Rroxscaffold_2G00130280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014549
Physical Location & Seq
Reverse (-)
66386739 .. 66388996
2258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00130280.1

Sequence Viewer

Length: 1224 bp
ATGGCTCCACTCATGTACTTCAAGTTCAGAAAGGTACTTTTGCTAGTTTCTCTTGTTGTCTTCCTCTTTTCTTCTACTCTGCTCCTTTGTGCCGCAGAAGAAGATGAGAAACTGCCTCGAATTCAGAGCTCATCACAGTTTTTGGCTTCAAGGAAAATGTTGGAATTAGATGAAGAAGTCCAGCCTAAGAAGATCAAGACCAAAACCACCACCTCAACTCCCCAATCCTCCAAAAACCAAACCAAGCTTATCAAACCCGCTTCATCATCCTCCAAAAACCAAACCAAGCTGCTCAAGCCACTTAAACCCAACCTATCATCCAAGAACCAAACCAAGCTCATCAAACCAAGCACCAATTCAACCAAGTCATCATCATCATCATCACCACCCAGTATCAAGATTGGCCTCAAGAAGCTCAATTCCACTTCCAAACCCTCAAACTCCACCAAACTCACTTCACTATCATCCAAGAAGACCTCAGATCTAGCCAAACTAACCTCCCCAAGAACAAAACAACCAAACCCACCACCACAAAACAACCTCAAACTCCCAAACCAATCCAAAAAACACAGAAAACCCCACCCCACAAAAACCCACCAAGAAACCAGTCCAACCCAGCTGGATCGAACAAGAAGACGACACCGACTTCGTCTCCGACTTCACAGACTTACCCGTTCAATTCCAACAGACTCTGATCCCAGACCTGGAAAAAATCTCAACCACATCAAAAATCTACCTCACCCAAGCCAACAAGCAAATGACCACCAGGTTCAAACCACTCGTCGGAAACAAATACGCCCCCACCATCGCTTCCATAGTCTCCTGCGCATTCCTACTTATTCCATTGCTCCTAGTCTCTCTCCTCTTCAACCGAATCAAAGCCTACTTTTCCCTCCAAAAGCTCCTCATCTTCATCCAAGTCTACCTCTCCATCTACTTCTCAATCCTCTGCCTCTCTTCCTTGGTCACTGGCCTCGAGCCCCTCAAGTTCTTCTACGCTACTTCGCAGTCCACCTACATCTGCCTCCAGGTTCTGCAGACTCTCGGCTACGTGCTCTATCTCCTCCTCCTCATCATGTACTTGATCCTGGTTTTCTCGACCGACTCCGGGCTGGGCTCGAAGATGTTGGGCCTGGCCCAGACTTTTCTCGGGTTCGCGGTTGGGCTGCATTACTACATGTCGGTGTTTCACAGGGCGGTGCTGCGGCAGCCGCCGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

407

Amino Acids

45.4

Weight (kDa)

11.16

Isoelectric Point (pI)

52.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39840
malus_domestica MD01G1028100.v1.1 MD15G1325300.v1.1
prunus_persica Prupe.6G184700_v2.0.a1
pyrus_communis pycom01g05640
rosa_chinensis RchiOBHm_Chr2g0114541
rosa_laevigata RLG00000018113
rosa_multiflora Rmu_sc0000370.1_g000001 Rmu_sc0000371.1_g000011 Rmu_sc0027184.1_g000005
rosa_roxburghii Rroxscaffold_2G00130280
rosa_rugosa Rorug02G0190700
rosa_samantha Rh2AG248600 Rh2BG258200 Rh2CG252000 Rh2DG256700
rosa_wichuraiana Rw2G019330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 827
AccI GTMKAC 1 cut(s) 922
AccII CGCG 1 cut(s) 1158
AciI CCGC 6 cut(s) 93, 258, 1158, 1197, 1205, 1212
AclWI GGATC 3 cut(s) 630, 689, 1079
AcsI RAATTY 1 cut(s) 120
AfaI GTAC 3 cut(s) 17, 36, 1080
AfiI CCNNNNNNNGG 3 cut(s) 704, 783, 1108
AflIII ACRYGT 1 cut(s) 1177
AgsI TTSAA 6 cut(s) 22, 150, 360, 678, 773, 869
AjnI CCWGG 5 cut(s) 703, 765, 1027, 1087, 1132
AjuI GAANNNNNNNTTGG 2 cut(s) 340, 372
AluBI AGCT 7 cut(s) 129, 247, 289, 337, 415, 619, 902
AluI AGCT 7 cut(s) 129, 247, 289, 337, 415, 619, 902
Alw21I GWGCWC 2 cut(s) 131, 1057
Alw26I GTCTC 3 cut(s) 656, 824, 860
AlwI GGATC 3 cut(s) 630, 689, 1079
AlwNI CAGNNNCTG 2 cut(s) 692, 1034
Ama87I CYCGRG 2 cut(s) 975, 1149
AoxI GGCC 4 cut(s) 403, 971, 1130, 1135
ApeKI GCWGC 4 cut(s) 289, 1166, 1202, 1208
ApoI RAATTY 1 cut(s) 120
ArsI GACNNNNNNTTYG 4 cut(s) 630, 662, 766, 798
AspLEI GCGC 1 cut(s) 828
AspS9I GGNCC 2 cut(s) 1130, 1136
AsuC2I CCSGG 1 cut(s) 1109
AsuHPI GGTGA 2 cut(s) 375, 731
AvaI CYCGRG 2 cut(s) 975, 1149
BanII GRGCYC 3 cut(s) 131, 982, 1119
BbsI GAAGAC 3 cut(s) 52, 479, 640
Bbv12I GWGCWC 2 cut(s) 131, 1057
BbvI GCAGC 4 cut(s) 276, 1153, 1189, 1220
BccI CCATC 2 cut(s) 813, 939
BciT130I CCWGG 5 cut(s) 705, 767, 1029, 1089, 1134
BcnI CCSGG 1 cut(s) 1109
BcoDI GTCTC 3 cut(s) 656, 824, 860
BfaI CTAG 3 cut(s) 44, 485, 852
BfmI CTRYAG 1 cut(s) 1035
BglII AGATCT 1 cut(s) 481
BisI GCNGC 7 cut(s) 93, 290, 1167, 1203, 1206, 1209, 1212
BlsI GCNGC 7 cut(s) 94, 291, 1168, 1204, 1207, 1210, 1213
Bme1390I CCNGG 6 cut(s) 705, 767, 1029, 1089, 1109, 1134
BmeT110I CYCGRG 2 cut(s) 975, 1149
BmgT120I GGNCC 2 cut(s) 1130, 1136
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 6 cut(s) 705, 767, 1029, 1089, 1109, 1134
BmrI ACTGGG 1 cut(s) 384
BmuI ACTGGG 1 cut(s) 384
BpiI GAAGAC 3 cut(s) 52, 479, 640
BpmI CTGGAG 1 cut(s) 1011
BpuEI CTTGAG 3 cut(s) 278, 392, 969
BpuMI CCSGG 1 cut(s) 1109
BsaAI YACGTR 1 cut(s) 1052
BsaJI CCNNGG 1 cut(s) 961
BsaXI ACNNNNNCTCC 4 cut(s) 202, 232, 636, 666
Bsc4I CCNNNNNNNGG 3 cut(s) 704, 783, 1108
Bse1I ACTGG 3 cut(s) 390, 606, 974
Bse3DI GCAATG 1 cut(s) 843
BseBI CCWGG 5 cut(s) 705, 767, 1029, 1089, 1134
BseDI CCNNGG 1 cut(s) 961
BseGI GGATG 4 cut(s) 266, 317, 464, 913
BseLI CCNNNNNNNGG 3 cut(s) 704, 783, 1108
BseMI GCAATG 1 cut(s) 843
BseMII CTCAG 1 cut(s) 492
BseNI ACTGG 3 cut(s) 390, 606, 974
BseRI GAGGAG 5 cut(s) 852, 894, 1053, 1056, 1059
BseXI GCAGC 4 cut(s) 276, 1153, 1189, 1220
BseYI CCCAGC 2 cut(s) 615, 1112
Bsh1236I CGCG 1 cut(s) 1158
Bsh1285I CGRYCG 1 cut(s) 1102
BshFI GGCC 4 cut(s) 405, 973, 1132, 1137
BsiEI CGRYCG 1 cut(s) 1102
BsiHKAI GWGCWC 2 cut(s) 131, 1057
BsiHKCI CYCGRG 2 cut(s) 975, 1149
BsiSI CCGG 1 cut(s) 1108
BslI CCNNNNNNNGG 3 cut(s) 704, 783, 1108
BsmAI GTCTC 3 cut(s) 656, 824, 860
BsmBI CGTCTC 1 cut(s) 656
BsmI GAATGC 1 cut(s) 828
BsnI GGCC 4 cut(s) 405, 973, 1132, 1137
BsoBI CYCGRG 2 cut(s) 975, 1149
Bsp1286I GDGCHC 4 cut(s) 131, 982, 1057, 1119
Bsp143I GATC 5 cut(s) 192, 481, 622, 694, 1084
BspACI CCGC 6 cut(s) 93, 258, 1158, 1197, 1205, 1212
BspANI GGCC 4 cut(s) 405, 973, 1132, 1137
BspCNI CTCAG 1 cut(s) 491
BspFNI CGCG 1 cut(s) 1158
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 1039
BspPI GGATC 3 cut(s) 630, 689, 1079
BsrDI GCAATG 1 cut(s) 843
BsrI ACTGG 3 cut(s) 390, 606, 974
BssECI CCNNGG 1 cut(s) 961
BssMI GATC 5 cut(s) 192, 481, 622, 694, 1084
BssT1I CCWWGG 1 cut(s) 961
Bst2UI CCWGG 5 cut(s) 705, 767, 1029, 1089, 1134
Bst4CI ACNGT 1 cut(s) 138
Bst6I CTCTTC 2 cut(s) 870, 962
BstBAI YACGTR 1 cut(s) 1052
BstDEI CTNAG 2 cut(s) 186, 478
BstF5I GGATG 4 cut(s) 266, 317, 464, 913
BstFNI CGCG 1 cut(s) 1158
BstHHI GCGC 1 cut(s) 828
BstKTI GATC 5 cut(s) 195, 484, 625, 697, 1087
BstMAI GTCTC 3 cut(s) 656, 824, 860
BstMBI GATC 5 cut(s) 192, 481, 622, 694, 1084
BstMCI CGRYCG 1 cut(s) 1102
BstMWI GCNNNNNNNGC 3 cut(s) 295, 1208, 1211
BstNI CCWGG 5 cut(s) 705, 767, 1029, 1089, 1134
BstNSI RCATGY 1 cut(s) 1181
BstSCI CCNGG 6 cut(s) 703, 765, 1027, 1087, 1107, 1132
BstSFI CTRYAG 1 cut(s) 1035
BstUI CGCG 1 cut(s) 1158
BstV1I GCAGC 4 cut(s) 276, 1153, 1189, 1220
BstV2I GAAGAC 3 cut(s) 52, 479, 640
BstX2I RGATCY 1 cut(s) 481
BstYI RGATCY 1 cut(s) 481
BsuRI GGCC 4 cut(s) 405, 973, 1132, 1137
BtgZI GCGATG 1 cut(s) 791
BtsCI GGATG 4 cut(s) 266, 317, 464, 913
BtsIMutI CAGTG 1 cut(s) 967
CaiI CAGNNNCTG 2 cut(s) 692, 1034
CfoI GCGC 1 cut(s) 828
Cfr13I GGNCC 2 cut(s) 1130, 1136
CsiI ACCWGGT 1 cut(s) 765
Csp6I GTAC 3 cut(s) 16, 35, 1079
CviAII CATG 3 cut(s) 13, 1076, 1178
CviQI GTAC 3 cut(s) 16, 35, 1079
DdeI CTNAG 2 cut(s) 186, 478
DpnI GATC 5 cut(s) 194, 483, 624, 696, 1086
DpnII GATC 5 cut(s) 192, 481, 622, 694, 1084
Eam1104I CTCTTC 2 cut(s) 870, 962
EarI CTCTTC 2 cut(s) 870, 962
Ecl136II GAGCTC 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 961
Eco24I GRGCYC 3 cut(s) 131, 982, 1119
Eco53kI GAGCTC 1 cut(s) 129
Eco88I CYCGRG 2 cut(s) 975, 1149
EcoICRI GAGCTC 1 cut(s) 129
EcoRI GAATTC 1 cut(s) 120
EcoRII CCWGG 5 cut(s) 703, 765, 1027, 1087, 1132
EcoT14I CCWWGG 1 cut(s) 961
EcoT38I GRGCYC 3 cut(s) 131, 982, 1119
ErhI CCWWGG 1 cut(s) 961
Esp3I CGTCTC 1 cut(s) 656
FaeI CATG 3 cut(s) 16, 1079, 1181
FaiI YATR 4 cut(s) 14, 816, 1077, 1179
FatI CATG 3 cut(s) 12, 1075, 1177
FauI CCCGC 1 cut(s) 265
FblI GTMKAC 1 cut(s) 922
Fnu4HI GCNGC 7 cut(s) 93, 290, 1167, 1203, 1206, 1209, 1212
FokI GGATG 4 cut(s) 253, 304, 451, 900
FriOI GRGCYC 3 cut(s) 131, 982, 1119
Fsp4HI GCNGC 7 cut(s) 93, 290, 1167, 1203, 1206, 1209, 1212
FspBI CTAG 3 cut(s) 44, 485, 852
FspI TGCGCA 1 cut(s) 827
GlaI GCGC 1 cut(s) 827
GluI GCNGC 7 cut(s) 93, 290, 1167, 1203, 1206, 1209, 1212
GsaI CCCAGC 2 cut(s) 619, 1116
GsuI CTGGAG 1 cut(s) 1011
HaeIII GGCC 4 cut(s) 405, 973, 1132, 1137
HapII CCGG 1 cut(s) 1108
HhaI GCGC 1 cut(s) 828
Hin1II CATG 3 cut(s) 16, 1079, 1181
Hin6I GCGC 1 cut(s) 826
HinP1I GCGC 1 cut(s) 826
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 4 cut(s) 689, 874, 1040, 1104
HpaII CCGG 1 cut(s) 1108
HphI GGTGA 2 cut(s) 375, 731
Hpy166II GTNNAC 2 cut(s) 923, 1012
Hpy188I TCNGA 6 cut(s) 29, 126, 481, 656, 694, 786
Hpy188III TCNNGA 4 cut(s) 196, 397, 409, 1097
Hpy8I GTNNAC 2 cut(s) 923, 1012
Hpy99I CGWCG 1 cut(s) 786
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4IV ACGT 1 cut(s) 1051
HpyCH4V TGCA 2 cut(s) 1037, 1169
HpyF10VI GCNNNNNNNGC 3 cut(s) 295, 1208, 1211
HpyF3I CTNAG 2 cut(s) 186, 478
HpySE526I ACGT 1 cut(s) 1051
Hsp92II CATG 3 cut(s) 16, 1079, 1181
HspAI GCGC 1 cut(s) 826
Kzo9I GATC 5 cut(s) 192, 481, 622, 694, 1084
LmnI GCTCC 4 cut(s) 10, 87, 853, 907
Lsp1109I GCAGC 4 cut(s) 276, 1153, 1189, 1220
MabI ACCWGGT 1 cut(s) 765
MaeI CTAG 3 cut(s) 44, 485, 852
MaeII ACGT 1 cut(s) 1051
MaeIII GTNAC 1 cut(s) 965
MalI GATC 5 cut(s) 194, 483, 624, 696, 1086
MboI GATC 5 cut(s) 192, 481, 622, 694, 1084
MflI RGATCY 1 cut(s) 481
MhlI GDGCHC 4 cut(s) 131, 982, 1057, 1119
MluCI AATT 5 cut(s) 120, 164, 355, 418, 678
MlyI GAGTC 3 cut(s) 683, 1034, 1098
MmeI TCCRAC 5 cut(s) 141, 635, 679, 707, 764
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 1182
MspA1I CMGCKG 1 cut(s) 619
MspI CCGG 1 cut(s) 1108
MspR9I CCNGG 6 cut(s) 705, 767, 1029, 1089, 1109, 1134
Mva1269I GAATGC 1 cut(s) 828
MvaI CCWGG 5 cut(s) 705, 767, 1029, 1089, 1134
MvnI CGCG 1 cut(s) 1158
MwoI GCNNNNNNNGC 3 cut(s) 295, 1208, 1211
NciI CCSGG 1 cut(s) 1109
NdeII GATC 5 cut(s) 192, 481, 622, 694, 1084
NlaIII CATG 3 cut(s) 16, 1079, 1181
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 1024
NmuCI GTSAC 1 cut(s) 965
NsbI TGCGCA 1 cut(s) 827
NspI RCATGY 1 cut(s) 1181
PaeR7I CTCGAG 1 cut(s) 975
PciI ACATGT 1 cut(s) 1177
PctI GAATGC 1 cut(s) 828
PfeI GAWTC 1 cut(s) 874
PflFI GACNNNGTC 1 cut(s) 648
PkrI GCNGC 7 cut(s) 94, 291, 1168, 1204, 1207, 1210, 1213
PleI GAGTC 3 cut(s) 683, 1034, 1098
PpsI GAGTC 3 cut(s) 683, 1034, 1098
Ppu21I YACGTR 1 cut(s) 1052
PscI ACATGT 1 cut(s) 1177
Psp124BI GAGCTC 1 cut(s) 131
Psp6I CCWGG 5 cut(s) 703, 765, 1027, 1087, 1132
PspFI CCCAGC 2 cut(s) 615, 1112
PspGI CCWGG 5 cut(s) 703, 765, 1027, 1087, 1132
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 1130, 1136
PspXI VCTCGAGB 1 cut(s) 975
PsrI GAACNNNNNNTAC 2 cut(s) 8, 40
PstI CTGCAG 1 cut(s) 1039
PstNI CAGNNNCTG 2 cut(s) 692, 1034
PsuI RGATCY 1 cut(s) 481
PsyI GACNNNGTC 1 cut(s) 648
PvuII CAGCTG 1 cut(s) 619
RsaI GTAC 3 cut(s) 17, 36, 1080
RsaNI GTAC 3 cut(s) 16, 35, 1079
RseI CAYNNNNRTG 1 cut(s) 1182
SacI GAGCTC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 7 cut(s) 93, 290, 1167, 1203, 1206, 1209, 1212
Sau3AI GATC 5 cut(s) 192, 481, 622, 694, 1084
Sau96I GGNCC 2 cut(s) 1130, 1136
SchI GAGTC 3 cut(s) 683, 1034, 1098
ScrFI CCNGG 6 cut(s) 705, 767, 1029, 1089, 1109, 1134
SduI GDGCHC 4 cut(s) 131, 982, 1057, 1119
SexAI ACCWGGT 1 cut(s) 765
SfcI CTRYAG 1 cut(s) 1035
Sfr274I CTCGAG 1 cut(s) 975
SlaI CTCGAG 1 cut(s) 975
SmiMI CAYNNNNRTG 1 cut(s) 1182
SmlI CTYRAG 4 cut(s) 293, 407, 975, 984
SmoI CTYRAG 4 cut(s) 293, 407, 975, 984
Sse9I AATT 5 cut(s) 120, 164, 355, 418, 678
SsiI CCGC 6 cut(s) 93, 258, 1158, 1197, 1205, 1212
SspMI CTAG 3 cut(s) 44, 485, 852
SstI GAGCTC 1 cut(s) 131
StyD4I CCNGG 6 cut(s) 703, 765, 1027, 1087, 1107, 1132
StyI CCWWGG 1 cut(s) 961
TaaI ACNGT 1 cut(s) 138
TaiI ACGT 1 cut(s) 1054
TaqI TCGA 5 cut(s) 118, 625, 976, 1098, 1119
TaqII GACCGA 1 cut(s) 1116
TasI AATT 5 cut(s) 120, 164, 355, 418, 678
TatI WGTACW 2 cut(s) 15, 1078
TauI GCSGC 3 cut(s) 95, 1208, 1214
TfiI GAWTC 1 cut(s) 874
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 1 cut(s) 974
TseFI GTSAC 1 cut(s) 965
TseI GCWGC 4 cut(s) 289, 1166, 1202, 1208
Tsp45I GTSAC 1 cut(s) 965
TspDTI ATGAA 3 cut(s) 186, 252, 902
TspRI CASTG 1 cut(s) 974
Tth111I GACNNNGTC 1 cut(s) 648
XapI RAATTY 1 cut(s) 120
XceI RCATGY 1 cut(s) 1181
XhoI CTCGAG 1 cut(s) 975
XmiI GTMKAC 1 cut(s) 922
XspI CTAG 3 cut(s) 44, 485, 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.