Rw3G012280

Domain of unknown function (DUF4378)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0011147
Physical Location & Seq
Reverse (-)
12075201 .. 12080014
4814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G012280.1

Sequence Viewer

Length: 2301 bp
ATGGGAAGGAACTTGCGAGAAAAACAGCCTAGGGATGCAACAGGGAATGAGCGTCCAGGGACTCCAGGGTGTGTATGGGGCATGCTACATGTCATGAAGTATCACCACTGGCATTATGTCAAGAAAAGACTGATGTACAAGAAGCGTGGCAATAATAAAAATGGTGCAGGAGTTGGAAATCATGGGAATTGTGGAAATGCATGTAGTCTTCAGAATATACAAGACAATGATGCTAAGATGGACAAAACTACTCCTGCCGAAGAAATGATAAATCCGTTGAGTCCAACATCCAAAGCTTCTGTTAAGGCCCGAATAAAAGCACGAATTGCTGAAGAAATGGCTAAGAAGAGGGGCAGATATAACCGGACCTCAAGCTGTCCTGTACGATCACAATTGACAAGAACAGAATCGATACATCATTTCGAACCACCTTCAAATATGGATCCAATTGCTGAAATGGTATTGAATGAGGCAAGTCCTCGACCTGTTGCTCACAAAAACAAGGAAAGCTCTTCTTCTGAAGAACCAAGTACTAGTGTCGACAACAATTGTGCAGAGAGCAGTCCAATGAGTGTTACTGGAGATCCCACAGTGGATCATGTTCCGGTTAATGAGAACCAAAAGGATGAGCCACTTAGTCAAGAACAGCTAGACAATGACACAGTACAAGATATGTTACAGAAGAAGTTGATACATGTTAAAGAACTTGACGCAGATTCTTCGGTCCATCAAAAGGAGTATCTAGAGGCTTTGGATATAATTAATGTAAACAAAGAGTTACTGGTGAAAATTTTACATGATCCGGGTTCTCCTCTAGTTCAGCACTTCCAGAATCAACAAGCAGTCAGCGCAAAAACGAGTTTAACCAAGGCAGAGTCATTTCCTATGCCTGGTTCATCAGGCAAAGGAGGTTCTGAACCTACTAAGCTCAAACCCAAGCATGAGCCAAAAGATGGTAGTCCAGCTCGAAAACCTACATGGTCTACTTCATTGAAATATGCTGGGGAACGGCCAATGCCATCGATTACTGATCAGAATATGGAGAGTTCATCTTCCCCTTCTCAACCCAGTTTGATGAGTCAAGGTGAGAATCCGGTGGCAATTAAGCGTTTCAAGGATCTTAGACAAAAAATAAAGCACGTGATTAAGGAGAGTAAACAAGAGAGACATGTGATTTCCATGGAGGCCATCCTTCACAAGATTCCTCATGGACAAAAGCTCACTAAAGAACTAGAGCAGGAGATTGTTAGCCATTCGAAGGACCCTGTATTGCATAGAGAAGGTAAAGATAGTCCAAGTAGTTATGGAAGTGATCATTCAGTTTCTCCCCTAAAGAAAAAAATGCCCAGCATGAGAAGAACATCATCTTTCGATGCATCACTTGATAGGTACCGCAGGTTGTATGAGATGACTAGTTTCAAGAAAGAGGACAAATGCCAGCCATCATATGAGAGATTGAAAGTTAGAGTAGAAGATTCAGGCTCACCATTCCAGAGCTCACCTTTCCGGAAAGCTCCCAAAAGTCTGGGAAGAATTTACTCCTTACCTGATATAGAATCATACTATCAGAATGAGGAATCTCCAGATGGTTTTCCTCCTCCATCGCTATTTAAGACCAGTGTGGATGGAAATGCAAGCACAAAAAGCAGATTTAGTGAACAAAAGAGGGAGCTTTCTATAGGTTCAGAAAATGAGTTGCAGTTAGATTTTCCTATAGAAAGTGAAGTCCAAGCAAACTTGGATGATGCTACTGAAACTAATGCAGTTACTAGAGATAAGGTGGAATCTACATCAGTTGTGCACAATGAGACAAGTTCTAAGGTGTCAAATGATGAATTTGAAAAATTGGCAACAGGGGACAGTATTTCTCATAAAGAACAAGATACTAAAACTAATGCAGTTACTAGAGATAAGGTGGAATCTACATCAGTTGTGCATGATGAGACAATTAGCAGTGGATTGGATACTGAGGAAGTAGAAACTCCTACAAAACACGCGTGTTATGACATGAATCATGTTCAAGTTGATGAAAGAGATATGGCCGAGTTTAATTATGTGAGAGATGTGTTGGAGTTTTCTGGATTCAAAGGAAACGAGTGCCTTGGGACTTGGCATGCTGATGATCCGCCAGTCTATCCTTTGCTATATGAGGGCGCAGAAGGCTGCTTCGTTCTTGATCCTGATTGTGCAGGAAATGAAGAAGATGGTGAATGTGATCACTTGCTCTTGTTTGATCTAATCAATGAAGTGTTGATGGAGATTTATGGGAGGTCATACAACTACTATGAAGAAAAATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3741 DUF4378

Protein Analysis

766

Amino Acids

86.04

Weight (kDa)

5.79

Isoelectric Point (pI)

54.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3741 PF12552 228 - 270 9.6e-12 Protein of unknown function (DUF3741)
DUF4378 PF14309 682 - 763 1.1e-14 Domain of unknown function (DUF4378)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011147)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02390 AT5G02390 AT5G02390
fragaria_vesca FvH4_6g13720
malus_domestica MD04G1128800.v1.1 MD12G1141400.v1.1
prunus_persica Prupe.6G254700_v2.0.a1
pyrus_communis pycom04g11700 pycom12g13630
rosa_chinensis RchiOBHm_Chr3g0466591
rosa_laevigata RLG00000024561
rosa_multiflora Rmu_sc0020778.1_g000002
rosa_roxburghii Rroxscaffold_6G00414320
rosa_rugosa Rorug03G0083000.1 Rorug03G0083100
rosa_samantha Rh3AG129900 Rh3BG151300 Rh3CG151000 Rh3DG151900
rosa_wichuraiana Rw3G012280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1386
Acc65I GGTACC 1 cut(s) 1389
AccB1I GGYRCC 1 cut(s) 1389
AccB7I CCANNNNNTGG 1 cut(s) 953
AccI GTMKAC 2 cut(s) 540, 983
AccII CGCG 1 cut(s) 1997
AccIII TCCGGA 1 cut(s) 1506
AciI CCGC 2 cut(s) 1393, 2126
AclWI GGATC 8 cut(s) 437, 450, 578, 603, 794, 1125, 2117, 2171
AcoI YGGCCR 2 cut(s) 1010, 2040
AcsI RAATTY 3 cut(s) 789, 1533, 1835
AcuI CTGAAG 3 cut(s) 194, 351, 540
AcvI CACGTG 1 cut(s) 1141
AfaI GTAC 5 cut(s) 137, 384, 532, 666, 1391
AfiI CCNNNNNNNGG 4 cut(s) 733, 890, 953, 1258
AflIII ACRYGT 4 cut(s) 88, 694, 1168, 1995
AgsI TTSAA 9 cut(s) 435, 466, 994, 1114, 1420, 1459, 1841, 2021, 2086
AhlI ACTAGT 2 cut(s) 533, 1412
AjnI CCWGG 3 cut(s) 55, 64, 889
Alw21I GWGCWC 2 cut(s) 1499, 1803
Alw26I GTCTC 3 cut(s) 1159, 1802, 1937
Alw44I GTGCAC 1 cut(s) 1799
AlwI GGATC 8 cut(s) 437, 450, 578, 603, 794, 1125, 2117, 2171
Aor13HI TCCGGA 1 cut(s) 1506
AoxI GGCC 4 cut(s) 306, 1010, 1185, 2040
ApaLI GTGCAC 1 cut(s) 1799
ApeKI GCWGC 1 cut(s) 2163
ApoI RAATTY 3 cut(s) 789, 1533, 1835
AseI ATTAAT 1 cut(s) 762
Asp718I GGTACC 1 cut(s) 1389
AspA2I CCTAGG 1 cut(s) 29
AspLEI GCGC 2 cut(s) 851, 2156
AspS9I GGNCC 4 cut(s) 307, 366, 724, 1261
AsuC2I CCSGG 1 cut(s) 804
AsuHPI GGTGA 6 cut(s) 95, 796, 1097, 1476, 1491, 2219
AsuII TTCGAA 2 cut(s) 423, 1256
AvaII GGWCC 3 cut(s) 366, 724, 1261
AvrII CCTAGG 1 cut(s) 29
BaeGI GKGCMC 1 cut(s) 1803
BamHI GGATCC 1 cut(s) 442
BanI GGYRCC 1 cut(s) 1389
BanII GRGCYC 1 cut(s) 1499
BbrPI CACGTG 1 cut(s) 1141
BbsI GAAGAC 1 cut(s) 200
Bbv12I GWGCWC 2 cut(s) 1499, 1803
BbvI GCAGC 1 cut(s) 2150
BceAI ACGGC 1 cut(s) 1025
BcgI CGANNNNNNTGC 2 cut(s) 702, 736
BciT130I CCWGG 3 cut(s) 57, 66, 891
BciVI GTATCC 1 cut(s) 1957
BclI TGATCA 3 cut(s) 1030, 1312, 2215
BcnI CCSGG 1 cut(s) 804
BcoDI GTCTC 3 cut(s) 1159, 1802, 1937
BcuI ACTAGT 2 cut(s) 533, 1412
BfaI CTAG 9 cut(s) 30, 534, 650, 743, 815, 1232, 1413, 1770, 1905
BfmI CTRYAG 2 cut(s) 1677, 1713
BfuAI ACCTGC 1 cut(s) 1386
BfuI GTATCC 1 cut(s) 1957
BisI GCNGC 1 cut(s) 2164
BlnI CCTAGG 1 cut(s) 29
BlsI GCNGC 1 cut(s) 2165
BmcAI AGTACT 1 cut(s) 532
Bme1390I CCNGG 4 cut(s) 57, 66, 804, 891
Bme18I GGWCC 3 cut(s) 366, 724, 1261
BmgT120I GGNCC 4 cut(s) 307, 366, 724, 1261
BmiI GGNNCC 3 cut(s) 444, 1263, 1391
BmrFI CCNGG 4 cut(s) 57, 66, 804, 891
BmrI ACTGGG 1 cut(s) 1062
BmsI GCATC 5 cut(s) 25, 220, 1363, 1385, 1735
BmuI ACTGGG 1 cut(s) 1062
BpiI GAAGAC 1 cut(s) 200
BpmI CTGGAG 3 cut(s) 48, 600, 1566
Bpu14I TTCGAA 2 cut(s) 423, 1256
BpuEI CTTGAG 1 cut(s) 355
BpuMI CCSGG 1 cut(s) 804
Bsa29I ATCGAT 2 cut(s) 410, 1022
BsaAI YACGTR 1 cut(s) 1141
BsaJI CCNNGG 6 cut(s) 29, 56, 65, 867, 1179, 2101
BsaWI WCCGGW 4 cut(s) 363, 604, 1093, 1506
Bsc4I CCNNNNNNNGG 4 cut(s) 733, 890, 953, 1258
Bse1I ACTGG 6 cut(s) 113, 583, 786, 1068, 1617, 2129
BseAI TCCGGA 1 cut(s) 1506
BseBI CCWGG 3 cut(s) 57, 66, 891
BseCI ATCGAT 2 cut(s) 410, 1022
BseDI CCNNGG 6 cut(s) 29, 56, 65, 867, 1179, 2101
BseGI GGATG 6 cut(s) 40, 287, 631, 1188, 1630, 1747
BseLI CCNNNNNNNGG 4 cut(s) 733, 890, 953, 1258
BseMII CTCAG 1 cut(s) 1959
BseNI ACTGG 6 cut(s) 113, 583, 786, 1068, 1617, 2129
BseRI GAGGAG 2 cut(s) 801, 1587
BseSI GKGCMC 1 cut(s) 1803
BseXI GCAGC 1 cut(s) 2150
BseYI CCCAGC 2 cut(s) 1001, 1346
BsgI GTGCAG 3 cut(s) 186, 573, 2208
Bsh1236I CGCG 1 cut(s) 1997
BshFI GGCC 4 cut(s) 308, 1012, 1187, 2042
BshNI GGYRCC 1 cut(s) 1389
BshVI ATCGAT 2 cut(s) 410, 1022
BsiHKAI GWGCWC 2 cut(s) 1499, 1803
BsiSI CCGG 5 cut(s) 364, 605, 803, 1094, 1507
BslFI GGGAC 3 cut(s) 73, 1871, 2119
BslI CCNNNNNNNGG 4 cut(s) 733, 890, 953, 1258
BsmAI GTCTC 3 cut(s) 1159, 1802, 1937
BsmFI GGGAC 3 cut(s) 73, 1871, 2119
BsnI GGCC 4 cut(s) 308, 1012, 1187, 2042
Bsp119I TTCGAA 2 cut(s) 423, 1256
Bsp1286I GDGCHC 2 cut(s) 1499, 1803
Bsp13I TCCGGA 1 cut(s) 1506
Bsp1407I TGTACA 1 cut(s) 135
Bsp19I CCATGG 1 cut(s) 1179
BspACI CCGC 2 cut(s) 1393, 2126
BspANI GGCC 4 cut(s) 308, 1012, 1187, 2042
BspCNI CTCAG 1 cut(s) 1960
BspDI ATCGAT 2 cut(s) 410, 1022
BspEI TCCGGA 1 cut(s) 1506
BspFNI CGCG 1 cut(s) 1997
BspHI TCATGA 1 cut(s) 93
BspLI GGNNCC 3 cut(s) 444, 1263, 1391
BspMI ACCTGC 1 cut(s) 1386
BspPI GGATC 8 cut(s) 437, 450, 578, 603, 794, 1125, 2117, 2171
BspQI GCTCTTC 1 cut(s) 517
BspT104I TTCGAA 2 cut(s) 423, 1256
BspT107I GGYRCC 1 cut(s) 1389
BsrGI TGTACA 1 cut(s) 135
BsrI ACTGG 6 cut(s) 113, 583, 786, 1068, 1617, 2129
BssECI CCNNGG 6 cut(s) 29, 56, 65, 867, 1179, 2101
BssT1I CCWWGG 4 cut(s) 29, 867, 1179, 2101
Bst2UI CCWGG 3 cut(s) 57, 66, 891
Bst4CI ACNGT 3 cut(s) 592, 664, 1862
Bst6I CTCTTC 2 cut(s) 341, 517
BstAPI GCANNNNNTGC 1 cut(s) 326
BstAUI TGTACA 1 cut(s) 135
BstBAI YACGTR 1 cut(s) 1141
BstBI TTCGAA 2 cut(s) 423, 1256
BstC8I GCNNGC 4 cut(s) 83, 1439, 1636, 2115
BstDEI CTNAG 7 cut(s) 234, 342, 635, 924, 1121, 1818, 1968
BstDSI CCRYGG 1 cut(s) 1179
BstF5I GGATG 6 cut(s) 40, 287, 631, 1188, 1630, 1747
BstFNI CGCG 1 cut(s) 1997
BstHHI GCGC 2 cut(s) 851, 2156
BstMAI GTCTC 3 cut(s) 1159, 1802, 1937
BstMWI GCNNNNNNNGC 4 cut(s) 326, 848, 1644, 2160
BstNI CCWGG 3 cut(s) 57, 66, 891
BstNSI RCATGY 6 cut(s) 85, 92, 204, 698, 1172, 2117
BstSCI CCNGG 4 cut(s) 55, 64, 802, 889
BstSFI CTRYAG 2 cut(s) 1677, 1713
BstSLI GKGCMC 1 cut(s) 1803
BstUI CGCG 1 cut(s) 1997
BstV1I GCAGC 1 cut(s) 2150
BstV2I GAAGAC 1 cut(s) 200
BstX2I RGATCY 3 cut(s) 442, 583, 1117
BstXI CCANNNNNNTGG 1 cut(s) 1525
BstYI RGATCY 3 cut(s) 442, 583, 1117
Bsu15I ATCGAT 2 cut(s) 410, 1022
BsuI GTATCC 1 cut(s) 1957
BsuRI GGCC 4 cut(s) 308, 1012, 1187, 2042
BsuTUI ATCGAT 2 cut(s) 410, 1022
BtgI CCRYGG 1 cut(s) 1179
BtgZI GCGATG 1 cut(s) 1587
BtsCI GGATG 6 cut(s) 40, 287, 631, 1188, 1630, 1747
BtsI GCAGTG 1 cut(s) 1960
BtsIMutI CAGTG 4 cut(s) 106, 597, 1624, 1960
BveI ACCTGC 1 cut(s) 1386
Cac8I GCNNGC 4 cut(s) 83, 1439, 1636, 2115
CciI TCATGA 1 cut(s) 93
CfoI GCGC 2 cut(s) 851, 2156
Cfr13I GGNCC 4 cut(s) 307, 366, 724, 1261
ClaI ATCGAT 2 cut(s) 410, 1022
CseI GACGC 2 cut(s) 41, 719
Csp6I GTAC 5 cut(s) 136, 383, 531, 665, 1390
CspCI CAANNNNNGTGG 2 cut(s) 127, 162
CviQI GTAC 5 cut(s) 136, 383, 531, 665, 1390
DdeI CTNAG 7 cut(s) 234, 342, 635, 924, 1121, 1818, 1968
EaeI YGGCCR 2 cut(s) 1010, 2040
Eam1104I CTCTTC 2 cut(s) 341, 517
EarI CTCTTC 2 cut(s) 341, 517
EciI GGCGGA 1 cut(s) 2115
Ecl136II GAGCTC 1 cut(s) 1497
Eco130I CCWWGG 4 cut(s) 29, 867, 1179, 2101
Eco24I GRGCYC 1 cut(s) 1499
Eco47I GGWCC 3 cut(s) 366, 724, 1261
Eco53kI GAGCTC 1 cut(s) 1497
Eco57I CTGAAG 3 cut(s) 194, 351, 540
Eco72I CACGTG 1 cut(s) 1141
EcoICRI GAGCTC 1 cut(s) 1497
EcoO109I RGGNCCY 1 cut(s) 1261
EcoRII CCWGG 3 cut(s) 55, 64, 889
EcoT14I CCWWGG 4 cut(s) 29, 867, 1179, 2101
EcoT22I ATGCAT 2 cut(s) 202, 1378
EcoT38I GRGCYC 1 cut(s) 1499
ErhI CCWWGG 4 cut(s) 29, 867, 1179, 2101
FalI AAGNNNNNCTT 2 cut(s) 499, 531
FaqI GGGAC 3 cut(s) 73, 1871, 2119
FauNDI CATATG 1 cut(s) 1447
FbaI TGATCA 3 cut(s) 1030, 1312, 2215
FblI GTMKAC 2 cut(s) 540, 983
Fnu4HI GCNGC 1 cut(s) 2164
FokI GGATG 6 cut(s) 47, 274, 638, 1175, 1637, 1754
FriOI GRGCYC 1 cut(s) 1499
Fsp4HI GCNGC 1 cut(s) 2164
FspBI CTAG 9 cut(s) 30, 534, 650, 743, 815, 1232, 1413, 1770, 1905
GlaI GCGC 2 cut(s) 850, 2155
GluI GCNGC 1 cut(s) 2164
GsaI CCCAGC 2 cut(s) 1005, 1350
GsuI CTGGAG 3 cut(s) 48, 600, 1566
HaeIII GGCC 4 cut(s) 308, 1012, 1187, 2042
HapII CCGG 5 cut(s) 364, 605, 803, 1094, 1507
HgaI GACGC 2 cut(s) 41, 719
HhaI GCGC 2 cut(s) 851, 2156
Hin6I GCGC 2 cut(s) 849, 2154
HinP1I GCGC 2 cut(s) 849, 2154
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HindIII AAGCTT 1 cut(s) 294
HpaII CCGG 5 cut(s) 364, 605, 803, 1094, 1507
HphI GGTGA 6 cut(s) 95, 796, 1097, 1476, 1491, 2219
Hpy166II GTNNAC 6 cut(s) 541, 769, 984, 1157, 1658, 1801
Hpy188I TCNGA 6 cut(s) 213, 520, 916, 1035, 1569, 1687
Hpy8I GTNNAC 6 cut(s) 541, 769, 984, 1157, 1658, 1801
HpyAV CCTTC 6 cut(s) 441, 1068, 1202, 1252, 1274, 2153
HpyCH4III ACNGT 3 cut(s) 592, 664, 1862
HpyCH4IV ACGT 1 cut(s) 1140
HpyF10VI GCNNNNNNNGC 4 cut(s) 326, 848, 1644, 2160
HpyF3I CTNAG 7 cut(s) 234, 342, 635, 924, 1121, 1818, 1968
HpySE526I ACGT 1 cut(s) 1140
HspAI GCGC 2 cut(s) 849, 2154
Kpn2I TCCGGA 1 cut(s) 1506
KpnI GGTACC 1 cut(s) 1393
Ksp22I TGATCA 3 cut(s) 1030, 1312, 2215
LguI GCTCTTC 1 cut(s) 517
LmnI GCTCC 2 cut(s) 1519, 1669
Lsp1109I GCAGC 1 cut(s) 2150
LweI GCATC 5 cut(s) 25, 220, 1363, 1385, 1735
MaeI CTAG 9 cut(s) 30, 534, 650, 743, 815, 1232, 1413, 1770, 1905
MaeII ACGT 1 cut(s) 1140
MaeIII GTNAC 5 cut(s) 574, 675, 777, 1765, 1900
MfeI CAATTG 3 cut(s) 392, 447, 547
MflI RGATCY 3 cut(s) 442, 583, 1117
MhlI GDGCHC 2 cut(s) 1499, 1803
MluI ACGCGT 1 cut(s) 1995
MlyI GAGTC 4 cut(s) 55, 289, 884, 1087
MmeI TCCRAC 3 cut(s) 154, 308, 2049
Mph1103I ATGCAT 2 cut(s) 202, 1378
MroI TCCGGA 1 cut(s) 1506
MseI TTAA 9 cut(s) 303, 609, 699, 762, 863, 1104, 1146, 1611, 2049
MslI CAYNNNNRTG 1 cut(s) 2118
MspI CCGG 5 cut(s) 364, 605, 803, 1094, 1507
MspR9I CCNGG 4 cut(s) 57, 66, 804, 891
MunI CAATTG 3 cut(s) 392, 447, 547
MvaI CCWGG 3 cut(s) 57, 66, 891
MvnI CGCG 1 cut(s) 1997
MwoI GCNNNNNNNGC 4 cut(s) 326, 848, 1644, 2160
NciI CCSGG 1 cut(s) 804
NcoI CCATGG 1 cut(s) 1179
NdeI CATATG 1 cut(s) 1447
NlaIV GGNNCC 3 cut(s) 444, 1263, 1391
NmeAIII GCCGAG 1 cut(s) 2068
NsiI ATGCAT 2 cut(s) 202, 1378
NspI RCATGY 6 cut(s) 85, 92, 204, 698, 1172, 2117
NspV TTCGAA 2 cut(s) 423, 1256
PaeI GCATGC 2 cut(s) 85, 2117
PagI TCATGA 1 cut(s) 93
PciI ACATGT 3 cut(s) 88, 694, 1168
PciSI GCTCTTC 1 cut(s) 517
PflMI CCANNNNNTGG 1 cut(s) 953
PkrI GCNGC 1 cut(s) 2165
PleI GAGTC 4 cut(s) 55, 288, 883, 1086
PmaCI CACGTG 1 cut(s) 1141
PmlI CACGTG 1 cut(s) 1141
PpsI GAGTC 4 cut(s) 55, 288, 883, 1086
Ppu21I YACGTR 1 cut(s) 1141
PpuMI RGGWCCY 1 cut(s) 1261
PscI ACATGT 3 cut(s) 88, 694, 1168
PshBI ATTAAT 1 cut(s) 762
Psp124BI GAGCTC 1 cut(s) 1499
Psp5II RGGWCCY 1 cut(s) 1261
Psp6I CCWGG 3 cut(s) 55, 64, 889
PspCI CACGTG 1 cut(s) 1141
PspFI CCCAGC 2 cut(s) 1001, 1346
PspGI CCWGG 3 cut(s) 55, 64, 889
PspN4I GGNNCC 3 cut(s) 444, 1263, 1391
PspPI GGNCC 4 cut(s) 307, 366, 724, 1261
PspPPI RGGWCCY 1 cut(s) 1261
PsuI RGATCY 3 cut(s) 442, 583, 1117
RsaI GTAC 5 cut(s) 137, 384, 532, 666, 1391
RsaNI GTAC 5 cut(s) 136, 383, 531, 665, 1390
RseI CAYNNNNRTG 1 cut(s) 2118
SacI GAGCTC 1 cut(s) 1499
SalI GTCGAC 1 cut(s) 539
SapI GCTCTTC 1 cut(s) 517
SaqAI TTAA 9 cut(s) 303, 609, 699, 762, 863, 1104, 1146, 1611, 2049
SatI GCNGC 1 cut(s) 2164
Sau96I GGNCC 4 cut(s) 307, 366, 724, 1261
ScaI AGTACT 1 cut(s) 532
SchI GAGTC 4 cut(s) 55, 289, 884, 1087
ScrFI CCNGG 4 cut(s) 57, 66, 804, 891
SduI GDGCHC 2 cut(s) 1499, 1803
SfaNI GCATC 5 cut(s) 25, 220, 1363, 1385, 1735
SfcI CTRYAG 2 cut(s) 1677, 1713
SfuI TTCGAA 2 cut(s) 423, 1256
SinI GGWCC 3 cut(s) 366, 724, 1261
SmiMI CAYNNNNRTG 1 cut(s) 2118
SmlI CTYRAG 1 cut(s) 370
SmoI CTYRAG 1 cut(s) 370
SpeI ACTAGT 2 cut(s) 533, 1412
SphI GCATGC 2 cut(s) 85, 2117
SsiI CCGC 2 cut(s) 1393, 2126
SspMI CTAG 9 cut(s) 30, 534, 650, 743, 815, 1232, 1413, 1770, 1905
SstI GAGCTC 1 cut(s) 1499
StyD4I CCNGG 4 cut(s) 55, 64, 802, 889
StyI CCWWGG 4 cut(s) 29, 867, 1179, 2101
TaaI ACNGT 3 cut(s) 592, 664, 1862
TaiI ACGT 1 cut(s) 1143
TaqI TCGA 8 cut(s) 410, 423, 481, 540, 967, 1022, 1256, 1371
TaqII GACCGA 1 cut(s) 712
TatI WGTACW 3 cut(s) 135, 530, 664
Tru1I TTAA 9 cut(s) 303, 609, 699, 762, 863, 1104, 1146, 1611, 2049
Tru9I TTAA 9 cut(s) 303, 609, 699, 762, 863, 1104, 1146, 1611, 2049
TscAI CASTG 4 cut(s) 113, 597, 1624, 1960
TseI GCWGC 1 cut(s) 2163
TspGWI ACGGA 1 cut(s) 264
TspRI CASTG 4 cut(s) 113, 597, 1624, 1960
Van91I CCANNNNNTGG 1 cut(s) 953
VneI GTGCAC 1 cut(s) 1799
VpaK11BI GGWCC 3 cut(s) 366, 724, 1261
VspI ATTAAT 1 cut(s) 762
XapI RAATTY 3 cut(s) 789, 1533, 1835
XbaI TCTAGA 1 cut(s) 742
XceI RCATGY 6 cut(s) 85, 92, 204, 698, 1172, 2117
XcmI CCANNNNNNNNNTGG 1 cut(s) 72
XmaJI CCTAGG 1 cut(s) 29
XmiI GTMKAC 2 cut(s) 540, 983
XspI CTAG 9 cut(s) 30, 534, 650, 743, 815, 1232, 1413, 1770, 1905
ZrmI AGTACT 1 cut(s) 532
Zsp2I ATGCAT 2 cut(s) 202, 1378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.