GAAGAC 1 cut(s) 231
BplI GAGNNNNNCTC 2 cut(s) 686, 718
BpmI CTGGAG 1 cut(s) 866
BpuEI CTTGAG 3 cut(s) 40, 128, 956
BsaAI YACGTR 2 cut(s) 1039, 1239
BsaBI GATNNNNATC 2 cut(s) 156, 899
BsaJI CCNNGG 1 cut(s) 1120
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 1 cut(s) 770
Bse1I ACTGG 4 cut(s) 351, 754, 961, 1217
Bse8I GATNNNNATC 2 cut(s) 156, 899
BseBI CCWGG 3 cut(s) 660, 1076, 1121
BseDI CCNNGG 1 cut(s) 1120
BseGI GGATG 4 cut(s) 371, 377, 900, 930
BseJI GATNNNNATC 2 cut(s) 156, 899
BseLI CCNNNNNNNGG 1 cut(s) 770
BseMII CTCAG 5 cut(s) 108, 486, 654, 1181, 1263
BseNI ACTGG 4 cut(s) 351, 754, 961, 1217
BseRI GAGGAG 5 cut(s) 293, 310, 839, 934, 1291
BseXI GCAGC 2 cut(s) 772, 1008
BseYI CCCAGC 2 cut(s) 602, 1099
BshFI GGCC 2 cut(s) 1119, 1125
BsiHKAI GWGCWC 2 cut(s) 116, 402
BsiHKCI CYCGRG 1 cut(s) 962
BslI CCNNNNNNNGG 1 cut(s) 770
BsmAI GTCTC 4 cut(s) 643, 811, 847, 1186
BsnI GGCC 2 cut(s) 1119, 1125
BsoBI CYCGRG 1 cut(s) 962
Bsp1286I GDGCHC 6 cut(s) 116, 402, 603, 963, 969, 1106
Bsp143I GATC 6 cut(s) 264, 475, 613, 825, 894, 1071
BspACI CCGC 2 cut(s) 231, 859
BspANI GGCC 2 cut(s) 1119, 1125
BspCNI CTCAG 5 cut(s) 107, 485, 653, 1182, 1264
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 1026
BspPI GGATC 2 cut(s) 820, 1066
BspQI GCTCTTC 1 cut(s) 1316
BsrI ACTGG 4 cut(s) 351, 754, 961, 1217
BssECI CCNNGG 1 cut(s) 1120
BssMI GATC 6 cut(s) 264, 475, 613, 825, 894, 1071
Bst2UI CCWGG 3 cut(s) 660, 1076, 1121
Bst4CI ACNGT 1 cut(s) 120
Bst6I CTCTTC 5 cut(s) 81, 857, 1293, 1305, 1316
BstBAI YACGTR 2 cut(s) 1039, 1239
BstC8I GCNNGC 2 cut(s) 186, 231
BstDEI CTNAG 7 cut(s) 94, 171, 472, 640, 838, 1190, 1272
BstF5I GGATG 4 cut(s) 371, 377, 900, 930
BstKTI GATC 6 cut(s) 267, 478, 616, 828, 897, 1074
BstMAI GTCTC 4 cut(s) 643, 811, 847, 1186
BstMBI GATC 6 cut(s) 264, 475, 613, 825, 894, 1071
BstMWI GCNNNNNNNGC 7 cut(s) 226, 406, 598, 794, 1027, 1195, 1323
BstNI CCWGG 3 cut(s) 660, 1076, 1121
BstSCI CCNGG 3 cut(s) 658, 1074, 1119
BstSFI CTRYAG 3 cut(s) 1013, 1022, 1266
BstV1I GCAGC 2 cut(s) 772, 1008
BstV2I GAAGAC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
BsuRI GGCC 2 cut(s) 1119, 1125
BtsCI GGATG 4 cut(s) 371, 377, 900, 930
BtsIMutI CAGTG 3 cut(s) 627, 648, 954
Cac8I GCNNGC 2 cut(s) 186, 231
CaiI CAGNNNCTG 1 cut(s) 1021
Cfr13I GGNCC 2 cut(s) 1117, 1123
CseI GACGC 1 cut(s) 1036
Csp6I GTAC 3 cut(s) 16, 35, 129
CviAII CATG 2 cut(s) 13, 1223
CviQI GTAC 3 cut(s) 16, 35, 129
DdeI CTNAG 7 cut(s) 94, 171, 472, 640, 838, 1190, 1272
DpnI GATC 6 cut(s) 266, 477, 615, 827, 896, 1073
DpnII GATC 6 cut(s) 264, 475, 613, 825, 894, 1071
Eam1104I CTCTTC 5 cut(s) 81, 857, 1293, 1305, 1316
EarI CTCTTC 5 cut(s) 81, 857, 1293, 1305, 1316
Ecl136II GAGCTC 2 cut(s) 114, 400
Eco24I GRGCYC 6 cut(s) 116, 402, 603, 963, 969, 1106
Eco53kI GAGCTC 2 cut(s) 114, 400
Eco72I CACGTG 1 cut(s) 1239
Eco88I CYCGRG 1 cut(s) 962
EcoICRI GAGCTC 2 cut(s) 114, 400
EcoRII CCWGG 3 cut(s) 658, 1074, 1119
EcoT38I GRGCYC 6 cut(s) 116, 402, 603, 963, 969, 1106
FaeI CATG 2 cut(s) 16, 1226
FaiI YATR 6 cut(s) 14, 783, 803, 1164, 1166, 1224
FalI AAGNNNNNCTT 4 cut(s) 218, 250, 1277, 1309
FatI CATG 2 cut(s) 12, 1222
FauI CCCGC 1 cut(s) 238
FbaI TGATCA 2 cut(s) 264, 613
FblI GTMKAC 2 cut(s) 90, 909
Fnu4HI GCNGC 2 cut(s) 786, 1022
FokI GGATG 4 cut(s) 358, 364, 887, 917
FriOI GRGCYC 6 cut(s) 116, 402, 603, 963, 969, 1106
Fsp4HI GCNGC 2 cut(s) 786, 1022
FspBI CTAG 2 cut(s) 273, 459
GluI GCNGC 2 cut(s) 786, 1022
GsaI CCCAGC 2 cut(s) 606, 1103
GsuI CTGGAG 1 cut(s) 866
HaeIII GGCC 2 cut(s) 1119, 1125
HgaI GACGC 1 cut(s) 1036
Hin1II CATG 2 cut(s) 16, 1226
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 3 cut(s) 682, 699, 1091
HphI GGTGA 1 cut(s) 1319
Hpy166II GTNNAC 3 cut(s) 91, 910, 999
Hpy188I TCNGA 5 cut(s) 29, 97, 145, 475, 643
Hpy188III TCNNGA 8 cut(s) 161, 367, 617, 686, 823, 883, 892, 1084
Hpy8I GTNNAC 3 cut(s) 91, 910, 999
Hpy99I CGWCG 1 cut(s) 1090
HpyAV CCTTC 4 cut(s) 826, 1141, 1210, 1279
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4IV ACGT 3 cut(s) 1005, 1038, 1238
HpyCH4V TGCA 2 cut(s) 1024, 1222
HpyF10VI GCNNNNNNNGC 7 cut(s) 226, 406, 598, 794, 1027, 1195, 1323
HpyF3I CTNAG 7 cut(s) 94, 171, 472, 640, 838, 1190, 1272
HpySE526I ACGT 3 cut(s) 1005, 1038, 1238
Hsp92II CATG 2 cut(s) 16, 1226
Ksp22I TGATCA 2 cut(s) 264, 613
Kzo9I GATC 6 cut(s) 264, 475, 613, 825, 894, 1071
LguI GCTCTTC 1 cut(s) 1316
LmnI GCTCC 2 cut(s) 10, 306
Lsp1109I GCAGC 2 cut(s) 772, 1008
LweI GCATC 1 cut(s) 870
MaeI CTAG 2 cut(s) 273, 459
MaeII ACGT 3 cut(s) 1005, 1038, 1238
MaeIII GTNAC 1 cut(s) 952
MalI GATC 6 cut(s) 266, 477, 615, 827, 896, 1073
MboI GATC 6 cut(s) 264, 475, 613, 825, 894, 1071
MboII GAAGA 9 cut(s) 68, 231, 574, 632, 844, 889, 1294, 1310, 1322
MfeI CAATTG 2 cut(s) 594, 792
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 6 cut(s) 116, 402, 603, 963, 969, 1106
MluCI AATT 9 cut(s) 190, 358, 412, 433, 448, 453, 594, 665, 792
MspA1I CMGCKG 2 cut(s) 606, 1271
MspR9I CCNGG 3 cut(s) 660, 1076, 1121
MunI CAATTG 2 cut(s) 594, 792
MvaI CCWGG 3 cut(s) 660, 1076, 1121
MwoI GCNNNNNNNGC 7 cut(s) 226, 406, 598, 794, 1027, 1195, 1323
NdeII GATC 6 cut(s) 264, 475, 613, 825, 894, 1071
NlaIII CATG 2 cut(s) 16, 1226
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 1011
NmuCI GTSAC 1 cut(s) 952
PaeR7I CTCGAG 1 cut(s) 962
PciSI GCTCTTC 1 cut(s) 1316
PfeI GAWTC 3 cut(s) 682, 699, 1091
PkrI GCNGC 2 cut(s) 787, 1023
PmaCI CACGTG 1 cut(s) 1239
PmlI CACGTG 1 cut(s) 1239
Ppu21I YACGTR 2 cut(s) 1039, 1239
Psp124BI GAGCTC 2 cut(s) 116, 402
Psp6I CCWGG 3 cut(s) 658, 1074, 1119
PspCI CACGTG 1 cut(s) 1239
PspFI CCCAGC 2 cut(s) 602, 1099
PspGI CCWGG 3 cut(s) 658, 1074, 1119
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 1117, 1123
PspXI VCTCGAGB 1 cut(s) 962
PstI CTGCAG 1 cut(s) 1026
PstNI CAGNNNCTG 1 cut(s) 1021
PsuI RGATCY 1 cut(s) 475
PvuII CAGCTG 2 cut(s) 606, 1271
RsaI GTAC 3 cut(s) 17, 36, 130
RsaNI GTAC 3 cut(s) 16, 35, 129
SacI GAGCTC 2 cut(s) 116, 402
SapI GCTCTTC 1 cut(s) 1316
SatI GCNGC 2 cut(s) 786, 1022
Sau3AI GATC 6 cut(s) 264, 475, 613, 825, 894, 1071
Sau96I GGNCC 2 cut(s) 1117, 1123
ScrFI CCNGG 3 cut(s) 660, 1076, 1121
SduI GDGCHC 6 cut(s) 116, 402, 603, 963, 969, 1106
SfaNI GCATC 1 cut(s) 870
SfcI CTRYAG 3 cut(s) 1013, 1022, 1266
Sfr274I CTCGAG 1 cut(s) 962
SlaI CTCGAG 1 cut(s) 962
SmlI CTYRAG 4 cut(s) 19, 107, 962, 971
SmoI CTYRAG 4 cut(s) 19, 107, 962, 971
Sse9I AATT 9 cut(s) 190, 358, 412, 433, 448, 453, 594, 665, 792
SsiI CCGC 2 cut(s) 231, 859
SspI AATATT 1 cut(s) 394
SspMI CTAG 2 cut(s) 273, 459
SstI GAGCTC 2 cut(s) 116, 402
StyD4I CCNGG 3 cut(s) 658, 1074, 1119
TaaI ACNGT 1 cut(s) 120
TaiI ACGT 3 cut(s) 1008, 1041, 1241
TaqI TCGA 3 cut(s) 963, 1085, 1106
TasI AATT 9 cut(s) 190, 358, 412, 433, 448, 453, 594, 665, 792
TatI WGTACW 1 cut(s) 15
TfiI GAWTC 3 cut(s) 682, 699, 1091
TscAI CASTG 3 cut(s) 634, 655, 961
TseFI GTSAC 1 cut(s) 952
TseI GCWGC 2 cut(s) 785, 1021
Tsp45I GTSAC 1 cut(s) 952
TspDTI ATGAA 2 cut(s) 889, 1145
TspGWI ACGGA 1 cut(s) 1103
TspRI CASTG 3 cut(s) 634, 655, 961
XapI RAATTY 1 cut(s) 665
XhoI CTCGAG 1 cut(s) 962
XmiI GTMKAC 2 cut(s) 90, 909
XspI CTAG 2 cut(s) 273, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.