Domain of unknown function (DUF4378)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G02390 AT5G02390 AT5G02390 |
| fragaria_vesca | FvH4_6g13720 |
| malus_domestica | MD04G1128800.v1.1 MD12G1141400.v1.1 |
| prunus_persica | Prupe.6G254700_v2.0.a1 |
| pyrus_communis | pycom04g11700 pycom12g13630 |
| rosa_chinensis | RchiOBHm_Chr3g0466591 |
| rosa_laevigata | RLG00000024561 |
| rosa_multiflora | Rmu_sc0020778.1_g000002 |
| rosa_roxburghii | Rroxscaffold_6G00414320 |
| rosa_rugosa | Rorug03G0083000.1 Rorug03G0083100 |
| rosa_samantha | Rh3AG129900 Rh3BG151300 Rh3CG151000 Rh3DG151900 |
| rosa_wichuraiana | Rw3G012280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 2484 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 560, 2281 |
| AccI | GTMKAC | 2 cut(s) | 1037, 1545 |
| AciI | CCGC | 2 cut(s) | 161, 576 |
| AcoI | YGGCCR | 2 cut(s) | 1276, 2055 |
| AcsI | RAATTY | 5 cut(s) | 10, 1101, 1746, 2029, 2195 |
| AcuI | CTGAAG | 4 cut(s) | 903, 1818, 2028, 2516 |
| AdeI | CACNNNGTG | 1 cut(s) | 613 |
| AfaI | GTAC | 4 cut(s) | 1088, 1463, 2400, 2525 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 560, 754, 911, 1324, 2095, 2281 |
| AflIII | ACRYGT | 2 cut(s) | 712, 2157 |
| AgsI | TTSAA | 8 cut(s) | 366, 391, 460, 659, 1048, 1525, 2171, 2236 |
| AhlI | ACTAGT | 2 cut(s) | 557, 1481 |
| AjnI | CCWGG | 5 cut(s) | 432, 621, 823, 910, 1360 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1911, 1943 |
| Alw21I | GWGCWC | 3 cut(s) | 132, 1223, 1660 |
| Alw26I | GTCTC | 6 cut(s) | 432, 981, 1225, 1472, 2166, 2178 |
| Alw44I | GTGCAC | 1 cut(s) | 128 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1464 |
| Ama87I | CYCGRG | 2 cut(s) | 1577, 2252 |
| ApaI | GGGCCC | 1 cut(s) | 2512 |
| ApaLI | GTGCAC | 1 cut(s) | 128 |
| ApeKI | GCWGC | 9 cut(s) | 144, 158, 506, 509, 1031, 1488, 1558, 1756, 2313 |
| ApoI | RAATTY | 5 cut(s) | 10, 1101, 1746, 2029, 2195 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2639, 2671 |
| AseI | ATTAAT | 1 cut(s) | 1953 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 931 |
| AspLEI | GCGC | 1 cut(s) | 1419 |
| AsuC2I | CCSGG | 1 cut(s) | 177 |
| AsuHPI | GGTGA | 6 cut(s) | 89, 422, 476, 1070, 1542, 1817 |
| AsuII | TTCGAA | 1 cut(s) | 1322 |
| AvaI | CYCGRG | 2 cut(s) | 1577, 2252 |
| AvaII | GGWCC | 3 cut(s) | 1327, 2320, 2647 |
| AxyI | CCTNAGG | 1 cut(s) | 2091 |
| BaeGI | GKGCMC | 3 cut(s) | 132, 2487, 2512 |
| BalI | TGGCCA | 2 cut(s) | 1278, 2057 |
| BamHI | GGATCC | 2 cut(s) | 436, 2284 |
| BanI | GGYRCC | 1 cut(s) | 2484 |
| BanII | GRGCYC | 2 cut(s) | 1660, 2512 |
| BbsI | GAAGAC | 2 cut(s) | 1626, 2442 |
| Bbv12I | GWGCWC | 3 cut(s) | 132, 1223, 1660 |
| BbvI | GCAGC | 9 cut(s) | 131, 145, 493, 496, 1043, 1500, 1570, 1768, 2300 |
| BccI | CCATC | 9 cut(s) | 46, 756, 1081, 1091, 1673, 2033, 2398, 2588, 2689 |
| BceAI | ACGGC | 1 cut(s) | 2152 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 173, 207, 212, 246, 716, 750 |
| BciT130I | CCWGG | 5 cut(s) | 434, 623, 825, 912, 1362 |
| BciVI | GTATCC | 1 cut(s) | 2107 |
| BclI | TGATCA | 3 cut(s) | 2365, 2388, 2548 |
| BcnI | CCSGG | 1 cut(s) | 177 |
| BcoDI | GTCTC | 6 cut(s) | 432, 981, 1225, 1472, 2166, 2178 |
| BcuI | ACTAGT | 2 cut(s) | 557, 1481 |
| BfmI | CTRYAG | 3 cut(s) | 282, 1734, 1770 |
| BfoI | RGCGCY | 1 cut(s) | 1420 |
| BfuI | GTATCC | 1 cut(s) | 2107 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2482 |
| BglII | AGATCT | 1 cut(s) | 1183 |
| BisI | GCNGC | 9 cut(s) | 145, 159, 507, 510, 1032, 1489, 1559, 1757, 2314 |
| BlsI | GCNGC | 9 cut(s) | 146, 160, 508, 511, 1033, 1490, 1560, 1758, 2315 |
| Bme1390I | CCNGG | 6 cut(s) | 177, 434, 623, 825, 912, 1362 |
| Bme18I | GGWCC | 3 cut(s) | 1327, 2320, 2647 |
| BmeT110I | CYCGRG | 2 cut(s) | 1577, 2252 |
| BmiI | GGNNCC | 7 cut(s) | 74, 420, 438, 2286, 2486, 2510, 2706 |
| BmrFI | CCNGG | 6 cut(s) | 177, 434, 623, 825, 912, 1362 |
| BpiI | GAAGAC | 2 cut(s) | 1626, 2442 |
| BpmI | CTGGAG | 3 cut(s) | 345, 785, 1674 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2684 |
| Bpu14I | TTCGAA | 1 cut(s) | 1322 |
| BpuEI | CTTGAG | 5 cut(s) | 935, 1385, 2548, 2554, 2663 |
| BpuMI | CCSGG | 1 cut(s) | 177 |
| Bsa29I | ATCGAT | 3 cut(s) | 404, 1076, 1311 |
| BsaBI | GATNNNNATC | 1 cut(s) | 633 |
| BsaI | GGTCTC | 1 cut(s) | 981 |
| BsaJI | CCNNGG | 1 cut(s) | 2251 |
| BsaWI | WCCGGW | 2 cut(s) | 357, 1855 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 560, 754, 911, 1324, 2095, 2281 |
| Bse118I | RCCGGY | 1 cut(s) | 2278 |
| Bse1I | ACTGG | 2 cut(s) | 107, 2115 |
| Bse21I | CCTNAGG | 1 cut(s) | 2091 |
| Bse3DI | GCAATG | 1 cut(s) | 1341 |
| Bse8I | GATNNNNATC | 1 cut(s) | 633 |
| BseBI | CCWGG | 5 cut(s) | 434, 623, 825, 912, 1362 |
| BseCI | ATCGAT | 3 cut(s) | 404, 1076, 1311 |
| BseDI | CCNNGG | 1 cut(s) | 2251 |
| BseGI | GGATG | 7 cut(s) | 539, 1255, 1684, 1728, 2463, 2607, 2700 |
| BseJI | GATNNNNATC | 1 cut(s) | 633 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 560, 754, 911, 1324, 2095, 2281 |
| BseMI | GCAATG | 1 cut(s) | 1341 |
| BseMII | CTCAG | 4 cut(s) | 927, 1506, 2613, 2675 |
| BseNI | ACTGG | 2 cut(s) | 107, 2115 |
| BseRI | GAGGAG | 1 cut(s) | 1643 |
| BseSI | GKGCMC | 3 cut(s) | 132, 2487, 2512 |
| BseXI | GCAGC | 9 cut(s) | 131, 145, 493, 496, 1043, 1500, 1570, 1768, 2300 |
| BseYI | CCCAGC | 1 cut(s) | 840 |
| BshNI | GGYRCC | 1 cut(s) | 2484 |
| BshVI | ATCGAT | 3 cut(s) | 404, 1076, 1311 |
| BsiHKAI | GWGCWC | 3 cut(s) | 132, 1223, 1660 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1577, 2252 |
| BsiSI | CCGG | 4 cut(s) | 177, 358, 1856, 2279 |
| BslFI | GGGAC | 4 cut(s) | 360, 2233, 2269, 2421 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 560, 754, 911, 1324, 2095, 2281 |
| BsmAI | GTCTC | 6 cut(s) | 432, 981, 1225, 1472, 2166, 2178 |
| BsmBI | CGTCTC | 1 cut(s) | 432 |
| BsmFI | GGGAC | 4 cut(s) | 360, 2233, 2269, 2421 |
| BsmI | GAATGC | 2 cut(s) | 52, 2263 |
| Bso31I | GGTCTC | 1 cut(s) | 981 |
| BsoBI | CYCGRG | 2 cut(s) | 1577, 2252 |
| Bsp119I | TTCGAA | 1 cut(s) | 1322 |
| Bsp120I | GGGCCC | 1 cut(s) | 2508 |
| Bsp1286I | GDGCHC | 5 cut(s) | 132, 1223, 1660, 2487, 2512 |
| BspACI | CCGC | 2 cut(s) | 161, 576 |
| BspCNI | CTCAG | 4 cut(s) | 928, 1507, 2614, 2676 |
| BspDI | ATCGAT | 3 cut(s) | 404, 1076, 1311 |
| BspHI | TCATGA | 1 cut(s) | 87 |
| BspLI | GGNNCC | 7 cut(s) | 74, 420, 438, 2286, 2486, 2510, 2706 |
| BspQI | GCTCTTC | 2 cut(s) | 1423, 2064 |
| BspT104I | TTCGAA | 1 cut(s) | 1322 |
| BspT107I | GGYRCC | 1 cut(s) | 2484 |
| BspTNI | GGTCTC | 1 cut(s) | 981 |
| BsrDI | GCAATG | 1 cut(s) | 1341 |
| BsrFI | RCCGGY | 1 cut(s) | 2278 |
| BsrI | ACTGG | 2 cut(s) | 107, 2115 |
| BssAI | RCCGGY | 1 cut(s) | 2278 |
| BssECI | CCNNGG | 1 cut(s) | 2251 |
| Bst2UI | CCWGG | 5 cut(s) | 434, 623, 825, 912, 1362 |
| Bst6I | CTCTTC | 3 cut(s) | 922, 1423, 2064 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 320, 691, 869 |
| BstBI | TTCGAA | 1 cut(s) | 1322 |
| BstC8I | GCNNGC | 6 cut(s) | 156, 514, 861, 1690, 2141, 2478 |
| BstDEI | CTNAG | 7 cut(s) | 234, 936, 1187, 1515, 2091, 2622, 2684 |
| BstF5I | GGATG | 7 cut(s) | 539, 1255, 1684, 1728, 2463, 2607, 2700 |
| BstH2I | RGCGCY | 1 cut(s) | 1420 |
| BstHHI | GCGC | 1 cut(s) | 1419 |
| BstMAI | GTCTC | 6 cut(s) | 432, 981, 1225, 1472, 2166, 2178 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 72, 136, 320, 691, 869, 946, 1689, 2482 |
| BstNI | CCWGG | 5 cut(s) | 434, 623, 825, 912, 1362 |
| BstNSI | RCATGY | 4 cut(s) | 158, 716, 1208, 2161 |
| BstSCI | CCNGG | 6 cut(s) | 175, 432, 621, 823, 910, 1360 |
| BstSFI | CTRYAG | 3 cut(s) | 282, 1734, 1770 |
| BstSLI | GKGCMC | 3 cut(s) | 132, 2487, 2512 |
| BstV1I | GCAGC | 9 cut(s) | 131, 145, 493, 496, 1043, 1500, 1570, 1768, 2300 |
| BstV2I | GAAGAC | 2 cut(s) | 1626, 2442 |
| BstX2I | RGATCY | 5 cut(s) | 172, 436, 1183, 1963, 2284 |
| BstYI | RGATCY | 5 cut(s) | 172, 436, 1183, 1963, 2284 |
| Bsu15I | ATCGAT | 3 cut(s) | 404, 1076, 1311 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2091 |
| BsuI | GTATCC | 1 cut(s) | 2107 |
| BsuTUI | ATCGAT | 3 cut(s) | 404, 1076, 1311 |
| BtgZI | GCGATG | 1 cut(s) | 125 |
| BtsCI | GGATG | 7 cut(s) | 539, 1255, 1684, 1728, 2463, 2607, 2700 |
| BtsI | GCAGTG | 1 cut(s) | 527 |
| BtsIMutI | CAGTG | 7 cut(s) | 100, 527, 874, 1096, 1909, 2110, 2135 |
| Cac8I | GCNNGC | 6 cut(s) | 156, 514, 861, 1690, 2141, 2478 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1464 |
| CciI | TCATGA | 1 cut(s) | 87 |
| CfoI | GCGC | 1 cut(s) | 1419 |
| Cfr10I | RCCGGY | 1 cut(s) | 2278 |
| ClaI | ATCGAT | 3 cut(s) | 404, 1076, 1311 |
| CseI | GACGC | 2 cut(s) | 737, 1023 |
| CsiI | ACCWGGT | 1 cut(s) | 621 |
| Csp6I | GTAC | 4 cut(s) | 1087, 1462, 2399, 2524 |
| CviQI | GTAC | 4 cut(s) | 1087, 1462, 2399, 2524 |
| DdeI | CTNAG | 7 cut(s) | 234, 936, 1187, 1515, 2091, 2622, 2684 |
| DraI | TTTAAA | 1 cut(s) | 1180 |
| DraIII | CACNNNGTG | 1 cut(s) | 613 |
| EaeI | YGGCCR | 2 cut(s) | 1276, 2055 |
| Eam1104I | CTCTTC | 3 cut(s) | 922, 1423, 2064 |
| EarI | CTCTTC | 3 cut(s) | 922, 1423, 2064 |
| Ecl136II | GAGCTC | 1 cut(s) | 1658 |
| Eco24I | GRGCYC | 2 cut(s) | 1660, 2512 |
| Eco31I | GGTCTC | 1 cut(s) | 981 |
| Eco32I | GATATC | 1 cut(s) | 333 |
| Eco47I | GGWCC | 3 cut(s) | 1327, 2320, 2647 |
| Eco53kI | GAGCTC | 1 cut(s) | 1658 |
| Eco57I | CTGAAG | 4 cut(s) | 903, 1818, 2028, 2516 |
| Eco81I | CCTNAGG | 1 cut(s) | 2091 |
| Eco88I | CYCGRG | 2 cut(s) | 1577, 2252 |
| EcoICRI | GAGCTC | 1 cut(s) | 1658 |
| EcoO109I | RGGNCCY | 4 cut(s) | 73, 1327, 2509, 2647 |
| EcoRI | GAATTC | 1 cut(s) | 1101 |
| EcoRII | CCWGG | 5 cut(s) | 432, 621, 823, 910, 1360 |
| EcoRV | GATATC | 1 cut(s) | 333 |
| EcoT22I | ATGCAT | 2 cut(s) | 411, 1450 |
| EcoT38I | GRGCYC | 2 cut(s) | 1660, 2512 |
| Esp3I | CGTCTC | 1 cut(s) | 432 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1420, 1452 |
| FaqI | GGGAC | 4 cut(s) | 360, 2233, 2269, 2421 |
| FauI | CCCGC | 1 cut(s) | 154 |
| FauNDI | CATATG | 2 cut(s) | 1236, 2296 |
| FbaI | TGATCA | 3 cut(s) | 2365, 2388, 2548 |
| FblI | GTMKAC | 2 cut(s) | 1037, 1545 |
| Fnu4HI | GCNGC | 9 cut(s) | 145, 159, 507, 510, 1032, 1489, 1559, 1757, 2314 |
| FokI | GGATG | 7 cut(s) | 526, 1262, 1691, 1715, 2450, 2614, 2707 |
| FriOI | GRGCYC | 2 cut(s) | 1660, 2512 |
| Fsp4HI | GCNGC | 9 cut(s) | 145, 159, 507, 510, 1032, 1489, 1559, 1757, 2314 |
| GlaI | GCGC | 1 cut(s) | 1418 |
| GluI | GCNGC | 9 cut(s) | 145, 159, 507, 510, 1032, 1489, 1559, 1757, 2314 |
| GsaI | CCCAGC | 1 cut(s) | 844 |
| GsuI | CTGGAG | 3 cut(s) | 345, 785, 1674 |
| HaeII | RGCGCY | 1 cut(s) | 1420 |
| HapII | CCGG | 4 cut(s) | 177, 358, 1856, 2279 |
| HgaI | GACGC | 2 cut(s) | 737, 1023 |
| HhaI | GCGC | 1 cut(s) | 1419 |
| Hin6I | GCGC | 1 cut(s) | 1417 |
| HinP1I | GCGC | 1 cut(s) | 1417 |
| HindIII | AAGCTT | 1 cut(s) | 1283 |
| HpaII | CCGG | 4 cut(s) | 177, 358, 1856, 2279 |
| HphI | GGTGA | 6 cut(s) | 89, 422, 476, 1070, 1542, 1817 |
| Hpy166II | GTNNAC | 8 cut(s) | 130, 484, 790, 1038, 1061, 1546, 2101, 2108 |
| Hpy8I | GTNNAC | 8 cut(s) | 130, 484, 790, 1038, 1061, 1546, 2101, 2108 |
| Hpy99I | CGWCG | 1 cut(s) | 731 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 72, 136, 320, 691, 869, 946, 1689, 2482 |
| HpyF3I | CTNAG | 7 cut(s) | 234, 936, 1187, 1515, 2091, 2622, 2684 |
| HspAI | GCGC | 1 cut(s) | 1417 |
| Ksp22I | TGATCA | 3 cut(s) | 2365, 2388, 2548 |
| LguI | GCTCTTC | 2 cut(s) | 1423, 2064 |
| LmnI | GCTCC | 6 cut(s) | 1300, 1655, 1663, 1771, 2012, 2221 |
| Lsp1109I | GCAGC | 9 cut(s) | 131, 145, 493, 496, 1043, 1500, 1570, 1768, 2300 |
| MabI | ACCWGGT | 1 cut(s) | 621 |
| MaeIII | GTNAC | 3 cut(s) | 1370, 2132, 2459 |
| MfeI | CAATTG | 4 cut(s) | 386, 441, 571, 1122 |
| MflI | RGATCY | 5 cut(s) | 172, 436, 1183, 1963, 2284 |
| MhlI | GDGCHC | 5 cut(s) | 132, 1223, 1660, 2487, 2512 |
| MlsI | TGGCCA | 2 cut(s) | 1278, 2057 |
| MluNI | TGGCCA | 2 cut(s) | 1278, 2057 |
| MlyI | GAGTC | 5 cut(s) | 905, 1541, 1640, 1952, 2255 |
| MmeI | TCCRAC | 3 cut(s) | 148, 1685, 2199 |
| Mox20I | TGGCCA | 2 cut(s) | 1278, 2057 |
| Mph1103I | ATGCAT | 2 cut(s) | 411, 1450 |
| MroXI | GAANNNNTTC | 1 cut(s) | 931 |
| MscI | TGGCCA | 2 cut(s) | 1278, 2057 |
| MseI | TTAA | 9 cut(s) | 884, 1170, 1179, 1529, 1605, 1811, 1953, 2027, 2199 |
| MslI | CAYNNNNRTG | 2 cut(s) | 960, 2268 |
| Msp20I | TGGCCA | 2 cut(s) | 1278, 2057 |
| MspI | CCGG | 4 cut(s) | 177, 358, 1856, 2279 |
| MspR9I | CCNGG | 6 cut(s) | 177, 434, 623, 825, 912, 1362 |
| MunI | CAATTG | 4 cut(s) | 386, 441, 571, 1122 |
| Mva1269I | GAATGC | 2 cut(s) | 52, 2263 |
| MvaI | CCWGG | 5 cut(s) | 434, 623, 825, 912, 1362 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 72, 136, 320, 691, 869, 946, 1689, 2482 |
| NciI | CCSGG | 1 cut(s) | 177 |
| NdeI | CATATG | 2 cut(s) | 1236, 2296 |
| NlaIV | GGNNCC | 7 cut(s) | 74, 420, 438, 2286, 2486, 2510, 2706 |
| NmuCI | GTSAC | 1 cut(s) | 2132 |
| NsiI | ATGCAT | 2 cut(s) | 411, 1450 |
| NspI | RCATGY | 4 cut(s) | 158, 716, 1208, 2161 |
| NspV | TTCGAA | 1 cut(s) | 1322 |
| PaeI | GCATGC | 1 cut(s) | 158 |
| PagI | TCATGA | 1 cut(s) | 87 |
| PciI | ACATGT | 2 cut(s) | 712, 2157 |
| PciSI | GCTCTTC | 2 cut(s) | 1423, 2064 |
| PctI | GAATGC | 2 cut(s) | 52, 2263 |
| PdmI | GAANNNNTTC | 1 cut(s) | 931 |
| PfeI | GAWTC | 6 cut(s) | 401, 524, 634, 1267, 1862, 2618 |
| PflFI | GACNNNGTC | 1 cut(s) | 2446 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 560, 2281 |
| PfoI | TCCNGGA | 2 cut(s) | 175, 1360 |
| PkrI | GCNGC | 9 cut(s) | 146, 160, 508, 511, 1033, 1490, 1560, 1758, 2315 |
| PleI | GAGTC | 5 cut(s) | 904, 1541, 1639, 1951, 2254 |
| PpsI | GAGTC | 5 cut(s) | 904, 1541, 1639, 1951, 2254 |
| PpuMI | RGGWCCY | 2 cut(s) | 1327, 2647 |
| PscI | ACATGT | 2 cut(s) | 712, 2157 |
| PshBI | ATTAAT | 1 cut(s) | 1953 |
| Psp124BI | GAGCTC | 1 cut(s) | 1660 |
| Psp5II | RGGWCCY | 2 cut(s) | 1327, 2647 |
| Psp6I | CCWGG | 5 cut(s) | 432, 621, 823, 910, 1360 |
| PspFI | CCCAGC | 1 cut(s) | 840 |
| PspGI | CCWGG | 5 cut(s) | 432, 621, 823, 910, 1360 |
| PspN4I | GGNNCC | 7 cut(s) | 74, 420, 438, 2286, 2486, 2510, 2706 |
| PspOMI | GGGCCC | 1 cut(s) | 2508 |
| PspPPI | RGGWCCY | 2 cut(s) | 1327, 2647 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1464 |
| PsuI | RGATCY | 5 cut(s) | 172, 436, 1183, 1963, 2284 |
| PsyI | GACNNNGTC | 1 cut(s) | 2446 |
| RsaI | GTAC | 4 cut(s) | 1088, 1463, 2400, 2525 |
| RsaNI | GTAC | 4 cut(s) | 1087, 1462, 2399, 2524 |
| RseI | CAYNNNNRTG | 2 cut(s) | 960, 2268 |
| SacI | GAGCTC | 1 cut(s) | 1660 |
| SapI | GCTCTTC | 2 cut(s) | 1423, 2064 |
| SaqAI | TTAA | 9 cut(s) | 884, 1170, 1179, 1529, 1605, 1811, 1953, 2027, 2199 |
| SatI | GCNGC | 9 cut(s) | 145, 159, 507, 510, 1032, 1489, 1559, 1757, 2314 |
| SchI | GAGTC | 5 cut(s) | 905, 1541, 1640, 1952, 2255 |
| ScrFI | CCNGG | 6 cut(s) | 177, 434, 623, 825, 912, 1362 |
| SduI | GDGCHC | 5 cut(s) | 132, 1223, 1660, 2487, 2512 |
| SexAI | ACCWGGT | 1 cut(s) | 621 |
| SfcI | CTRYAG | 3 cut(s) | 282, 1734, 1770 |
| SfuI | TTCGAA | 1 cut(s) | 1322 |
| SinI | GGWCC | 3 cut(s) | 1327, 2320, 2647 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 960, 2268 |
| SmlI | CTYRAG | 5 cut(s) | 950, 1400, 2527, 2533, 2642 |
| SmoI | CTYRAG | 5 cut(s) | 950, 1400, 2527, 2533, 2642 |
| SpeI | ACTAGT | 2 cut(s) | 557, 1481 |
| SphI | GCATGC | 1 cut(s) | 158 |
| SsiI | CCGC | 2 cut(s) | 161, 576 |
| SstI | GAGCTC | 1 cut(s) | 1660 |
| StyD4I | CCNGG | 6 cut(s) | 175, 432, 621, 823, 910, 1360 |
| TatI | WGTACW | 1 cut(s) | 1086 |
| TfiI | GAWTC | 6 cut(s) | 401, 524, 634, 1267, 1862, 2618 |
| Tru1I | TTAA | 9 cut(s) | 884, 1170, 1179, 1529, 1605, 1811, 1953, 2027, 2199 |
| Tru9I | TTAA | 9 cut(s) | 884, 1170, 1179, 1529, 1605, 1811, 1953, 2027, 2199 |
| TscAI | CASTG | 7 cut(s) | 107, 534, 874, 1096, 1909, 2110, 2135 |
| TseFI | GTSAC | 1 cut(s) | 2132 |
| TseI | GCWGC | 9 cut(s) | 144, 158, 506, 509, 1031, 1488, 1558, 1756, 2313 |
| Tsp45I | GTSAC | 1 cut(s) | 2132 |
| TspGWI | ACGGA | 1 cut(s) | 331 |
| TspRI | CASTG | 7 cut(s) | 107, 534, 874, 1096, 1909, 2110, 2135 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2446 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 560, 2281 |
| VneI | GTGCAC | 1 cut(s) | 128 |
| VpaK11BI | GGWCC | 3 cut(s) | 1327, 2320, 2647 |
| VspI | ATTAAT | 1 cut(s) | 1953 |
| XapI | RAATTY | 5 cut(s) | 10, 1101, 1746, 2029, 2195 |
| XbaI | TCTAGA | 2 cut(s) | 1723, 2033 |
| XceI | RCATGY | 4 cut(s) | 158, 716, 1208, 2161 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1159 |
| XmiI | GTMKAC | 2 cut(s) | 1037, 1545 |
| XmnI | GAANNNNTTC | 1 cut(s) | 931 |
| Zsp2I | ATGCAT | 2 cut(s) | 411, 1450 |