RLG00000025930

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0011162
Physical Location & Seq
Forward (+)
49285713 .. 49289673
3961 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025930

Sequence Viewer

Length: 2016 bp
ATGGCGGACGTGATGGTGATGAACGATATAGAGGCGACGGCGGCTCGTCTCGGAATTGACCTCTCGCAGTTGGACCTAGACTCAATCCGTCTCCCTCACGGCGAAACCTGCGGGATTCCAAGTGACGATGAAGATATCGGTCACGATGCGAATTCGGAGATGGAGTCTGGGTTTGGGAACATCATCGTTGTCGATAACCTGCCGGTGGTGCCAATTGAGAAGTTCGAGAAGCTTGAAAACGTGATTCGGAAAATTTACAGTCAGCTTGGTGTGATCAAGGAAGATGGATTCTGGATGCCTCTCGAACCCGAAACGCAGAAGACTATGGGCTATTGCTTCATCGAATTCAATACTCCTCAGGAAGCTGAGCTTGCCAGGGAGAAGACTCATGGATACAAGCTGGACAGATCACACATTTTCGCTGTCAGCATGTTTGATGACTTTGATCGTTTCATGAAAGTTCCTGATCAGTGGGCTCCGCCCGAAACTAAGCCATATACTCCAGGGGAAAATCTTCAGAATTGGCTCACTGATTTAAAAGGCCGGGATCAATTTGTCATCCGTGCTGGTAATGATACTGAAGTTTATTGGAATGATGCACGACAATTGAAGCCTGATTTTGTTTACAAGCGTCAAGTTAGACTGATTGATTTTTCCCCTGGTGAGAAATATTTGGTGACCTACAGCAGCCATGAAGCAAGCAATCCCCGCGACACAAATAGGGTTGTCATTGACATTTTTGATGTGAGAACTGGAAAAGTTATGAGAGATTTTAAGGGAACTCCTGATGATTTTGCAATTGGAGGAACTGGAGGTGTTTCGGGCGTGTCTTGGCCTGTGTTCAAATGGGGTGGCGGAAAAGATGACAAGTACTTTGCCAGAATGGGAAAGAGTGCTATATCTGTTTATGAGACAGAAACATTTTCACTTGTAGACAAAAAATCTATCAAAGTTGAGAATGTTATGGACTTCAGTTGGTCACCAACTGATTCAATTCTTGCTCTTTTTGTTCCTGAATTGGGCGGTGGGAACCAACCTGCTAGGGTGAGTCTTATTCAAATCCCCAGTAAAGAGGAGTTAAGACAGAAGAATCTTTTCAGTGTTAGTGATTGCAAGATGTACTGGCAAAGCAATGGGGAGTATCTTGCTGTTAAAGTTGATCGTTATACGAAAACGAAAAAAAGTACATATACTGGATTTGAACTTTTCCGAATCAAGGAGCGAGATATCCCTATTGAAGTTTTAGAGCTTGAGAATAAGAATGACAAGATCATTGCATTTGCTTGGGAGCCTAAGGGACATAGATTTGCAATTATTCATGGTGACACTCCAAGGCCTGATATAAGCTTCTACTCAATGCGTACTGCTCACAATACAGGCCGTGTGTCAAAGCTTATTACTCTTAAAGGCAAGCAGGCGAATGCTCTTTCCTGGTCACCTTCAGGGCGCTTTATAATTCTTGCAGGATTGAAGGGTTTGAACGGGCAGTTGGAATTTTACAACGTGGATGAGCAAGAAACGATGGCGACAACTGAGCATTTTATGGCGACAGATATTGAATGGGATCCTACTGGAAGATATGTTGCTACTGCGGTTACTTCAGTTCATGAGATGGAGAATGGTTATATTATATGGACCTTCAATGGCAAGCTACTTTATCGGGTATTAAAGGATCATTTCTTCCAGTTTTTGTGGCGTCCAAGGCCAGCATCTTTCCTGACTCCTGAGCAAGAGGAGGAGATTGCAAAGAACTTGAAAAAGTATAGCAAAAGATATGAGCTCGAGGATAATGATGTGGAAAAGCAACTGAGCGAGCAGGAGCGTGCAAAGAGGAGAGAGTTGAAGGAAGAATGGGATAAGTGGGTCGCTGAGTGGAAGCGGTTGTGCGAAGAAGAAAAAATGGATAGGCAGAGGCTCAGGGATGGAGAAGCCAGTGATGAAGAGGAGGAGTACGAGGCTAGAGAGGTTGAAGTAGAGGAAGTGGTGAGTACTCAAGAGGAGGTTCTTTCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0032991 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
RRM_1 eIF2A

Protein Analysis

672

Amino Acids

77.45

Weight (kDa)

5.01

Isoelectric Point (pI)

32.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 79 - 136 4.8e-06 RNA recognition motif
eIF2A PF08662 363 - 563 2e-62 Eukaryotic translation initiation factor eIF2A
Beta-prop_THOC3 PF25174 421 - 547 1e-06 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25780 AT5G27640 AT5G27640 AT5G27640
fragaria_vesca FvH4_6g00800
malus_domestica MD04G1241100.v1.1 MD12G1258100.v1.1
prunus_persica Prupe.6G358600_v2.0.a1
pyrus_communis pycom04g21280 pycom12g23670
rosa_chinensis RchiOBHm_Chr3g0448281
rosa_laevigata RLG00000025930
rosa_multiflora Rmu_sc0005582.1_g000005
rosa_roxburghii Rroxscaffold_6G00426430
rosa_rugosa Rorug02G0610000
rosa_samantha Rh3AG009600 Rh3BG009200 Rh3CG009200 Rh3DG009800
rosa_wichuraiana Rw3G000780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1454
Acc36I ACCTGC 3 cut(s) 116, 207, 1045
AccB1I GGYRCC 1 cut(s) 208
AccI GTMKAC 1 cut(s) 933
AccII CGCG 1 cut(s) 711
AciI CCGC 9 cut(s) 5, 41, 111, 479, 709, 855, 1023, 1592, 1879
AclWI GGATC 4 cut(s) 555, 1559, 1572, 1680
AcsI RAATTY 4 cut(s) 151, 252, 344, 1493
AcuI CTGAAG 5 cut(s) 500, 600, 955, 1425, 1584
AcyI GRCGYC 1 cut(s) 1696
AfaI GTAC 6 cut(s) 872, 1121, 1186, 1363, 1952, 1990
AfiI CCNNNNNNNGG 3 cut(s) 205, 1019, 1216
AjiI CACGTC 1 cut(s) 10
AjnI CCWGG 4 cut(s) 374, 502, 658, 1430
AjuI GAANNNNNNNTTGG 2 cut(s) 1472, 1504
Alw21I GWGCWC 1 cut(s) 1782
Alw26I GTCTC 3 cut(s) 53, 95, 905
AlwI GGATC 4 cut(s) 555, 1559, 1572, 1680
Ama87I CYCGRG 1 cut(s) 1781
AoxI GGCC 5 cut(s) 541, 833, 1334, 1378, 1703
ApeKI GCWGC 1 cut(s) 687
ApoI RAATTY 4 cut(s) 151, 252, 344, 1493
ArsI GACNNNNNNTTYG 2 cut(s) 857, 889
Asp700I GAANNNNTTC 2 cut(s) 513, 1094
AspLEI GCGC 1 cut(s) 1449
AspS9I GGNCC 2 cut(s) 73, 1635
AsuC2I CCSGG 1 cut(s) 545
AsuHPI GGTGA 8 cut(s) 28, 674, 688, 972, 1057, 1334, 1428, 1996
AvaI CYCGRG 1 cut(s) 1781
AvaII GGWCC 2 cut(s) 73, 1635
AxyI CCTNAGG 2 cut(s) 357, 1293
BaeI ACNNNNGTAYC 2 cut(s) 567, 600
BamHI GGATCC 1 cut(s) 1564
BanI GGYRCC 1 cut(s) 208
BanII GRGCYC 2 cut(s) 478, 1782
BbsI GAAGAC 2 cut(s) 326, 389
Bbv12I GWGCWC 1 cut(s) 1782
BbvI GCAGC 1 cut(s) 699
BccI CCATC 6 cut(s) 7, 154, 278, 1516, 1606, 1916
BceAI ACGGC 3 cut(s) 54, 115, 1365
BciT130I CCWGG 4 cut(s) 376, 504, 660, 1432
BciVI GTATCC 1 cut(s) 386
BclI TGATCA 2 cut(s) 273, 466
BcnI CCSGG 1 cut(s) 545
BcoDI GTCTC 3 cut(s) 53, 95, 905
BfaI CTAG 3 cut(s) 77, 1041, 1959
BfmI CTRYAG 1 cut(s) 682
BfoI RGCGCY 1 cut(s) 1450
BfuAI ACCTGC 3 cut(s) 116, 207, 1045
BfuI GTATCC 1 cut(s) 386
BisI GCNGC 2 cut(s) 42, 688
BlpI GCTNAGC 1 cut(s) 366
BlsI GCNGC 2 cut(s) 43, 689
BmcAI AGTACT 2 cut(s) 872, 1990
Bme1390I CCNGG 5 cut(s) 376, 504, 545, 660, 1432
Bme18I GGWCC 2 cut(s) 73, 1635
BmeT110I CYCGRG 1 cut(s) 1781
BmgBI CACGTC 1 cut(s) 10
BmgT120I GGNCC 2 cut(s) 73, 1635
BmiI GGNNCC 5 cut(s) 210, 477, 1031, 1290, 1566
BmrFI CCNGG 5 cut(s) 376, 504, 545, 660, 1432
BmrI ACTGGG 1 cut(s) 1059
BmsI GCATC 4 cut(s) 136, 285, 586, 1718
BmuI ACTGGG 1 cut(s) 1059
BpiI GAAGAC 2 cut(s) 326, 389
BpmI CTGGAG 2 cut(s) 486, 831
Bpu10I CCTNAGC 2 cut(s) 1725, 1916
Bpu1102I GCTNAGC 1 cut(s) 366
BpuEI CTTGAG 2 cut(s) 1271, 1977
BpuMI CCSGG 1 cut(s) 545
BsaHI GRCGYC 1 cut(s) 1696
BsaJI CCNNGG 5 cut(s) 375, 503, 658, 1331, 1700
BsaXI ACNNNNNCTCC 4 cut(s) 149, 155, 179, 185
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 1019, 1216
Bse118I RCCGGY 1 cut(s) 202
Bse1I ACTGG 8 cut(s) 757, 814, 1065, 1127, 1198, 1576, 1684, 1932
Bse21I CCTNAGG 2 cut(s) 357, 1293
Bse3DI GCAATG 2 cut(s) 1138, 1272
BseBI CCWGG 4 cut(s) 376, 504, 660, 1432
BseDI CCNNGG 5 cut(s) 375, 503, 658, 1331, 1700
BseGI GGATG 4 cut(s) 300, 558, 1513, 1927
BseLI CCNNNNNNNGG 3 cut(s) 205, 1019, 1216
BseMI GCAATG 2 cut(s) 1138, 1272
BseMII CTCAG 7 cut(s) 357, 371, 1524, 1716, 1799, 1860, 1930
BseNI ACTGG 8 cut(s) 757, 814, 1065, 1127, 1198, 1576, 1684, 1932
BseRI GAGGAG 8 cut(s) 345, 1088, 1748, 1751, 1846, 1958, 1961, 2012
BseXI GCAGC 1 cut(s) 699
Bsh1236I CGCG 1 cut(s) 711
BshFI GGCC 5 cut(s) 543, 835, 1336, 1380, 1705
BshNI GGYRCC 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 1782
BsiHKCI CYCGRG 1 cut(s) 1781
BsiSI CCGG 2 cut(s) 203, 544
BslFI GGGAC 1 cut(s) 1311
BslI CCNNNNNNNGG 3 cut(s) 205, 1019, 1216
BsmAI GTCTC 3 cut(s) 53, 95, 905
BsmBI CGTCTC 2 cut(s) 53, 95
BsmFI GGGAC 1 cut(s) 1311
BsmI GAATGC 1 cut(s) 1426
BsnI GGCC 5 cut(s) 543, 835, 1336, 1380, 1705
BsoBI CYCGRG 1 cut(s) 1781
Bsp1286I GDGCHC 2 cut(s) 478, 1782
Bsp143I GATC 9 cut(s) 273, 407, 445, 466, 547, 1159, 1269, 1564, 1672
Bsp1720I GCTNAGC 1 cut(s) 366
BspACI CCGC 9 cut(s) 5, 41, 111, 479, 709, 855, 1023, 1592, 1879
BspANI GGCC 5 cut(s) 543, 835, 1336, 1380, 1705
BspCNI CTCAG 7 cut(s) 358, 370, 1525, 1717, 1800, 1861, 1929
BspFNI CGCG 1 cut(s) 711
BspHI TCATGA 2 cut(s) 453, 1606
BspLI GGNNCC 5 cut(s) 210, 477, 1031, 1290, 1566
BspMI ACCTGC 3 cut(s) 116, 207, 1045
BspPI GGATC 4 cut(s) 555, 1559, 1572, 1680
BspT107I GGYRCC 1 cut(s) 208
BsrDI GCAATG 2 cut(s) 1138, 1272
BsrFI RCCGGY 1 cut(s) 202
BsrI ACTGG 8 cut(s) 757, 814, 1065, 1127, 1198, 1576, 1684, 1932
BssAI RCCGGY 1 cut(s) 202
BssECI CCNNGG 5 cut(s) 375, 503, 658, 1331, 1700
BssMI GATC 9 cut(s) 273, 407, 445, 466, 547, 1159, 1269, 1564, 1672
BssNI GRCGYC 1 cut(s) 1696
BssT1I CCWWGG 2 cut(s) 1331, 1700
Bst2UI CCWGG 4 cut(s) 376, 504, 660, 1432
Bst4CI ACNGT 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 1935
BstACI GRCGYC 1 cut(s) 1696
BstC8I GCNNGC 8 cut(s) 372, 700, 1412, 1416, 1649, 1707, 1814, 1824
BstDEI CTNAG 9 cut(s) 357, 366, 489, 1293, 1533, 1725, 1808, 1869, 1916
BstEII GGTNACC 3 cut(s) 676, 978, 1434
BstF5I GGATG 4 cut(s) 300, 558, 1513, 1927
BstFNI CGCG 1 cut(s) 711
BstH2I RGCGCY 1 cut(s) 1450
BstHHI GCGC 1 cut(s) 1449
BstKTI GATC 9 cut(s) 276, 410, 448, 469, 550, 1162, 1272, 1567, 1675
BstMAI GTCTC 3 cut(s) 53, 95, 905
BstMBI GATC 9 cut(s) 273, 407, 445, 466, 547, 1159, 1269, 1564, 1672
BstMWI GCNNNNNNNGC 6 cut(s) 41, 108, 208, 371, 708, 1702
BstNI CCWGG 4 cut(s) 376, 504, 660, 1432
BstNSI RCATGY 1 cut(s) 433
BstPI GGTNACC 3 cut(s) 676, 978, 1434
BstSCI CCNGG 5 cut(s) 374, 502, 543, 658, 1430
BstSFI CTRYAG 1 cut(s) 682
BstUI CGCG 1 cut(s) 711
BstV1I GCAGC 1 cut(s) 699
BstV2I GAAGAC 2 cut(s) 326, 389
BstX2I RGATCY 1 cut(s) 1564
BstYI RGATCY 1 cut(s) 1564
Bsu36I CCTNAGG 2 cut(s) 357, 1293
BsuI GTATCC 1 cut(s) 386
BsuRI GGCC 5 cut(s) 543, 835, 1336, 1380, 1705
BtrI CACGTC 1 cut(s) 10
BtsCI GGATG 4 cut(s) 300, 558, 1513, 1927
BtsIMutI CAGTG 4 cut(s) 476, 528, 1105, 1939
BveI ACCTGC 3 cut(s) 116, 207, 1045
Cac8I GCNNGC 8 cut(s) 372, 700, 1412, 1416, 1649, 1707, 1814, 1824
CciI TCATGA 2 cut(s) 453, 1606
CfoI GCGC 1 cut(s) 1449
Cfr10I RCCGGY 1 cut(s) 202
Cfr13I GGNCC 2 cut(s) 73, 1635
CseI GACGC 2 cut(s) 620, 1685
Csp6I GTAC 6 cut(s) 871, 1120, 1185, 1362, 1951, 1989
CspCI CAANNNNNGTGG 2 cut(s) 832, 867
CviAII CATG 6 cut(s) 389, 430, 454, 692, 1319, 1607
CviQI GTAC 6 cut(s) 871, 1120, 1185, 1362, 1951, 1989
DdeI CTNAG 9 cut(s) 357, 366, 489, 1293, 1533, 1725, 1808, 1869, 1916
DpnI GATC 9 cut(s) 275, 409, 447, 468, 549, 1161, 1271, 1566, 1674
DpnII GATC 9 cut(s) 273, 407, 445, 466, 547, 1159, 1269, 1564, 1672
DraI TTTAAA 1 cut(s) 537
Eam1104I CTCTTC 1 cut(s) 1935
EarI CTCTTC 1 cut(s) 1935
EciI GGCGGA 3 cut(s) 20, 468, 870
Ecl136II GAGCTC 1 cut(s) 1780
Eco130I CCWWGG 2 cut(s) 1331, 1700
Eco147I AGGCCT 1 cut(s) 1336
Eco24I GRGCYC 2 cut(s) 478, 1782
Eco32I GATATC 2 cut(s) 136, 1228
Eco47I GGWCC 2 cut(s) 73, 1635
Eco53kI GAGCTC 1 cut(s) 1780
Eco57I CTGAAG 5 cut(s) 500, 600, 955, 1425, 1584
Eco81I CCTNAGG 2 cut(s) 357, 1293
Eco88I CYCGRG 1 cut(s) 1781
Eco91I GGTNACC 3 cut(s) 676, 978, 1434
EcoICRI GAGCTC 1 cut(s) 1780
EcoO65I GGTNACC 3 cut(s) 676, 978, 1434
EcoRI GAATTC 2 cut(s) 151, 344
EcoRII CCWGG 4 cut(s) 374, 502, 658, 1430
EcoRV GATATC 2 cut(s) 136, 1228
EcoT14I CCWWGG 2 cut(s) 1331, 1700
EcoT38I GRGCYC 2 cut(s) 478, 1782
ErhI CCWWGG 2 cut(s) 1331, 1700
Esp3I CGTCTC 2 cut(s) 53, 95
FaeI CATG 6 cut(s) 392, 433, 457, 695, 1322, 1610
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FaqI GGGAC 1 cut(s) 1311
FatI CATG 6 cut(s) 388, 429, 453, 691, 1318, 1606
FauI CCCGC 2 cut(s) 104, 716
FbaI TGATCA 2 cut(s) 273, 466
FblI GTMKAC 1 cut(s) 933
Fnu4HI GCNGC 2 cut(s) 42, 688
FokI GGATG 4 cut(s) 307, 545, 1520, 1934
FriOI GRGCYC 2 cut(s) 478, 1782
Fsp4HI GCNGC 2 cut(s) 42, 688
FspBI CTAG 3 cut(s) 77, 1041, 1959
GlaI GCGC 1 cut(s) 1448
GluI GCNGC 2 cut(s) 42, 688
GsuI CTGGAG 2 cut(s) 486, 831
HaeII RGCGCY 1 cut(s) 1450
HaeIII GGCC 5 cut(s) 543, 835, 1336, 1380, 1705
HapII CCGG 2 cut(s) 203, 544
HgaI GACGC 2 cut(s) 620, 1685
HhaI GCGC 1 cut(s) 1449
Hin1I GRCGYC 1 cut(s) 1696
Hin1II CATG 6 cut(s) 392, 433, 457, 695, 1322, 1610
Hin6I GCGC 1 cut(s) 1447
HinP1I GCGC 1 cut(s) 1447
HindIII AAGCTT 3 cut(s) 230, 1345, 1391
HpaII CCGG 2 cut(s) 203, 544
HphI GGTGA 8 cut(s) 28, 674, 688, 972, 1057, 1334, 1428, 1996
Hpy166II GTNNAC 2 cut(s) 625, 934
Hpy188I TCNGA 6 cut(s) 53, 157, 249, 519, 1211, 2011
Hpy8I GTNNAC 2 cut(s) 625, 934
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 4 cut(s) 1449, 1465, 1648, 1837
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 3 cut(s) 9, 240, 1503
HpyCH4V TGCA 8 cut(s) 599, 797, 1113, 1277, 1310, 1463, 1745, 1826
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 108, 208, 371, 708, 1702
HpyF3I CTNAG 9 cut(s) 357, 366, 489, 1293, 1533, 1725, 1808, 1869, 1916
HpySE526I ACGT 3 cut(s) 9, 240, 1503
Hsp92I GRCGYC 1 cut(s) 1696
Hsp92II CATG 6 cut(s) 392, 433, 457, 695, 1322, 1610
HspAI GCGC 1 cut(s) 1447
Ksp22I TGATCA 2 cut(s) 273, 466
Kzo9I GATC 9 cut(s) 273, 407, 445, 466, 547, 1159, 1269, 1564, 1672
LmnI GCTCC 4 cut(s) 481, 1219, 1288, 1819
Lsp1109I GCAGC 1 cut(s) 699
LweI GCATC 4 cut(s) 136, 285, 586, 1718
MaeI CTAG 3 cut(s) 77, 1041, 1959
MaeII ACGT 3 cut(s) 9, 240, 1503
MaeIII GTNAC 7 cut(s) 122, 140, 676, 978, 1322, 1434, 1594
MalI GATC 9 cut(s) 275, 409, 447, 468, 549, 1161, 1271, 1566, 1674
MboI GATC 9 cut(s) 273, 407, 445, 466, 547, 1159, 1269, 1564, 1672
MfeI CAATTG 3 cut(s) 213, 605, 798
MflI RGATCY 1 cut(s) 1564
MhlI GDGCHC 2 cut(s) 478, 1782
MlyI GAGTC 5 cut(s) 74, 173, 379, 1057, 1714
MmeI TCCRAC 2 cut(s) 51, 1470
MroXI GAANNNNTTC 2 cut(s) 513, 1094
MseI TTAA 6 cut(s) 536, 774, 1079, 1152, 1404, 1667
MspI CCGG 2 cut(s) 203, 544
MspR9I CCNGG 5 cut(s) 376, 504, 545, 660, 1432
MunI CAATTG 3 cut(s) 213, 605, 798
Mva1269I GAATGC 1 cut(s) 1426
MvaI CCWGG 4 cut(s) 376, 504, 660, 1432
MvnI CGCG 1 cut(s) 711
MwoI GCNNNNNNNGC 6 cut(s) 41, 108, 208, 371, 708, 1702
NciI CCSGG 1 cut(s) 545
NdeII GATC 9 cut(s) 273, 407, 445, 466, 547, 1159, 1269, 1564, 1672
NlaIII CATG 6 cut(s) 392, 433, 457, 695, 1322, 1610
NlaIV GGNNCC 5 cut(s) 210, 477, 1031, 1290, 1566
NmuCI GTSAC 6 cut(s) 122, 140, 676, 978, 1322, 1434
NspI RCATGY 1 cut(s) 433
PaeR7I CTCGAG 1 cut(s) 1781
PagI TCATGA 2 cut(s) 453, 1606
PceI AGGCCT 1 cut(s) 1336
PctI GAATGC 1 cut(s) 1426
PdmI GAANNNNTTC 2 cut(s) 513, 1094
PfeI GAWTC 6 cut(s) 115, 244, 288, 989, 1090, 1212
PkrI GCNGC 2 cut(s) 43, 689
PleI GAGTC 5 cut(s) 74, 172, 379, 1056, 1714
PpsI GAGTC 5 cut(s) 74, 172, 379, 1056, 1714
PsiI TTATAA 1 cut(s) 1454
Psp124BI GAGCTC 1 cut(s) 1782
Psp6I CCWGG 4 cut(s) 374, 502, 658, 1430
PspEI GGTNACC 3 cut(s) 676, 978, 1434
PspGI CCWGG 4 cut(s) 374, 502, 658, 1430
PspN4I GGNNCC 5 cut(s) 210, 477, 1031, 1290, 1566
PspPI GGNCC 2 cut(s) 73, 1635
PspXI VCTCGAGB 1 cut(s) 1781
PsuI RGATCY 1 cut(s) 1564
RsaI GTAC 6 cut(s) 872, 1121, 1186, 1363, 1952, 1990
RsaNI GTAC 6 cut(s) 871, 1120, 1185, 1362, 1951, 1989
SacI GAGCTC 1 cut(s) 1782
SaqAI TTAA 6 cut(s) 536, 774, 1079, 1152, 1404, 1667
SatI GCNGC 2 cut(s) 42, 688
Sau3AI GATC 9 cut(s) 273, 407, 445, 466, 547, 1159, 1269, 1564, 1672
Sau96I GGNCC 2 cut(s) 73, 1635
ScaI AGTACT 2 cut(s) 872, 1990
SchI GAGTC 5 cut(s) 74, 173, 379, 1057, 1714
ScrFI CCNGG 5 cut(s) 376, 504, 545, 660, 1432
SduI GDGCHC 2 cut(s) 478, 1782
SfaNI GCATC 4 cut(s) 136, 285, 586, 1718
SfcI CTRYAG 1 cut(s) 682
Sfr274I CTCGAG 1 cut(s) 1781
SinI GGWCC 2 cut(s) 73, 1635
SlaI CTCGAG 1 cut(s) 1781
SmlI CTYRAG 3 cut(s) 1250, 1781, 1992
SmoI CTYRAG 3 cut(s) 1250, 1781, 1992
SseBI AGGCCT 1 cut(s) 1336
SsiI CCGC 9 cut(s) 5, 41, 111, 479, 709, 855, 1023, 1592, 1879
SspI AATATT 1 cut(s) 671
SspMI CTAG 3 cut(s) 77, 1041, 1959
SstI GAGCTC 1 cut(s) 1782
StuI AGGCCT 1 cut(s) 1336
StyD4I CCNGG 5 cut(s) 374, 502, 543, 658, 1430
StyI CCWWGG 2 cut(s) 1331, 1700
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 3 cut(s) 12, 243, 1506
TaqI TCGA 5 cut(s) 192, 225, 303, 342, 1782
TaqII GACCGA 1 cut(s) 128
TatI WGTACW 4 cut(s) 870, 1119, 1184, 1988
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 6 cut(s) 115, 244, 288, 989, 1090, 1212
Tru1I TTAA 6 cut(s) 536, 774, 1079, 1152, 1404, 1667
Tru9I TTAA 6 cut(s) 536, 774, 1079, 1152, 1404, 1667
TscAI CASTG 4 cut(s) 476, 535, 1105, 1939
TseFI GTSAC 6 cut(s) 122, 140, 676, 978, 1322, 1434
TseI GCWGC 1 cut(s) 687
Tsp45I GTSAC 6 cut(s) 122, 140, 676, 978, 1322, 1434
TspDTI ATGAA 9 cut(s) 35, 144, 328, 442, 470, 708, 1307, 1595, 1953
TspGWI ACGGA 2 cut(s) 77, 551
TspRI CASTG 4 cut(s) 476, 535, 1105, 1939
VpaK11BI GGWCC 2 cut(s) 73, 1635
XapI RAATTY 4 cut(s) 151, 252, 344, 1493
XceI RCATGY 1 cut(s) 433
XhoI CTCGAG 1 cut(s) 1781
XmiI GTMKAC 1 cut(s) 933
XmnI GAANNNNTTC 2 cut(s) 513, 1094
XspI CTAG 3 cut(s) 77, 1041, 1959
ZrmI AGTACT 2 cut(s) 872, 1990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.