Domain of unknown function (DUF4378)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G02390 AT5G02390 AT5G02390 |
| fragaria_vesca | FvH4_6g13720 |
| malus_domestica | MD04G1128800.v1.1 MD12G1141400.v1.1 |
| prunus_persica | Prupe.6G254700_v2.0.a1 |
| pyrus_communis | pycom04g11700 pycom12g13630 |
| rosa_chinensis | RchiOBHm_Chr3g0466591 |
| rosa_laevigata | RLG00000024561 |
| rosa_multiflora | Rmu_sc0020778.1_g000002 |
| rosa_roxburghii | Rroxscaffold_6G00414320 |
| rosa_rugosa | Rorug03G0083000.1 Rorug03G0083100 |
| rosa_samantha | Rh3AG129900 Rh3BG151300 Rh3CG151000 Rh3DG151900 |
| rosa_wichuraiana | Rw3G012280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2378 |
| Acc16I | TGCGCA | 1 cut(s) | 1671 |
| Acc36I | ACCTGC | 1 cut(s) | 1122 |
| Acc65I | GGTACC | 1 cut(s) | 1125 |
| AccB1I | GGYRCC | 1 cut(s) | 1125 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 689 |
| AccI | GTMKAC | 2 cut(s) | 276, 719 |
| AccIII | TCCGGA | 1 cut(s) | 1242 |
| AciI | CCGC | 2 cut(s) | 1129, 2138 |
| AclWI | GGATC | 9 cut(s) | 173, 186, 314, 339, 530, 861, 1787, 2129, 2183 |
| AcoI | YGGCCR | 2 cut(s) | 746, 2052 |
| AcsI | RAATTY | 4 cut(s) | 525, 1269, 1571, 1706 |
| AcuI | CTGAAG | 4 cut(s) | 87, 276, 1887, 2378 |
| AcvI | CACGTG | 1 cut(s) | 877 |
| AfaI | GTAC | 6 cut(s) | 120, 268, 402, 1127, 1808, 2387 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 52, 469, 626, 689, 994 |
| AflIII | ACRYGT | 2 cut(s) | 430, 904 |
| AgeI | ACCGGT | 1 cut(s) | 1352 |
| AhlI | ACTAGT | 4 cut(s) | 269, 517, 1148, 1781 |
| AleI | CACNNNNGTG | 1 cut(s) | 1808 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2337, 2369 |
| Alw21I | GWGCWC | 2 cut(s) | 1235, 1539 |
| Alw26I | GTCTC | 4 cut(s) | 895, 1538, 1673, 2392 |
| Alw44I | GTGCAC | 1 cut(s) | 1535 |
| AlwI | GGATC | 9 cut(s) | 173, 186, 314, 339, 530, 861, 1787, 2129, 2183 |
| Aor13HI | TCCGGA | 1 cut(s) | 1242 |
| AoxI | GGCC | 6 cut(s) | 42, 746, 921, 2052, 2304, 2370 |
| ApaI | GGGCCC | 1 cut(s) | 2374 |
| ApaLI | GTGCAC | 1 cut(s) | 1535 |
| ApeKI | GCWGC | 1 cut(s) | 2175 |
| ApoI | RAATTY | 4 cut(s) | 525, 1269, 1571, 1706 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2501, 2533 |
| AseI | ATTAAT | 1 cut(s) | 498 |
| AsiGI | ACCGGT | 1 cut(s) | 1352 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1855 |
| Asp718I | GGTACC | 1 cut(s) | 1125 |
| AspLEI | GCGC | 3 cut(s) | 587, 1672, 2168 |
| AspS9I | GGNCC | 8 cut(s) | 43, 102, 460, 997, 1901, 2370, 2371, 2509 |
| AsuC2I | CCSGG | 3 cut(s) | 341, 540, 627 |
| AsuHPI | GGTGA | 4 cut(s) | 833, 1212, 1227, 2231 |
| AsuII | TTCGAA | 2 cut(s) | 159, 992 |
| AvaII | GGWCC | 5 cut(s) | 102, 460, 997, 1901, 2509 |
| BaeGI | GKGCMC | 2 cut(s) | 1539, 2374 |
| BamHI | GGATCC | 1 cut(s) | 178 |
| BanI | GGYRCC | 1 cut(s) | 1125 |
| BanII | GRGCYC | 2 cut(s) | 1235, 2374 |
| BauI | CACGAG | 1 cut(s) | 2006 |
| BbrPI | CACGTG | 1 cut(s) | 877 |
| BbsI | GAAGAC | 1 cut(s) | 2304 |
| Bbv12I | GWGCWC | 2 cut(s) | 1235, 1539 |
| BbvI | GCAGC | 1 cut(s) | 2162 |
| BceAI | ACGGC | 2 cut(s) | 761, 2319 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 438, 472 |
| BciVI | GTATCC | 1 cut(s) | 1969 |
| BclI | TGATCA | 4 cut(s) | 766, 1048, 2227, 2410 |
| BcnI | CCSGG | 3 cut(s) | 341, 540, 627 |
| BcoDI | GTCTC | 4 cut(s) | 895, 1538, 1673, 2392 |
| BcuI | ACTAGT | 4 cut(s) | 269, 517, 1148, 1781 |
| BfmI | CTRYAG | 2 cut(s) | 1413, 1449 |
| BfuAI | ACCTGC | 1 cut(s) | 1122 |
| BfuI | GTATCC | 1 cut(s) | 1969 |
| BisI | GCNGC | 1 cut(s) | 2176 |
| BlsI | GCNGC | 1 cut(s) | 2177 |
| BmcAI | AGTACT | 1 cut(s) | 268 |
| Bme1390I | CCNGG | 3 cut(s) | 341, 540, 627 |
| Bme18I | GGWCC | 5 cut(s) | 102, 460, 997, 1901, 2509 |
| BmgT120I | GGNCC | 8 cut(s) | 43, 102, 460, 997, 1901, 2370, 2371, 2509 |
| BmiI | GGNNCC | 5 cut(s) | 180, 999, 1127, 1935, 2372 |
| BmrFI | CCNGG | 3 cut(s) | 341, 540, 627 |
| BmrI | ACTGGG | 3 cut(s) | 798, 1734, 1855 |
| BmsI | GCATC | 4 cut(s) | 1099, 1121, 1471, 1936 |
| BmuI | ACTGGG | 3 cut(s) | 798, 1734, 1855 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2022 |
| BpiI | GAAGAC | 1 cut(s) | 2304 |
| BpmI | CTGGAG | 2 cut(s) | 336, 1302 |
| Bpu14I | TTCGAA | 2 cut(s) | 159, 992 |
| BpuEI | CTTGAG | 3 cut(s) | 91, 2410, 2416 |
| BpuMI | CCSGG | 3 cut(s) | 341, 540, 627 |
| Bsa29I | ATCGAT | 2 cut(s) | 146, 758 |
| BsaAI | YACGTR | 3 cut(s) | 877, 1806, 1810 |
| BsaI | GGTCTC | 1 cut(s) | 2392 |
| BsaJI | CCNNGG | 4 cut(s) | 27, 603, 915, 2113 |
| BsaWI | WCCGGW | 5 cut(s) | 99, 829, 1242, 1352, 2401 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 52, 469, 626, 689, 994 |
| Bse118I | RCCGGY | 1 cut(s) | 1352 |
| Bse1I | ACTGG | 5 cut(s) | 319, 804, 1729, 1861, 2141 |
| Bse3DI | GCAATG | 2 cut(s) | 1004, 1337 |
| BseAI | TCCGGA | 1 cut(s) | 1242 |
| BseCI | ATCGAT | 2 cut(s) | 146, 758 |
| BseDI | CCNNGG | 4 cut(s) | 27, 603, 915, 2113 |
| BseGI | GGATG | 6 cut(s) | 23, 367, 924, 1366, 1483, 2469 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 52, 469, 626, 689, 994 |
| BseMI | GCAATG | 2 cut(s) | 1004, 1337 |
| BseMII | CTCAG | 3 cut(s) | 1749, 1838, 1971 |
| BseNI | ACTGG | 5 cut(s) | 319, 804, 1729, 1861, 2141 |
| BseRI | GAGGAG | 2 cut(s) | 537, 1323 |
| BseSI | GKGCMC | 2 cut(s) | 1539, 2374 |
| BseXI | GCAGC | 1 cut(s) | 2162 |
| BseYI | CCCAGC | 1 cut(s) | 737 |
| BsgI | GTGCAG | 2 cut(s) | 309, 2220 |
| BshFI | GGCC | 6 cut(s) | 44, 748, 923, 2054, 2306, 2372 |
| BshNI | GGYRCC | 1 cut(s) | 1125 |
| BshTI | ACCGGT | 1 cut(s) | 1352 |
| BshVI | ATCGAT | 2 cut(s) | 146, 758 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1235, 1539 |
| BsiSI | CCGG | 8 cut(s) | 100, 341, 539, 627, 830, 1243, 1353, 2402 |
| BsiWI | CGTACG | 1 cut(s) | 1806 |
| BslFI | GGGAC | 4 cut(s) | 323, 1607, 1742, 2131 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 52, 469, 626, 689, 994 |
| BsmAI | GTCTC | 4 cut(s) | 895, 1538, 1673, 2392 |
| BsmFI | GGGAC | 4 cut(s) | 323, 1607, 1742, 2131 |
| BsnI | GGCC | 6 cut(s) | 44, 748, 923, 2054, 2306, 2372 |
| Bso31I | GGTCTC | 1 cut(s) | 2392 |
| Bsp119I | TTCGAA | 2 cut(s) | 159, 992 |
| Bsp120I | GGGCCC | 1 cut(s) | 2370 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1235, 1539, 2374 |
| Bsp13I | TCCGGA | 1 cut(s) | 1242 |
| Bsp19I | CCATGG | 1 cut(s) | 915 |
| BspACI | CCGC | 2 cut(s) | 1129, 2138 |
| BspANI | GGCC | 6 cut(s) | 44, 748, 923, 2054, 2306, 2372 |
| BspCNI | CTCAG | 3 cut(s) | 1750, 1839, 1972 |
| BspDI | ATCGAT | 2 cut(s) | 146, 758 |
| BspEI | TCCGGA | 1 cut(s) | 1242 |
| BspLI | GGNNCC | 5 cut(s) | 180, 999, 1127, 1935, 2372 |
| BspMI | ACCTGC | 1 cut(s) | 1122 |
| BspPI | GGATC | 9 cut(s) | 173, 186, 314, 339, 530, 861, 1787, 2129, 2183 |
| BspQI | GCTCTTC | 1 cut(s) | 253 |
| BspT104I | TTCGAA | 2 cut(s) | 159, 992 |
| BspT107I | GGYRCC | 1 cut(s) | 1125 |
| BspTNI | GGTCTC | 1 cut(s) | 2392 |
| BsrDI | GCAATG | 2 cut(s) | 1004, 1337 |
| BsrFI | RCCGGY | 1 cut(s) | 1352 |
| BsrI | ACTGG | 5 cut(s) | 319, 804, 1729, 1861, 2141 |
| BssAI | RCCGGY | 1 cut(s) | 1352 |
| BssECI | CCNNGG | 4 cut(s) | 27, 603, 915, 2113 |
| BssSI | CACGAG | 1 cut(s) | 2006 |
| BssT1I | CCWWGG | 4 cut(s) | 27, 603, 915, 2113 |
| Bst2BI | CACGAG | 1 cut(s) | 2006 |
| Bst4CI | ACNGT | 5 cut(s) | 328, 400, 1598, 1733, 2297 |
| Bst6I | CTCTTC | 2 cut(s) | 77, 253 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 62 |
| BstBAI | YACGTR | 3 cut(s) | 877, 1806, 1810 |
| BstBI | TTCGAA | 2 cut(s) | 159, 992 |
| BstC8I | GCNNGC | 4 cut(s) | 1175, 1372, 2127, 2340 |
| BstDEI | CTNAG | 9 cut(s) | 78, 371, 660, 857, 1554, 1689, 1758, 1847, 1980 |
| BstDSI | CCRYGG | 1 cut(s) | 915 |
| BstF5I | GGATG | 6 cut(s) | 23, 367, 924, 1366, 1483, 2469 |
| BstHHI | GCGC | 3 cut(s) | 587, 1672, 2168 |
| BstMAI | GTCTC | 4 cut(s) | 895, 1538, 1673, 2392 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 62, 584, 1380, 2172 |
| BstNSI | RCATGY | 3 cut(s) | 434, 908, 2129 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2022 |
| BstSCI | CCNGG | 3 cut(s) | 339, 538, 625 |
| BstSFI | CTRYAG | 2 cut(s) | 1413, 1449 |
| BstSLI | GKGCMC | 2 cut(s) | 1539, 2374 |
| BstV1I | GCAGC | 1 cut(s) | 2162 |
| BstV2I | GAAGAC | 1 cut(s) | 2304 |
| BstX2I | RGATCY | 4 cut(s) | 178, 319, 853, 1792 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1261 |
| BstYI | RGATCY | 4 cut(s) | 178, 319, 853, 1792 |
| Bsu15I | ATCGAT | 2 cut(s) | 146, 758 |
| BsuI | GTATCC | 1 cut(s) | 1969 |
| BsuRI | GGCC | 6 cut(s) | 44, 748, 923, 2054, 2306, 2372 |
| BsuTUI | ATCGAT | 2 cut(s) | 146, 758 |
| BtgI | CCRYGG | 1 cut(s) | 915 |
| BtsCI | GGATG | 6 cut(s) | 23, 367, 924, 1366, 1483, 2469 |
| BtsI | GCAGTG | 1 cut(s) | 1972 |
| BtsIMutI | CAGTG | 3 cut(s) | 333, 1738, 1972 |
| BveI | ACCTGC | 1 cut(s) | 1122 |
| Cac8I | GCNNGC | 4 cut(s) | 1175, 1372, 2127, 2340 |
| CfoI | GCGC | 3 cut(s) | 587, 1672, 2168 |
| Cfr10I | RCCGGY | 1 cut(s) | 1352 |
| Cfr13I | GGNCC | 8 cut(s) | 43, 102, 460, 997, 1901, 2370, 2371, 2509 |
| ClaI | ATCGAT | 2 cut(s) | 146, 758 |
| CseI | GACGC | 1 cut(s) | 455 |
| Csp6I | GTAC | 6 cut(s) | 119, 267, 401, 1126, 1807, 2386 |
| CspAI | ACCGGT | 1 cut(s) | 1352 |
| CviQI | GTAC | 6 cut(s) | 119, 267, 401, 1126, 1807, 2386 |
| DdeI | CTNAG | 9 cut(s) | 78, 371, 660, 857, 1554, 1689, 1758, 1847, 1980 |
| EaeI | YGGCCR | 2 cut(s) | 746, 2052 |
| Eam1104I | CTCTTC | 2 cut(s) | 77, 253 |
| EarI | CTCTTC | 2 cut(s) | 77, 253 |
| EciI | GGCGGA | 1 cut(s) | 2127 |
| Ecl136II | GAGCTC | 1 cut(s) | 1233 |
| Eco130I | CCWWGG | 4 cut(s) | 27, 603, 915, 2113 |
| Eco24I | GRGCYC | 2 cut(s) | 1235, 2374 |
| Eco31I | GGTCTC | 1 cut(s) | 2392 |
| Eco47I | GGWCC | 5 cut(s) | 102, 460, 997, 1901, 2509 |
| Eco53kI | GAGCTC | 1 cut(s) | 1233 |
| Eco57I | CTGAAG | 4 cut(s) | 87, 276, 1887, 2378 |
| Eco72I | CACGTG | 1 cut(s) | 877 |
| EcoICRI | GAGCTC | 1 cut(s) | 1233 |
| EcoO109I | RGGNCCY | 3 cut(s) | 997, 2371, 2509 |
| EcoT14I | CCWWGG | 4 cut(s) | 27, 603, 915, 2113 |
| EcoT22I | ATGCAT | 1 cut(s) | 1114 |
| EcoT38I | GRGCYC | 2 cut(s) | 1235, 2374 |
| ErhI | CCWWGG | 4 cut(s) | 27, 603, 915, 2113 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 235, 267 |
| FaqI | GGGAC | 4 cut(s) | 323, 1607, 1742, 2131 |
| FauNDI | CATATG | 1 cut(s) | 1183 |
| FbaI | TGATCA | 4 cut(s) | 766, 1048, 2227, 2410 |
| FblI | GTMKAC | 2 cut(s) | 276, 719 |
| Fnu4HI | GCNGC | 1 cut(s) | 2176 |
| FokI | GGATG | 6 cut(s) | 10, 374, 911, 1373, 1490, 2476 |
| FriOI | GRGCYC | 2 cut(s) | 1235, 2374 |
| Fsp4HI | GCNGC | 1 cut(s) | 2176 |
| FspI | TGCGCA | 1 cut(s) | 1671 |
| GlaI | GCGC | 3 cut(s) | 586, 1671, 2167 |
| GluI | GCNGC | 1 cut(s) | 2176 |
| GsaI | CCCAGC | 1 cut(s) | 741 |
| GsuI | CTGGAG | 2 cut(s) | 336, 1302 |
| HaeIII | GGCC | 6 cut(s) | 44, 748, 923, 2054, 2306, 2372 |
| HapII | CCGG | 8 cut(s) | 100, 341, 539, 627, 830, 1243, 1353, 2402 |
| HgaI | GACGC | 1 cut(s) | 455 |
| HhaI | GCGC | 3 cut(s) | 587, 1672, 2168 |
| Hin6I | GCGC | 3 cut(s) | 585, 1670, 2166 |
| HinP1I | GCGC | 3 cut(s) | 585, 1670, 2166 |
| HincII | GTYRAC | 1 cut(s) | 277 |
| HindII | GTYRAC | 1 cut(s) | 277 |
| HpaII | CCGG | 8 cut(s) | 100, 341, 539, 627, 830, 1243, 1353, 2402 |
| HphI | GGTGA | 4 cut(s) | 833, 1212, 1227, 2231 |
| Hpy166II | GTNNAC | 6 cut(s) | 277, 505, 720, 893, 1394, 1537 |
| Hpy188I | TCNGA | 9 cut(s) | 256, 652, 771, 1305, 1423, 1792, 1867, 2358, 2485 |
| Hpy8I | GTNNAC | 6 cut(s) | 277, 505, 720, 893, 1394, 1537 |
| HpyCH4III | ACNGT | 5 cut(s) | 328, 400, 1598, 1733, 2297 |
| HpyCH4IV | ACGT | 4 cut(s) | 876, 1805, 1809, 2406 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 62, 584, 1380, 2172 |
| HpyF3I | CTNAG | 9 cut(s) | 78, 371, 660, 857, 1554, 1689, 1758, 1847, 1980 |
| HpySE526I | ACGT | 4 cut(s) | 876, 1805, 1809, 2406 |
| HspAI | GCGC | 3 cut(s) | 585, 1670, 2166 |
| Kpn2I | TCCGGA | 1 cut(s) | 1242 |
| KpnI | GGTACC | 1 cut(s) | 1129 |
| Ksp22I | TGATCA | 4 cut(s) | 766, 1048, 2227, 2410 |
| LguI | GCTCTTC | 1 cut(s) | 253 |
| LmnI | GCTCC | 3 cut(s) | 1255, 1405, 1933 |
| Lsp1109I | GCAGC | 1 cut(s) | 2162 |
| LweI | GCATC | 4 cut(s) | 1099, 1121, 1471, 1936 |
| MaeII | ACGT | 4 cut(s) | 876, 1805, 1809, 2406 |
| MaeIII | GTNAC | 7 cut(s) | 310, 411, 513, 1501, 1636, 2321, 2435 |
| MfeI | CAATTG | 3 cut(s) | 128, 183, 283 |
| MflI | RGATCY | 4 cut(s) | 178, 319, 853, 1792 |
| MhlI | GDGCHC | 3 cut(s) | 1235, 1539, 2374 |
| MlyI | GAGTC | 4 cut(s) | 25, 620, 823, 2032 |
| MmeI | TCCRAC | 4 cut(s) | 44, 2061, 2324, 2441 |
| Mph1103I | ATGCAT | 1 cut(s) | 1114 |
| MroI | TCCGGA | 1 cut(s) | 1242 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1855 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1808, 1896, 2130 |
| MspI | CCGG | 8 cut(s) | 100, 341, 539, 627, 830, 1243, 1353, 2402 |
| MspR9I | CCNGG | 3 cut(s) | 341, 540, 627 |
| MunI | CAATTG | 3 cut(s) | 128, 183, 283 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 62, 584, 1380, 2172 |
| NciI | CCSGG | 3 cut(s) | 341, 540, 627 |
| NcoI | CCATGG | 1 cut(s) | 915 |
| NdeI | CATATG | 1 cut(s) | 1183 |
| NlaIV | GGNNCC | 5 cut(s) | 180, 999, 1127, 1935, 2372 |
| NmeAIII | GCCGAG | 1 cut(s) | 2080 |
| NsbI | TGCGCA | 1 cut(s) | 1671 |
| NsiI | ATGCAT | 1 cut(s) | 1114 |
| NspI | RCATGY | 3 cut(s) | 434, 908, 2129 |
| NspV | TTCGAA | 2 cut(s) | 159, 992 |
| OliI | CACNNNNGTG | 1 cut(s) | 1808 |
| PaeI | GCATGC | 1 cut(s) | 2129 |
| PciI | ACATGT | 2 cut(s) | 430, 904 |
| PciSI | GCTCTTC | 1 cut(s) | 253 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1855 |
| Pfl23II | CGTACG | 1 cut(s) | 1806 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 689 |
| PinAI | ACCGGT | 1 cut(s) | 1352 |
| PkrI | GCNGC | 1 cut(s) | 2177 |
| PleI | GAGTC | 4 cut(s) | 24, 619, 822, 2031 |
| PmaCI | CACGTG | 1 cut(s) | 877 |
| PmlI | CACGTG | 1 cut(s) | 877 |
| PpsI | GAGTC | 4 cut(s) | 24, 619, 822, 2031 |
| Ppu21I | YACGTR | 3 cut(s) | 877, 1806, 1810 |
| PpuMI | RGGWCCY | 2 cut(s) | 997, 2509 |
| PscI | ACATGT | 2 cut(s) | 430, 904 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2022 |
| PshBI | ATTAAT | 1 cut(s) | 498 |
| PsiI | TTATAA | 1 cut(s) | 2378 |
| Psp124BI | GAGCTC | 1 cut(s) | 1235 |
| Psp5II | RGGWCCY | 2 cut(s) | 997, 2509 |
| PspCI | CACGTG | 1 cut(s) | 877 |
| PspFI | CCCAGC | 1 cut(s) | 737 |
| PspLI | CGTACG | 1 cut(s) | 1806 |
| PspN4I | GGNNCC | 5 cut(s) | 180, 999, 1127, 1935, 2372 |
| PspOMI | GGGCCC | 1 cut(s) | 2370 |
| PspPI | GGNCC | 8 cut(s) | 43, 102, 460, 997, 1901, 2370, 2371, 2509 |
| PspPPI | RGGWCCY | 2 cut(s) | 997, 2509 |
| PsuI | RGATCY | 4 cut(s) | 178, 319, 853, 1792 |
| RsaI | GTAC | 6 cut(s) | 120, 268, 402, 1127, 1808, 2387 |
| RsaNI | GTAC | 6 cut(s) | 119, 267, 401, 1126, 1807, 2386 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1808, 1896, 2130 |
| SacI | GAGCTC | 1 cut(s) | 1235 |
| SalI | GTCGAC | 1 cut(s) | 275 |
| SapI | GCTCTTC | 1 cut(s) | 253 |
| SatI | GCNGC | 1 cut(s) | 2176 |
| Sau96I | GGNCC | 8 cut(s) | 43, 102, 460, 997, 1901, 2370, 2371, 2509 |
| ScaI | AGTACT | 1 cut(s) | 268 |
| SchI | GAGTC | 4 cut(s) | 25, 620, 823, 2032 |
| ScrFI | CCNGG | 3 cut(s) | 341, 540, 627 |
| SduI | GDGCHC | 3 cut(s) | 1235, 1539, 2374 |
| SfaNI | GCATC | 4 cut(s) | 1099, 1121, 1471, 1936 |
| SfcI | CTRYAG | 2 cut(s) | 1413, 1449 |
| SfuI | TTCGAA | 2 cut(s) | 159, 992 |
| SinI | GGWCC | 5 cut(s) | 102, 460, 997, 1901, 2509 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1808, 1896, 2130 |
| SmlI | CTYRAG | 3 cut(s) | 106, 2389, 2395 |
| SmoI | CTYRAG | 3 cut(s) | 106, 2389, 2395 |
| SpeI | ACTAGT | 4 cut(s) | 269, 517, 1148, 1781 |
| SphI | GCATGC | 1 cut(s) | 2129 |
| SsiI | CCGC | 2 cut(s) | 1129, 2138 |
| SstI | GAGCTC | 1 cut(s) | 1235 |
| StyD4I | CCNGG | 3 cut(s) | 339, 538, 625 |
| StyI | CCWWGG | 4 cut(s) | 27, 603, 915, 2113 |
| TaaI | ACNGT | 5 cut(s) | 328, 400, 1598, 1733, 2297 |
| TaiI | ACGT | 4 cut(s) | 879, 1808, 1812, 2409 |
| TaqI | TCGA | 8 cut(s) | 146, 159, 217, 276, 703, 758, 992, 1107 |
| TaqII | GACCGA | 1 cut(s) | 448 |
| TatI | WGTACW | 2 cut(s) | 266, 400 |
| TscAI | CASTG | 3 cut(s) | 333, 1738, 1972 |
| TseI | GCWGC | 1 cut(s) | 2175 |
| TspRI | CASTG | 3 cut(s) | 333, 1738, 1972 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 689 |
| VneI | GTGCAC | 1 cut(s) | 1535 |
| VpaK11BI | GGWCC | 5 cut(s) | 102, 460, 997, 1901, 2509 |
| VspI | ATTAAT | 1 cut(s) | 498 |
| XapI | RAATTY | 4 cut(s) | 525, 1269, 1571, 1706 |
| XbaI | TCTAGA | 1 cut(s) | 478 |
| XceI | RCATGY | 3 cut(s) | 434, 908, 2129 |
| XmiI | GTMKAC | 2 cut(s) | 276, 719 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1855 |
| ZrmI | AGTACT | 1 cut(s) | 268 |
| Zsp2I | ATGCAT | 1 cut(s) | 1114 |