Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G25780 AT5G27640 AT5G27640 AT5G27640 |
| fragaria_vesca | FvH4_6g00800 |
| malus_domestica | MD04G1241100.v1.1 MD12G1258100.v1.1 |
| prunus_persica | Prupe.6G358600_v2.0.a1 |
| pyrus_communis | pycom04g21280 pycom12g23670 |
| rosa_chinensis | RchiOBHm_Chr3g0448281 |
| rosa_laevigata | RLG00000025930 |
| rosa_multiflora | Rmu_sc0005582.1_g000005 |
| rosa_roxburghii | Rroxscaffold_6G00426430 |
| rosa_rugosa | Rorug02G0610000 |
| rosa_samantha | Rh3AG009600 Rh3BG009200 Rh3CG009200 Rh3DG009800 |
| rosa_wichuraiana | Rw3G000780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1601 |
| AatII | GACGTC | 1 cut(s) | 12 |
| Acc36I | ACCTGC | 1 cut(s) | 1174 |
| AccB1I | GGYRCC | 2 cut(s) | 722, 1842 |
| AccI | GTMKAC | 2 cut(s) | 1062, 1295 |
| AciI | CCGC | 3 cut(s) | 41, 984, 2026 |
| AclWI | GGATC | 6 cut(s) | 299, 1112, 1706, 1719, 1827, 1974 |
| AcoI | YGGCCR | 2 cut(s) | 684, 962 |
| AcsI | RAATTY | 2 cut(s) | 151, 252 |
| AcuI | CTGAAG | 4 cut(s) | 600, 1084, 1572, 1731 |
| AcyI | GRCGYC | 2 cut(s) | 9, 1843 |
| AdeI | CACNNNGTG | 1 cut(s) | 791 |
| AfaI | GTAC | 6 cut(s) | 224, 497, 937, 1250, 1910, 2099 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 205, 672, 1148, 1366 |
| AgeI | ACCGGT | 1 cut(s) | 1290 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1069 |
| AjnI | CCWGG | 5 cut(s) | 97, 502, 762, 787, 1935 |
| Alw26I | GTCTC | 3 cut(s) | 95, 1347, 2120 |
| AlwI | GGATC | 6 cut(s) | 299, 1112, 1706, 1719, 1827, 1974 |
| Ama87I | CYCGRG | 2 cut(s) | 543, 671 |
| ApaI | GGGCCC | 1 cut(s) | 478 |
| ApeKI | GCWGC | 4 cut(s) | 67, 707, 816, 1633 |
| ApoI | RAATTY | 2 cut(s) | 151, 252 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 155, 187 |
| AsiGI | ACCGGT | 1 cut(s) | 1290 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1223, 1622, 1769 |
| AspLEI | GCGC | 2 cut(s) | 1596, 1845 |
| AsuC2I | CCSGG | 1 cut(s) | 203 |
| AsuHPI | GGTGA | 7 cut(s) | 113, 777, 803, 817, 1101, 1186, 1575 |
| AvaI | CYCGRG | 2 cut(s) | 543, 671 |
| AvaII | GGWCC | 4 cut(s) | 73, 663, 1782, 1933 |
| AxyI | CCTNAGG | 1 cut(s) | 357 |
| BaeGI | GKGCMC | 1 cut(s) | 478 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 567, 600 |
| BalI | TGGCCA | 1 cut(s) | 686 |
| BamHI | GGATCC | 1 cut(s) | 1711 |
| BanI | GGYRCC | 2 cut(s) | 722, 1842 |
| BanII | GRGCYC | 2 cut(s) | 478, 1422 |
| BauI | CACGAG | 1 cut(s) | 837 |
| BbsI | GAAGAC | 2 cut(s) | 389, 2046 |
| BbvI | GCAGC | 4 cut(s) | 79, 694, 828, 1645 |
| BccI | CCATC | 4 cut(s) | 278, 1370, 1753, 1864 |
| BceAI | ACGGC | 4 cut(s) | 54, 617, 1512, 1807 |
| BciT130I | CCWGG | 5 cut(s) | 99, 504, 764, 789, 1937 |
| BciVI | GTATCC | 3 cut(s) | 386, 568, 1803 |
| BcnI | CCSGG | 1 cut(s) | 203 |
| BcoDI | GTCTC | 3 cut(s) | 95, 1347, 2120 |
| BfaI | CTAG | 1 cut(s) | 1170 |
| BfmI | CTRYAG | 2 cut(s) | 811, 1737 |
| BfoI | RGCGCY | 2 cut(s) | 1597, 1846 |
| BfuAI | ACCTGC | 1 cut(s) | 1174 |
| BfuI | GTATCC | 3 cut(s) | 386, 568, 1803 |
| BisI | GCNGC | 5 cut(s) | 42, 68, 708, 817, 1634 |
| BlpI | GCTNAGC | 1 cut(s) | 366 |
| BlsI | GCNGC | 5 cut(s) | 43, 69, 709, 818, 1635 |
| Bme1390I | CCNGG | 6 cut(s) | 99, 203, 504, 764, 789, 1937 |
| Bme18I | GGWCC | 4 cut(s) | 73, 663, 1782, 1933 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1069 |
| BmeT110I | CYCGRG | 2 cut(s) | 543, 671 |
| BmiI | GGNNCC | 8 cut(s) | 210, 476, 477, 665, 724, 1419, 1713, 1844 |
| BmrFI | CCNGG | 6 cut(s) | 99, 203, 504, 764, 789, 1937 |
| BmsI | GCATC | 4 cut(s) | 285, 586, 735, 832 |
| BpiI | GAAGAC | 2 cut(s) | 389, 2046 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 149, 181 |
| BpmI | CTGGAG | 4 cut(s) | 465, 897, 960, 1658 |
| Bpu10I | CCTNAGC | 1 cut(s) | 615 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 366 |
| BpuEI | CTTGAG | 1 cut(s) | 1400 |
| BpuMI | CCSGG | 1 cut(s) | 203 |
| BsaHI | GRCGYC | 2 cut(s) | 9, 1843 |
| BsaJI | CCNNGG | 8 cut(s) | 375, 503, 762, 1422, 1478, 1668, 1847, 1929 |
| BsaWI | WCCGGW | 1 cut(s) | 1290 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 205, 672, 1148, 1366 |
| Bse118I | RCCGGY | 2 cut(s) | 964, 1290 |
| Bse1I | ACTGG | 4 cut(s) | 886, 943, 1256, 1723 |
| Bse21I | CCTNAGG | 1 cut(s) | 357 |
| Bse3DI | GCAATG | 2 cut(s) | 665, 1401 |
| BseBI | CCWGG | 5 cut(s) | 99, 504, 764, 789, 1937 |
| BseDI | CCNNGG | 8 cut(s) | 375, 503, 762, 1422, 1478, 1668, 1847, 1929 |
| BseGI | GGATG | 6 cut(s) | 300, 757, 1356, 1660, 1945, 1989 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 205, 672, 1148, 1366 |
| BseMI | GCAATG | 2 cut(s) | 665, 1401 |
| BseMII | CTCAG | 7 cut(s) | 180, 357, 371, 606, 1863, 2007, 2077 |
| BseNI | ACTGG | 4 cut(s) | 886, 943, 1256, 1723 |
| BseRI | GAGGAG | 7 cut(s) | 345, 1217, 1895, 1898, 1993, 2108, 2159 |
| BseSI | GKGCMC | 1 cut(s) | 478 |
| BseXI | GCAGC | 4 cut(s) | 79, 694, 828, 1645 |
| BseYI | CCCAGC | 1 cut(s) | 950 |
| BshNI | GGYRCC | 2 cut(s) | 722, 1842 |
| BshTI | ACCGGT | 1 cut(s) | 1290 |
| BsiHKCI | CYCGRG | 2 cut(s) | 543, 671 |
| BsiSI | CCGG | 3 cut(s) | 203, 965, 1291 |
| BslFI | GGGAC | 3 cut(s) | 20, 649, 688 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 205, 672, 1148, 1366 |
| BsmAI | GTCTC | 3 cut(s) | 95, 1347, 2120 |
| BsmBI | CGTCTC | 1 cut(s) | 95 |
| BsmFI | GGGAC | 3 cut(s) | 20, 649, 688 |
| BsoBI | CYCGRG | 2 cut(s) | 543, 671 |
| Bsp120I | GGGCCC | 1 cut(s) | 474 |
| Bsp1286I | GDGCHC | 2 cut(s) | 478, 1422 |
| Bsp143I | GATC | 8 cut(s) | 304, 466, 547, 1117, 1398, 1711, 1819, 1966 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 366 |
| Bsp19I | CCATGG | 1 cut(s) | 1668 |
| BspACI | CCGC | 3 cut(s) | 41, 984, 2026 |
| BspCNI | CTCAG | 7 cut(s) | 179, 358, 370, 607, 1864, 2008, 2076 |
| BspHI | TCATGA | 2 cut(s) | 453, 1753 |
| BspLI | GGNNCC | 8 cut(s) | 210, 476, 477, 665, 724, 1419, 1713, 1844 |
| BspMAI | CTGCAG | 1 cut(s) | 1741 |
| BspMI | ACCTGC | 1 cut(s) | 1174 |
| BspPI | GGATC | 6 cut(s) | 299, 1112, 1706, 1719, 1827, 1974 |
| BspT107I | GGYRCC | 2 cut(s) | 722, 1842 |
| BsrDI | GCAATG | 2 cut(s) | 665, 1401 |
| BsrFI | RCCGGY | 2 cut(s) | 964, 1290 |
| BsrI | ACTGG | 4 cut(s) | 886, 943, 1256, 1723 |
| BssAI | RCCGGY | 2 cut(s) | 964, 1290 |
| BssECI | CCNNGG | 8 cut(s) | 375, 503, 762, 1422, 1478, 1668, 1847, 1929 |
| BssMI | GATC | 8 cut(s) | 304, 466, 547, 1117, 1398, 1711, 1819, 1966 |
| BssNAI | GTATAC | 1 cut(s) | 1296 |
| BssNI | GRCGYC | 2 cut(s) | 9, 1843 |
| BssSI | CACGAG | 1 cut(s) | 837 |
| BssT1I | CCWWGG | 5 cut(s) | 375, 1422, 1478, 1668, 1847 |
| Bst1107I | GTATAC | 1 cut(s) | 1296 |
| Bst2BI | CACGAG | 1 cut(s) | 837 |
| Bst2UI | CCWGG | 5 cut(s) | 99, 504, 764, 789, 1937 |
| Bst4CI | ACNGT | 1 cut(s) | 260 |
| Bst6I | CTCTTC | 4 cut(s) | 1970, 1989, 2085, 2118 |
| BstACI | GRCGYC | 2 cut(s) | 9, 1843 |
| BstC8I | GCNNGC | 5 cut(s) | 372, 633, 982, 1563, 1796 |
| BstDEI | CTNAG | 7 cut(s) | 166, 357, 366, 615, 1872, 2016, 2063 |
| BstDSI | CCRYGG | 1 cut(s) | 1668 |
| BstEII | GGTNACC | 3 cut(s) | 805, 1107, 1581 |
| BstF5I | GGATG | 6 cut(s) | 300, 757, 1356, 1660, 1945, 1989 |
| BstH2I | RGCGCY | 2 cut(s) | 1597, 1846 |
| BstHHI | GCGC | 2 cut(s) | 1596, 1845 |
| BstKTI | GATC | 8 cut(s) | 307, 469, 550, 1120, 1401, 1714, 1822, 1969 |
| BstMAI | GTCTC | 3 cut(s) | 95, 1347, 2120 |
| BstMBI | GATC | 8 cut(s) | 304, 466, 547, 1117, 1398, 1711, 1819, 1966 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 41, 120, 371, 610, 1849 |
| BstNI | CCWGG | 5 cut(s) | 99, 504, 764, 789, 1937 |
| BstNSI | RCATGY | 1 cut(s) | 433 |
| BstPI | GGTNACC | 3 cut(s) | 805, 1107, 1581 |
| BstSCI | CCNGG | 6 cut(s) | 97, 201, 502, 762, 787, 1935 |
| BstSFI | CTRYAG | 2 cut(s) | 811, 1737 |
| BstSLI | GKGCMC | 1 cut(s) | 478 |
| BstV1I | GCAGC | 4 cut(s) | 79, 694, 828, 1645 |
| BstV2I | GAAGAC | 2 cut(s) | 389, 2046 |
| BstX2I | RGATCY | 1 cut(s) | 1711 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 471 |
| BstYI | RGATCY | 1 cut(s) | 1711 |
| BstZ17I | GTATAC | 1 cut(s) | 1296 |
| Bsu36I | CCTNAGG | 1 cut(s) | 357 |
| BsuI | GTATCC | 3 cut(s) | 386, 568, 1803 |
| BtgI | CCRYGG | 1 cut(s) | 1668 |
| BtgZI | GCGATG | 1 cut(s) | 138 |
| BtsCI | GGATG | 6 cut(s) | 300, 757, 1356, 1660, 1945, 1989 |
| BtsI | GCAGTG | 1 cut(s) | 1746 |
| BtsIMutI | CAGTG | 3 cut(s) | 1234, 1240, 1746 |
| BveI | ACCTGC | 1 cut(s) | 1174 |
| Cac8I | GCNNGC | 5 cut(s) | 372, 633, 982, 1563, 1796 |
| CciI | TCATGA | 2 cut(s) | 453, 1753 |
| CfoI | GCGC | 2 cut(s) | 1596, 1845 |
| Cfr10I | RCCGGY | 2 cut(s) | 964, 1290 |
| CsiI | ACCWGGT | 1 cut(s) | 787 |
| Csp6I | GTAC | 6 cut(s) | 223, 496, 936, 1249, 1909, 2098 |
| CspAI | ACCGGT | 1 cut(s) | 1290 |
| CviQI | GTAC | 6 cut(s) | 223, 496, 936, 1249, 1909, 2098 |
| DdeI | CTNAG | 7 cut(s) | 166, 357, 366, 615, 1872, 2016, 2063 |
| DinI | GGCGCC | 1 cut(s) | 1844 |
| DpnI | GATC | 8 cut(s) | 306, 468, 549, 1119, 1400, 1713, 1821, 1968 |
| DpnII | GATC | 8 cut(s) | 304, 466, 547, 1117, 1398, 1711, 1819, 1966 |
| DraI | TTTAAA | 1 cut(s) | 904 |
| DraIII | CACNNNGTG | 1 cut(s) | 791 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1069 |
| EaeI | YGGCCR | 2 cut(s) | 684, 962 |
| Eam1104I | CTCTTC | 4 cut(s) | 1970, 1989, 2085, 2118 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1069 |
| EarI | CTCTTC | 4 cut(s) | 1970, 1989, 2085, 2118 |
| EciI | GGCGGA | 1 cut(s) | 999 |
| Eco130I | CCWWGG | 5 cut(s) | 375, 1422, 1478, 1668, 1847 |
| Eco24I | GRGCYC | 2 cut(s) | 478, 1422 |
| Eco47I | GGWCC | 4 cut(s) | 73, 663, 1782, 1933 |
| Eco57I | CTGAAG | 4 cut(s) | 600, 1084, 1572, 1731 |
| Eco81I | CCTNAGG | 1 cut(s) | 357 |
| Eco88I | CYCGRG | 2 cut(s) | 543, 671 |
| Eco91I | GGTNACC | 3 cut(s) | 805, 1107, 1581 |
| EcoO109I | RGGNCCY | 1 cut(s) | 475 |
| EcoO65I | GGTNACC | 3 cut(s) | 805, 1107, 1581 |
| EcoRII | CCWGG | 5 cut(s) | 97, 502, 762, 787, 1935 |
| EcoT14I | CCWWGG | 5 cut(s) | 375, 1422, 1478, 1668, 1847 |
| EcoT38I | GRGCYC | 2 cut(s) | 478, 1422 |
| EgeI | GGCGCC | 1 cut(s) | 1844 |
| EheI | GGCGCC | 1 cut(s) | 1844 |
| ErhI | CCWWGG | 5 cut(s) | 375, 1422, 1478, 1668, 1847 |
| Esp3I | CGTCTC | 1 cut(s) | 95 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 354, 386 |
| FaqI | GGGAC | 3 cut(s) | 20, 649, 688 |
| FauNDI | CATATG | 1 cut(s) | 1778 |
| FblI | GTMKAC | 2 cut(s) | 1062, 1295 |
| Fnu4HI | GCNGC | 5 cut(s) | 42, 68, 708, 817, 1634 |
| FokI | GGATG | 6 cut(s) | 307, 744, 1343, 1667, 1952, 1996 |
| FriOI | GRGCYC | 2 cut(s) | 478, 1422 |
| Fsp4HI | GCNGC | 5 cut(s) | 42, 68, 708, 817, 1634 |
| FspBI | CTAG | 1 cut(s) | 1170 |
| GlaI | GCGC | 2 cut(s) | 1595, 1844 |
| GluI | GCNGC | 5 cut(s) | 42, 68, 708, 817, 1634 |
| GsaI | CCCAGC | 1 cut(s) | 954 |
| GsuI | CTGGAG | 4 cut(s) | 465, 897, 960, 1658 |
| HaeII | RGCGCY | 2 cut(s) | 1597, 1846 |
| HapII | CCGG | 3 cut(s) | 203, 965, 1291 |
| HhaI | GCGC | 2 cut(s) | 1596, 1845 |
| Hin1I | GRCGYC | 2 cut(s) | 9, 1843 |
| Hin6I | GCGC | 2 cut(s) | 1594, 1843 |
| HinP1I | GCGC | 2 cut(s) | 1594, 1843 |
| HincII | GTYRAC | 1 cut(s) | 1288 |
| HindII | GTYRAC | 1 cut(s) | 1288 |
| HindIII | AAGCTT | 2 cut(s) | 230, 649 |
| HpaII | CCGG | 3 cut(s) | 203, 965, 1291 |
| HphI | GGTGA | 7 cut(s) | 113, 777, 803, 817, 1101, 1186, 1575 |
| Hpy166II | GTNNAC | 4 cut(s) | 625, 1063, 1288, 1296 |
| Hpy188I | TCNGA | 9 cut(s) | 53, 157, 264, 574, 744, 1122, 1340, 2066, 2143 |
| Hpy8I | GTNNAC | 4 cut(s) | 625, 1063, 1288, 1296 |
| Hpy99I | CGWCG | 1 cut(s) | 40 |
| HpyAV | CCTTC | 5 cut(s) | 1072, 1596, 1795, 1984, 2063 |
| HpyCH4III | ACNGT | 1 cut(s) | 260 |
| HpyCH4IV | ACGT | 3 cut(s) | 9, 677, 2136 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 41, 120, 371, 610, 1849 |
| HpyF3I | CTNAG | 7 cut(s) | 166, 357, 366, 615, 1872, 2016, 2063 |
| HpySE526I | ACGT | 3 cut(s) | 9, 677, 2136 |
| Hsp92I | GRCGYC | 2 cut(s) | 9, 1843 |
| HspAI | GCGC | 2 cut(s) | 1594, 1843 |
| KasI | GGCGCC | 1 cut(s) | 1842 |
| Kzo9I | GATC | 8 cut(s) | 304, 466, 547, 1117, 1398, 1711, 1819, 1966 |
| LmnI | GCTCC | 3 cut(s) | 157, 1375, 1417 |
| Lsp1109I | GCAGC | 4 cut(s) | 79, 694, 828, 1645 |
| LweI | GCATC | 4 cut(s) | 285, 586, 735, 832 |
| MabI | ACCWGGT | 1 cut(s) | 787 |
| MaeI | CTAG | 1 cut(s) | 1170 |
| MaeII | ACGT | 3 cut(s) | 9, 677, 2136 |
| MaeIII | GTNAC | 6 cut(s) | 408, 805, 1107, 1514, 1581, 1741 |
| MalI | GATC | 8 cut(s) | 306, 468, 549, 1119, 1400, 1713, 1821, 1968 |
| MboI | GATC | 8 cut(s) | 304, 466, 547, 1117, 1398, 1711, 1819, 1966 |
| MfeI | CAATTG | 1 cut(s) | 927 |
| MflI | RGATCY | 1 cut(s) | 1711 |
| MhlI | GDGCHC | 2 cut(s) | 478, 1422 |
| MlsI | TGGCCA | 1 cut(s) | 686 |
| MluCI | AATT | 7 cut(s) | 151, 183, 252, 398, 927, 1145, 2045 |
| MluNI | TGGCCA | 1 cut(s) | 686 |
| Mly113I | GGCGCC | 1 cut(s) | 1843 |
| MlyI | GAGTC | 4 cut(s) | 158, 379, 1186, 1861 |
| Mox20I | TGGCCA | 1 cut(s) | 686 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1223, 1622, 1769 |
| MscI | TGGCCA | 1 cut(s) | 686 |
| MseI | TTAA | 3 cut(s) | 735, 903, 1281 |
| Msp20I | TGGCCA | 1 cut(s) | 686 |
| MspA1I | CMGCKG | 3 cut(s) | 70, 1104, 1636 |
| MspI | CCGG | 3 cut(s) | 203, 965, 1291 |
| MspR9I | CCNGG | 6 cut(s) | 99, 203, 504, 764, 789, 1937 |
| MunI | CAATTG | 1 cut(s) | 927 |
| MvaI | CCWGG | 5 cut(s) | 99, 504, 764, 789, 1937 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 41, 120, 371, 610, 1849 |
| NarI | GGCGCC | 1 cut(s) | 1843 |
| NciI | CCSGG | 1 cut(s) | 203 |
| NcoI | CCATGG | 1 cut(s) | 1668 |
| NdeI | CATATG | 1 cut(s) | 1778 |
| NdeII | GATC | 8 cut(s) | 304, 466, 547, 1117, 1398, 1711, 1819, 1966 |
| NlaIV | GGNNCC | 8 cut(s) | 210, 476, 477, 665, 724, 1419, 1713, 1844 |
| NmeAIII | GCCGAG | 2 cut(s) | 1705, 1954 |
| NmuCI | GTSAC | 6 cut(s) | 408, 805, 1107, 1514, 1581, 1741 |
| NspI | RCATGY | 1 cut(s) | 433 |
| PagI | TCATGA | 2 cut(s) | 453, 1753 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 745 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1223, 1622, 1769 |
| PfeI | GAWTC | 8 cut(s) | 48, 54, 80, 511, 559, 1123, 1219, 1341 |
| PinAI | ACCGGT | 1 cut(s) | 1290 |
| PkrI | GCNGC | 5 cut(s) | 43, 69, 709, 818, 1635 |
| PleI | GAGTC | 4 cut(s) | 158, 379, 1185, 1861 |
| PluTI | GGCGCC | 1 cut(s) | 1846 |
| PpsI | GAGTC | 4 cut(s) | 158, 379, 1185, 1861 |
| PsiI | TTATAA | 1 cut(s) | 1601 |
| Psp6I | CCWGG | 5 cut(s) | 97, 502, 762, 787, 1935 |
| PspEI | GGTNACC | 3 cut(s) | 805, 1107, 1581 |
| PspFI | CCCAGC | 1 cut(s) | 950 |
| PspGI | CCWGG | 5 cut(s) | 97, 502, 762, 787, 1935 |
| PspN4I | GGNNCC | 8 cut(s) | 210, 476, 477, 665, 724, 1419, 1713, 1844 |
| PspOMI | GGGCCC | 1 cut(s) | 474 |
| PstI | CTGCAG | 1 cut(s) | 1741 |
| PsuI | RGATCY | 1 cut(s) | 1711 |
| PvuII | CAGCTG | 3 cut(s) | 70, 1104, 1636 |
| RsaI | GTAC | 6 cut(s) | 224, 497, 937, 1250, 1910, 2099 |
| RsaNI | GTAC | 6 cut(s) | 223, 496, 936, 1249, 1909, 2098 |
| SaqAI | TTAA | 3 cut(s) | 735, 903, 1281 |
| SatI | GCNGC | 5 cut(s) | 42, 68, 708, 817, 1634 |
| Sau3AI | GATC | 8 cut(s) | 304, 466, 547, 1117, 1398, 1711, 1819, 1966 |
| SchI | GAGTC | 4 cut(s) | 158, 379, 1186, 1861 |
| ScrFI | CCNGG | 6 cut(s) | 99, 203, 504, 764, 789, 1937 |
| SduI | GDGCHC | 2 cut(s) | 478, 1422 |
| SexAI | ACCWGGT | 1 cut(s) | 787 |
| SfaNI | GCATC | 4 cut(s) | 285, 586, 735, 832 |
| SfcI | CTRYAG | 2 cut(s) | 811, 1737 |
| SfoI | GGCGCC | 1 cut(s) | 1844 |
| SinI | GGWCC | 4 cut(s) | 73, 663, 1782, 1933 |
| SmlI | CTYRAG | 1 cut(s) | 1379 |
| SmoI | CTYRAG | 1 cut(s) | 1379 |
| Sse9I | AATT | 7 cut(s) | 151, 183, 252, 398, 927, 1145, 2045 |
| SsiI | CCGC | 3 cut(s) | 41, 984, 2026 |
| SspDI | GGCGCC | 1 cut(s) | 1842 |
| SspI | AATATT | 1 cut(s) | 800 |
| SspMI | CTAG | 1 cut(s) | 1170 |
| StyD4I | CCNGG | 6 cut(s) | 97, 201, 502, 762, 787, 1935 |
| StyI | CCWWGG | 5 cut(s) | 375, 1422, 1478, 1668, 1847 |
| TaaI | ACNGT | 1 cut(s) | 260 |
| TaiI | ACGT | 3 cut(s) | 12, 680, 2139 |
| TaqI | TCGA | 4 cut(s) | 57, 78, 342, 1365 |
| TasI | AATT | 7 cut(s) | 151, 183, 252, 398, 927, 1145, 2045 |
| TatI | WGTACW | 2 cut(s) | 1248, 1908 |
| TauI | GCSGC | 1 cut(s) | 44 |
| TfiI | GAWTC | 8 cut(s) | 48, 54, 80, 511, 559, 1123, 1219, 1341 |
| Tru1I | TTAA | 3 cut(s) | 735, 903, 1281 |
| Tru9I | TTAA | 3 cut(s) | 735, 903, 1281 |
| TscAI | CASTG | 3 cut(s) | 1234, 1240, 1746 |
| TseFI | GTSAC | 6 cut(s) | 408, 805, 1107, 1514, 1581, 1741 |
| TseI | GCWGC | 4 cut(s) | 67, 707, 816, 1633 |
| Tsp45I | GTSAC | 6 cut(s) | 408, 805, 1107, 1514, 1581, 1741 |
| TspGWI | ACGGA | 2 cut(s) | 483, 659 |
| TspRI | CASTG | 3 cut(s) | 1234, 1240, 1746 |
| VpaK11BI | GGWCC | 4 cut(s) | 73, 663, 1782, 1933 |
| XapI | RAATTY | 2 cut(s) | 151, 252 |
| XceI | RCATGY | 1 cut(s) | 433 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1369 |
| XmiI | GTMKAC | 2 cut(s) | 1062, 1295 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1223, 1622, 1769 |
| XspI | CTAG | 1 cut(s) | 1170 |
| ZraI | GACGTC | 1 cut(s) | 10 |