Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012638

Physical Location & Seq

Genomic Coordinates Forward (+)

13174955 .. 13177941

Gene Structure 2987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G101800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGCAAAGCCCAGCAGAGAAAAGAGCAGGAGTGTACACCTACATAAGCCAGTGGCCAATCTACTCCTTAGCTTGGTCAGTCCGTCATGACAAGCCCTCACGCCTTGCCATAGGCAGCTTCATTGAAGACTACAGCAATAAGGTTGAGCTAGTCCAATTCAACCGGGACACCTCCGATTTTGCTACTGATAACCGCCTAATTTTCGACCACCCTTACGCACCCACCAACCTCATGTTCTTCCCCTCCAAGGACCCTTCAAACCCCGACCTGATCGCCACGTCCGGCGACTACTTGAGGCTATGGGAGATCCATGATGACAGAATTGAGCTCAAGTCCCTGCTCAATGGGAACAGTAGCAGTGAATTTAATTCGGCTATAACATCTTTTGATTGGGCTGAGTGTGACACTAAGCGTGTGGCCACGTCTAGTGTGGACACTACATGCACAATTTGGGACATTGAGAGGGAAGCTGTGGACACTCAGTTGGTGGCTCATGATAAAGAAGTGTATGACATTTCTTGGGGTGGCTTCAATGTGTTTGCCTCAGCTTCTGGGGATGGCACTGTCAGGGTCTTTGATTTGAGGGACAAAGAGAGATCAACCATAGTGTATGAAAACCCATCTCAAGATGGGTCCTTGCTGAGGCTGGAATGGAACAAGCAAGACCCAAGATTCATTGCCACAGTGGGCATGGACAGCAACAAAGTCGTGATATTGGACATCAGATTTCCTACAGCTCCTCTCATGGAGCTTAAAAAGCACGGATCCAGTGTGAACGCCATTTCCTGGTCCCCAGGTATGGGCCACCAGATATGTTCTGTGAGTGATGATTCAAGGGCTATGATTTGGGAGGTGGTCAAACCTGGGGTTCAATCGGACGGTGGTGGGAATGTGGAGCCAGAGATGTGGTATGGAGCGACGGCTCAGATTAACCAAGTGCGTTGGTCTGCTGTGGAGGTGGATTGGATTGCTATTGCCTTCTTGAATAAGTTGCAGGTCTTGAAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

337

Amino Acids

37.85

Weight (kDa)

4.83

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19450
malus_domestica	MD12G1030700.v1.1 MD14G1031200.v1.1
prunus_persica	Prupe.7G101800_v2.0.a1
pyrus_communis	pycom12g02860 pycom14g02810
rosa_chinensis	RchiOBHm_Chr3g0474771
rosa_multiflora	Rmu_co8493269.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406870
rosa_rugosa	Rorug03G0143300 Rorug03G0143300 Rorug03G0143300 Rorug03G0143400 Rorug03G0143500.1 Rorug03G0143600
rosa_samantha	Rh3AG193500 Rh3BG223300 Rh3CG218100
rosa_wichuraiana	Rw3G017630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	985
AccB7I	CCANNNNNTGG	1 cut(s)	786
AciI	CCGC	1 cut(s)	193
AclWI	GGATC	3 cut(s)	301, 759, 772
AcoI	YGGCCR	2 cut(s)	53, 417
AcsI	RAATTY	1 cut(s)	362
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	6 cut(s)	72, 247, 642, 786, 799, 800
AgsI	TTSAA	8 cut(s)	125, 160, 258, 532, 834, 872, 985, 1003
AjiI	CACGTC	2 cut(s)	279, 423
AjnI	CCWGG	3 cut(s)	785, 793, 862
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AloI	GAACNNNNNNTCC	2 cut(s)	767, 799
AluBI	AGCT	8 cut(s)	71, 117, 148, 328, 470, 548, 737, 751
AluI	AGCT	8 cut(s)	71, 117, 148, 328, 470, 548, 737, 751
Alw21I	GWGCWC	1 cut(s)	330
AlwI	GGATC	3 cut(s)	301, 759, 772
AlwNI	CAGNNNCTG	1 cut(s)	551
AoxI	GGCC	3 cut(s)	53, 417, 802
ApeKI	GCWGC	1 cut(s)	114
ApoI	RAATTY	1 cut(s)	362
AspS9I	GGNCC	4 cut(s)	250, 633, 789, 802
AsuC2I	CCSGG	1 cut(s)	164
AvaII	GGWCC	3 cut(s)	250, 633, 789
BalI	TGGCCA	2 cut(s)	55, 419
BamHI	GGATCC	1 cut(s)	764
BanII	GRGCYC	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	330
BbvCI	CCTCAGC	2 cut(s)	544, 641
BbvI	GCAGC	1 cut(s)	126
BccI	CCATC	3 cut(s)	551, 623, 628
BceAI	ACGGC	1 cut(s)	936
BcgI	CGANNNNNNTGC	2 cut(s)	688, 722
BciT130I	CCWGG	3 cut(s)	787, 795, 864
BcnI	CCSGG	1 cut(s)	164
BfaI	CTAG	2 cut(s)	149, 426
BfmI	CTRYAG	2 cut(s)	130, 732
BfuAI	ACCTGC	1 cut(s)	985
BisI	GCNGC	1 cut(s)	115
BlsI	GCNGC	1 cut(s)	116
Bme1390I	CCNGG	4 cut(s)	164, 787, 795, 864
Bme18I	GGWCC	3 cut(s)	250, 633, 789
BmgBI	CACGTC	2 cut(s)	279, 423
BmgT120I	GGNCC	4 cut(s)	250, 633, 789, 802
BmiI	GGNNCC	5 cut(s)	252, 634, 766, 791, 897
BmrFI	CCNGG	4 cut(s)	164, 787, 795, 864
BpiI	GAAGAC	1 cut(s)	132
Bpu10I	CCTNAGC	3 cut(s)	67, 544, 641
BpuEI	CTTGAG	3 cut(s)	313, 314, 609
BpuMI	CCSGG	1 cut(s)	164
BsaJI	CCNNGG	3 cut(s)	246, 793, 863
Bsc4I	CCNNNNNNNGG	6 cut(s)	72, 247, 642, 786, 799, 800
Bse1I	ACTGG	2 cut(s)	49, 768
Bse3DI	GCAATG	1 cut(s)	675
BseBI	CCWGG	3 cut(s)	787, 795, 864
BseDI	CCNNGG	3 cut(s)	246, 793, 863
BseGI	GGATG	1 cut(s)	562
BseLI	CCNNNNNNNGG	6 cut(s)	72, 247, 642, 786, 799, 800
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	5 cut(s)	387, 494, 558, 632, 938
BseNI	ACTGG	2 cut(s)	49, 768
BseRI	GAGGAG	1 cut(s)	729
BseXI	GCAGC	1 cut(s)	126
BseYI	CCCAGC	1 cut(s)	10
BshFI	GGCC	3 cut(s)	55, 419, 804
BsiHKAI	GWGCWC	1 cut(s)	330
BsiSI	CCGG	2 cut(s)	163, 282
BslFI	GGGAC	5 cut(s)	179, 319, 467, 599, 775
BslI	CCNNNNNNNGG	6 cut(s)	72, 247, 642, 786, 799, 800
BsmFI	GGGAC	5 cut(s)	179, 319, 467, 599, 775
BsnI	GGCC	3 cut(s)	55, 419, 804
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp1407I	TGTACA	1 cut(s)	33
Bsp143I	GATC	4 cut(s)	270, 306, 596, 764
BspACI	CCGC	1 cut(s)	193
BspANI	GGCC	3 cut(s)	55, 419, 804
BspCNI	CTCAG	5 cut(s)	388, 493, 557, 633, 937
BspHI	TCATGA	2 cut(s)	85, 493
BspLI	GGNNCC	5 cut(s)	252, 634, 766, 791, 897
BspMI	ACCTGC	1 cut(s)	985
BspPI	GGATC	3 cut(s)	301, 759, 772
BsrDI	GCAATG	1 cut(s)	675
BsrGI	TGTACA	1 cut(s)	33
BsrI	ACTGG	2 cut(s)	49, 768
BssECI	CCNNGG	3 cut(s)	246, 793, 863
BssMI	GATC	4 cut(s)	270, 306, 596, 764
BssT1I	CCWWGG	1 cut(s)	246
Bst2UI	CCWGG	3 cut(s)	787, 795, 864
Bst4CI	ACNGT	4 cut(s)	353, 565, 685, 881
BstAUI	TGTACA	1 cut(s)	33
BstDEI	CTNAG	7 cut(s)	67, 396, 408, 480, 544, 641, 924
BstENI	CCTNNNNNAGG	1 cut(s)	640
BstF5I	GGATG	1 cut(s)	562
BstKTI	GATC	4 cut(s)	273, 309, 599, 767
BstMBI	GATC	4 cut(s)	270, 306, 596, 764
BstMWI	GCNNNNNNNGC	2 cut(s)	696, 757
BstNI	CCWGG	3 cut(s)	787, 795, 864
BstNSI	RCATGY	1 cut(s)	444
BstSCI	CCNGG	4 cut(s)	162, 785, 793, 862
BstSFI	CTRYAG	2 cut(s)	130, 732
BstV1I	GCAGC	1 cut(s)	126
BstV2I	GAAGAC	1 cut(s)	132
BstX2I	RGATCY	2 cut(s)	306, 764
BstXI	CCANNNNNNTGG	1 cut(s)	906
BstYI	RGATCY	2 cut(s)	306, 764
BsuRI	GGCC	3 cut(s)	55, 419, 804
BtrI	CACGTC	2 cut(s)	279, 423
BtsCI	GGATG	1 cut(s)	562
BtsI	GCAGTG	1 cut(s)	364
BtsIMutI	CAGTG	5 cut(s)	56, 364, 561, 690, 775
BveI	ACCTGC	1 cut(s)	985
CaiI	CAGNNNCTG	1 cut(s)	551
CciI	TCATGA	2 cut(s)	85, 493
Cfr13I	GGNCC	4 cut(s)	250, 633, 789, 802
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	7 cut(s)	86, 232, 311, 441, 494, 691, 745
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	7 cut(s)	67, 396, 408, 480, 544, 641, 924
DpnI	GATC	4 cut(s)	272, 308, 598, 766
DpnII	GATC	4 cut(s)	270, 306, 596, 764
EaeI	YGGCCR	2 cut(s)	53, 417
Ecl136II	GAGCTC	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	330
Eco47I	GGWCC	3 cut(s)	250, 633, 789
Eco53kI	GAGCTC	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	328
EcoNI	CCTNNNNNAGG	1 cut(s)	640
EcoO109I	RGGNCCY	2 cut(s)	250, 633
EcoRII	CCWGG	3 cut(s)	785, 793, 862
EcoT14I	CCWWGG	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	7 cut(s)	89, 235, 314, 444, 497, 694, 748
FaqI	GGGAC	5 cut(s)	179, 319, 467, 599, 775
FatI	CATG	7 cut(s)	85, 231, 310, 440, 493, 690, 744
Fnu4HI	GCNGC	1 cut(s)	115
FokI	GGATG	1 cut(s)	569
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	1 cut(s)	115
FspBI	CTAG	2 cut(s)	149, 426
GluI	GCNGC	1 cut(s)	115
GsaI	CCCAGC	1 cut(s)	14
HaeIII	GGCC	3 cut(s)	55, 419, 804
HapII	CCGG	2 cut(s)	163, 282
Hin1II	CATG	7 cut(s)	89, 235, 314, 444, 497, 694, 748
HinfI	GANTC	2 cut(s)	672, 830
HpaII	CCGG	2 cut(s)	163, 282
Hpy166II	GTNNAC	5 cut(s)	34, 36, 433, 475, 775
Hpy188I	TCNGA	4 cut(s)	175, 725, 877, 927
Hpy188III	TCNNGA	6 cut(s)	86, 494, 626, 709, 982, 1000
Hpy8I	GTNNAC	5 cut(s)	34, 36, 433, 475, 775
Hpy99I	CGWCG	1 cut(s)	922
HpyAV	CCTTC	3 cut(s)	264, 988, 997
HpyCH4III	ACNGT	4 cut(s)	353, 565, 685, 881
HpyCH4IV	ACGT	2 cut(s)	278, 422
HpyCH4V	TGCA	3 cut(s)	4, 444, 994
HpyF10VI	GCNNNNNNNGC	2 cut(s)	696, 757
HpyF3I	CTNAG	7 cut(s)	67, 396, 408, 480, 544, 641, 924
HpySE526I	ACGT	2 cut(s)	278, 422
Hsp92II	CATG	7 cut(s)	89, 235, 314, 444, 497, 694, 748
Kzo9I	GATC	4 cut(s)	270, 306, 596, 764
LmnI	GCTCC	4 cut(s)	742, 748, 895, 914
Lsp1109I	GCAGC	1 cut(s)	126
MaeI	CTAG	2 cut(s)	149, 426
MaeII	ACGT	2 cut(s)	278, 422
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	4 cut(s)	272, 308, 598, 766
MboI	GATC	4 cut(s)	270, 306, 596, 764
MboII	GAAGA	2 cut(s)	137, 229
MflI	RGATCY	2 cut(s)	306, 764
MhlI	GDGCHC	1 cut(s)	330
MlsI	TGGCCA	2 cut(s)	55, 419
MluCI	AATT	6 cut(s)	155, 198, 321, 362, 367, 447
MluNI	TGGCCA	2 cut(s)	55, 419
Mox20I	TGGCCA	2 cut(s)	55, 419
MscI	TGGCCA	2 cut(s)	55, 419
MseI	TTAA	3 cut(s)	366, 753, 930
Msp20I	TGGCCA	2 cut(s)	55, 419
MspI	CCGG	2 cut(s)	163, 282
MspR9I	CCNGG	4 cut(s)	164, 787, 795, 864
MvaI	CCWGG	3 cut(s)	787, 795, 864
MwoI	GCNNNNNNNGC	2 cut(s)	696, 757
NciI	CCSGG	1 cut(s)	164
NdeII	GATC	4 cut(s)	270, 306, 596, 764
NlaIII	CATG	7 cut(s)	89, 235, 314, 444, 497, 694, 748
NlaIV	GGNNCC	5 cut(s)	252, 634, 766, 791, 897
NmuCI	GTSAC	1 cut(s)	401
NspI	RCATGY	1 cut(s)	444
PagI	TCATGA	2 cut(s)	85, 493
PfeI	GAWTC	2 cut(s)	672, 830
PflMI	CCANNNNNTGG	1 cut(s)	786
PkrI	GCNGC	1 cut(s)	116
PpuMI	RGGWCCY	2 cut(s)	250, 633
Psp124BI	GAGCTC	1 cut(s)	330
Psp5II	RGGWCCY	2 cut(s)	250, 633
Psp6I	CCWGG	3 cut(s)	785, 793, 862
PspFI	CCCAGC	1 cut(s)	10
PspGI	CCWGG	3 cut(s)	785, 793, 862
PspN4I	GGNNCC	5 cut(s)	252, 634, 766, 791, 897
PspPI	GGNCC	4 cut(s)	250, 633, 789, 802
PspPPI	RGGWCCY	2 cut(s)	250, 633
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	2 cut(s)	306, 764
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SacI	GAGCTC	1 cut(s)	330
SaqAI	TTAA	3 cut(s)	366, 753, 930
SatI	GCNGC	1 cut(s)	115
Sau3AI	GATC	4 cut(s)	270, 306, 596, 764
Sau96I	GGNCC	4 cut(s)	250, 633, 789, 802
ScrFI	CCNGG	4 cut(s)	164, 787, 795, 864
SduI	GDGCHC	1 cut(s)	330
SfcI	CTRYAG	2 cut(s)	130, 732
SinI	GGWCC	3 cut(s)	250, 633, 789
SmlI	CTYRAG	3 cut(s)	292, 329, 624
SmoI	CTYRAG	3 cut(s)	292, 329, 624
Sse9I	AATT	6 cut(s)	155, 198, 321, 362, 367, 447
SsiI	CCGC	1 cut(s)	193
SspMI	CTAG	2 cut(s)	149, 426
SstI	GAGCTC	1 cut(s)	330
StyD4I	CCNGG	4 cut(s)	162, 785, 793, 862
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	4 cut(s)	353, 565, 685, 881
TaiI	ACGT	2 cut(s)	281, 425
TaqI	TCGA	1 cut(s)	204
TasI	AATT	6 cut(s)	155, 198, 321, 362, 367, 447
TatI	WGTACW	1 cut(s)	33
TfiI	GAWTC	2 cut(s)	672, 830
Tru1I	TTAA	3 cut(s)	366, 753, 930
Tru9I	TTAA	3 cut(s)	366, 753, 930
TscAI	CASTG	5 cut(s)	56, 364, 568, 690, 775
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	1 cut(s)	114
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	3 cut(s)	109, 627, 664
TspGWI	ACGGA	2 cut(s)	71, 777
TspRI	CASTG	5 cut(s)	56, 364, 568, 690, 775
Van91I	CCANNNNNTGG	1 cut(s)	786
VpaK11BI	GGWCC	3 cut(s)	250, 633, 789
XagI	CCTNNNNNAGG	1 cut(s)	640
XapI	RAATTY	1 cut(s)	362
XceI	RCATGY	1 cut(s)	444
XcmI	CCANNNNNNNNNTGG	2 cut(s)	427, 688
XspI	CTAG	2 cut(s)	149, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.