Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8493269.1

Orthogroup ID

OG0012638

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2331

Gene Structure 2331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8493269.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1055 bp

aaaggtcgtcacaattttccaactgcttattagtgaactccaccatcatgcaaagtccagcagagaaaaaaccaggcgtctacacctacgtgagtcaatggccaatctactccttggcttggtcagttcgccaagacaagccttcacgcctcgccataggaagcttcatcgaagagtacagcaacaaggtcgaactcgtccaattcaacccgtccacctccgacttcaccactgataatcgcctcattttcgaccacccttatgcccccacaaacgtcatgttcttcccttcaggggcggccaccaatcccgacctcatagccacctccggtgactacttacgcatttgggagatccatgacgaccgaattgagctcaggtccctgctcaatgggaacatgagcagcgagttcaactcggccataacgtcatttgattgggccgagtttgacactcgacgtgtggcaacatcaagtgtcgacacaacctgtacgatttgggacattgaaacggaggccgtggacacccaactggtagctcatgacaaagaagtgtatgacatttcttggggtggattcaatgtatttgcttctgcttctggggatggcactgttcgggtatttgacctaagagacaaagagaggtcgaccatagtatacgagaaccctgctcaagatgggtcattgttgaggctagaatggaacaaacaagacccaaggttcatagccacggttggaatggacagcaacagggtggtgatattggacattaggtttcccacagcaccattgatggagctcaaaaagcatggagctagtgtgaatgccatttcttggtcaccacgcacggggcaccagctatgttctgtgagtgatgattcaagggctatgatatgggaggtggtgagatccggatttggatccgatggggcggacatggagccggagatgtggtatggagtgacagctcagattaatcaagtgcggtggtcacctgtggagttggattgggttgccattgctttcttgaacaagttgcagctattgaaggtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

350

Amino Acids

39.5

Weight (kDa)

4.78

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19450
malus_domestica	MD12G1030700.v1.1 MD14G1031200.v1.1
prunus_persica	Prupe.7G101800_v2.0.a1
pyrus_communis	pycom12g02860 pycom14g02810
rosa_chinensis	RchiOBHm_Chr3g0474771
rosa_multiflora	Rmu_co8493269.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406870
rosa_rugosa	Rorug03G0143300 Rorug03G0143300 Rorug03G0143300 Rorug03G0143400 Rorug03G0143500.1 Rorug03G0143600
rosa_samantha	Rh3AG193500 Rh3BG223300 Rh3CG218100
rosa_wichuraiana	Rw3G017630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	851
AccB7I	CCANNNNNTGG	1 cut(s)	833
AccI	GTMKAC	4 cut(s)	80, 479, 646, 656
AccIII	TCCGGA	1 cut(s)	910
AciI	CCGC	3 cut(s)	298, 931, 984
AclWI	GGATC	4 cut(s)	348, 902, 914, 927
AcoI	YGGCCR	3 cut(s)	100, 299, 419
AcuI	CTGAAG	1 cut(s)	275
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	2 cut(s)	178, 492
AfiI	CCNNNNNNNGG	4 cut(s)	119, 294, 833, 847
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	7 cut(s)	207, 414, 508, 579, 881, 1029, 1047
AjiI	CACGTC	1 cut(s)	460
AjnI	CCWGG	1 cut(s)	72
AleI	CACNNNNGTG	1 cut(s)	88
AluBI	AGCT	8 cut(s)	164, 375, 538, 798, 814, 858, 967, 1041
AluI	AGCT	8 cut(s)	164, 375, 538, 798, 814, 858, 967, 1041
Alw21I	GWGCWC	2 cut(s)	377, 800
Alw26I	GTCTC	1 cut(s)	626
AlwI	GGATC	4 cut(s)	348, 902, 914, 927
Aor13HI	TCCGGA	1 cut(s)	910
AoxI	GGCC	5 cut(s)	100, 299, 419, 440, 515
ApeKI	GCWGC	2 cut(s)	404, 1038
AseI	ATTAAT	1 cut(s)	974
AspS9I	GGNCC	2 cut(s)	380, 440
AsuHPI	GGTGA	6 cut(s)	219, 343, 768, 830, 915, 983
AvaII	GGWCC	1 cut(s)	380
BaeGI	GKGCMC	1 cut(s)	854
BalI	TGGCCA	1 cut(s)	102
BamHI	GGATCC	1 cut(s)	919
BanI	GGYRCC	1 cut(s)	851
BanII	GRGCYC	2 cut(s)	377, 800
Bbv12I	GWGCWC	2 cut(s)	377, 800
BbvI	GCAGC	2 cut(s)	416, 1050
BccI	CCATC	5 cut(s)	52, 598, 670, 786, 919
BceAI	ACGGC	1 cut(s)	502
BcgI	CGANNNNNNTGC	4 cut(s)	171, 205, 649, 683
BciT130I	CCWGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	626
BfaI	CTAG	2 cut(s)	694, 815
BisI	GCNGC	3 cut(s)	299, 405, 1039
BlsI	GCNGC	3 cut(s)	300, 406, 1040
Bme1390I	CCNGG	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	380
BmgBI	CACGTC	1 cut(s)	460
BmgT120I	GGNCC	2 cut(s)	380, 440
BmiI	GGNNCC	4 cut(s)	382, 853, 921, 941
BmrFI	CCNGG	1 cut(s)	74
BplI	GAGNNNNNCTC	2 cut(s)	400, 432
Bpu10I	CCTNAGC	1 cut(s)	376
BpuEI	CTTGAG	1 cut(s)	656
BsaAI	YACGTR	1 cut(s)	90
BsaBI	GATNNNNATC	1 cut(s)	918
BsaHI	GRCGYC	1 cut(s)	77
BsaJI	CCNNGG	4 cut(s)	113, 518, 715, 728
BsaWI	WCCGGW	2 cut(s)	328, 910
BsaXI	ACNNNNNCTCC	4 cut(s)	803, 833, 937, 967
Bsc4I	CCNNNNNNNGG	4 cut(s)	119, 294, 833, 847
Bse1I	ACTGG	1 cut(s)	536
Bse3DI	GCAATG	1 cut(s)	1016
Bse8I	GATNNNNATC	1 cut(s)	918
BseAI	TCCGGA	1 cut(s)	910
BseBI	CCWGG	1 cut(s)	74
BseDI	CCNNGG	4 cut(s)	113, 518, 715, 728
BseGI	GGATG	1 cut(s)	609
BseJI	GATNNNNATC	1 cut(s)	918
BseLI	CCNNNNNNNGG	4 cut(s)	119, 294, 833, 847
BseMI	GCAATG	1 cut(s)	1016
BseMII	CTCAG	2 cut(s)	390, 982
BseNI	ACTGG	1 cut(s)	536
BseSI	GKGCMC	1 cut(s)	854
BseXI	GCAGC	2 cut(s)	416, 1050
Bsh1285I	CGRYCG	1 cut(s)	366
BshFI	GGCC	5 cut(s)	102, 301, 421, 442, 517
BshNI	GGYRCC	1 cut(s)	851
BsiEI	CGRYCG	1 cut(s)	366
BsiHKAI	GWGCWC	2 cut(s)	377, 800
BsiSI	CCGG	3 cut(s)	329, 911, 943
BslFI	GGGAC	2 cut(s)	366, 514
BslI	CCNNNNNNNGG	4 cut(s)	119, 294, 833, 847
BsmAI	GTCTC	1 cut(s)	626
BsmFI	GGGAC	2 cut(s)	366, 514
BsmI	GAATGC	1 cut(s)	828
BsnI	GGCC	5 cut(s)	102, 301, 421, 442, 517
Bsp1286I	GDGCHC	3 cut(s)	377, 800, 854
Bsp13I	TCCGGA	1 cut(s)	910
Bsp143I	GATC	3 cut(s)	353, 907, 919
BspACI	CCGC	3 cut(s)	298, 931, 984
BspANI	GGCC	5 cut(s)	102, 301, 421, 442, 517
BspCNI	CTCAG	2 cut(s)	389, 981
BspEI	TCCGGA	1 cut(s)	910
BspHI	TCATGA	1 cut(s)	540
BspLI	GGNNCC	4 cut(s)	382, 853, 921, 941
BspPI	GGATC	4 cut(s)	348, 902, 914, 927
BspT107I	GGYRCC	1 cut(s)	851
BsrDI	GCAATG	1 cut(s)	1016
BsrI	ACTGG	1 cut(s)	536
BssECI	CCNNGG	4 cut(s)	113, 518, 715, 728
BssMI	GATC	3 cut(s)	353, 907, 919
BssNAI	GTATAC	1 cut(s)	657
BssNI	GRCGYC	1 cut(s)	77
BssT1I	CCWWGG	2 cut(s)	113, 715
Bst1107I	GTATAC	1 cut(s)	657
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	2 cut(s)	612, 732
Bst6I	CTCTTC	1 cut(s)	167
BstACI	GRCGYC	1 cut(s)	77
BstBAI	YACGTR	1 cut(s)	90
BstDEI	CTNAG	3 cut(s)	376, 628, 968
BstDSI	CCRYGG	2 cut(s)	518, 728
BstEII	GGTNACC	2 cut(s)	836, 989
BstF5I	GGATG	1 cut(s)	609
BstKTI	GATC	3 cut(s)	356, 910, 922
BstMAI	GTCTC	1 cut(s)	626
BstMBI	GATC	3 cut(s)	353, 907, 919
BstMCI	CGRYCG	1 cut(s)	366
BstMWI	GCNNNNNNNGC	1 cut(s)	804
BstNI	CCWGG	1 cut(s)	74
BstPI	GGTNACC	2 cut(s)	836, 989
BstSCI	CCNGG	1 cut(s)	72
BstSLI	GKGCMC	1 cut(s)	854
BstV1I	GCAGC	2 cut(s)	416, 1050
BstX2I	RGATCY	3 cut(s)	353, 907, 919
BstYI	RGATCY	3 cut(s)	353, 907, 919
BstZ17I	GTATAC	1 cut(s)	657
BsuRI	GGCC	5 cut(s)	102, 301, 421, 442, 517
BtgI	CCRYGG	2 cut(s)	518, 728
BtrI	CACGTC	1 cut(s)	460
BtsCI	GGATG	1 cut(s)	609
BtsIMutI	CAGTG	2 cut(s)	230, 608
CciI	TCATGA	1 cut(s)	540
Cfr13I	GGNCC	2 cut(s)	380, 440
CseI	GACGC	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	177, 491
CspCI	CAANNNNNGTGG	2 cut(s)	967, 1002
CviAII	CATG	7 cut(s)	48, 279, 358, 399, 541, 808, 936
CviQI	GTAC	2 cut(s)	177, 491
DdeI	CTNAG	3 cut(s)	376, 628, 968
DpnI	GATC	3 cut(s)	355, 909, 921
DpnII	GATC	3 cut(s)	353, 907, 919
EaeI	YGGCCR	3 cut(s)	100, 299, 419
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
EciI	GGCGGA	1 cut(s)	946
Ecl136II	GAGCTC	2 cut(s)	375, 798
Eco130I	CCWWGG	2 cut(s)	113, 715
Eco24I	GRGCYC	2 cut(s)	377, 800
Eco47I	GGWCC	1 cut(s)	380
Eco53kI	GAGCTC	2 cut(s)	375, 798
Eco57I	CTGAAG	1 cut(s)	275
Eco91I	GGTNACC	2 cut(s)	836, 989
EcoICRI	GAGCTC	2 cut(s)	375, 798
EcoO109I	RGGNCCY	1 cut(s)	380
EcoO65I	GGTNACC	2 cut(s)	836, 989
EcoRII	CCWGG	1 cut(s)	72
EcoT14I	CCWWGG	2 cut(s)	113, 715
EcoT38I	GRGCYC	2 cut(s)	377, 800
ErhI	CCWWGG	2 cut(s)	113, 715
FaeI	CATG	7 cut(s)	51, 282, 361, 402, 544, 811, 939
FaqI	GGGAC	2 cut(s)	366, 514
FatI	CATG	7 cut(s)	47, 278, 357, 398, 540, 807, 935
FblI	GTMKAC	4 cut(s)	80, 479, 646, 656
Fnu4HI	GCNGC	3 cut(s)	299, 405, 1039
FokI	GGATG	1 cut(s)	616
FriOI	GRGCYC	2 cut(s)	377, 800
Fsp4HI	GCNGC	3 cut(s)	299, 405, 1039
FspBI	CTAG	2 cut(s)	694, 815
GluI	GCNGC	3 cut(s)	299, 405, 1039
HaeIII	GGCC	5 cut(s)	102, 301, 421, 442, 517
HapII	CCGG	3 cut(s)	329, 911, 943
HgaI	GACGC	1 cut(s)	66
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	7 cut(s)	51, 282, 361, 402, 544, 811, 939
HincII	GTYRAC	2 cut(s)	480, 647
HindII	GTYRAC	2 cut(s)	480, 647
HindIII	AAGCTT	1 cut(s)	162
HinfI	GANTC	3 cut(s)	93, 575, 877
HpaII	CCGG	3 cut(s)	329, 911, 943
HphI	GGTGA	6 cut(s)	219, 343, 768, 830, 915, 983
Hpy166II	GTNNAC	7 cut(s)	36, 81, 215, 480, 522, 647, 657
Hpy188I	TCNGA	3 cut(s)	222, 924, 971
Hpy188III	TCNNGA	5 cut(s)	310, 541, 673, 911, 1026
Hpy8I	GTNNAC	7 cut(s)	36, 81, 215, 480, 522, 647, 657
Hpy99I	CGWCG	1 cut(s)	461
HpyAV	CCTTC	3 cut(s)	152, 299, 1041
HpyCH4III	ACNGT	2 cut(s)	612, 732
HpyCH4IV	ACGT	4 cut(s)	89, 275, 427, 459
HpyCH4V	TGCA	2 cut(s)	51, 1038
HpyF10VI	GCNNNNNNNGC	1 cut(s)	804
HpyF3I	CTNAG	3 cut(s)	376, 628, 968
HpySE526I	ACGT	4 cut(s)	89, 275, 427, 459
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	7 cut(s)	51, 282, 361, 402, 544, 811, 939
Kpn2I	TCCGGA	1 cut(s)	910
Kzo9I	GATC	3 cut(s)	353, 907, 919
LmnI	GCTCC	3 cut(s)	795, 811, 939
Lsp1109I	GCAGC	2 cut(s)	416, 1050
MaeI	CTAG	2 cut(s)	694, 815
MaeII	ACGT	4 cut(s)	89, 275, 427, 459
MaeIII	GTNAC	5 cut(s)	8, 331, 836, 960, 989
MalI	GATC	3 cut(s)	355, 909, 921
MboI	GATC	3 cut(s)	353, 907, 919
MboII	GAAGA	2 cut(s)	184, 276
MflI	RGATCY	3 cut(s)	353, 907, 919
MhlI	GDGCHC	3 cut(s)	377, 800, 854
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	3 cut(s)	13, 202, 368
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	102
MmeI	TCCRAC	4 cut(s)	44, 245, 714, 983
MnlI	CCTC	9 cut(s)	160, 228, 253, 325, 336, 507, 635, 683, 891
Mox20I	TGGCCA	1 cut(s)	102
MroI	TCCGGA	1 cut(s)	910
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	1 cut(s)	974
MslI	CAYNNNNRTG	3 cut(s)	46, 88, 260
Msp20I	TGGCCA	1 cut(s)	102
MspI	CCGG	3 cut(s)	329, 911, 943
MspR9I	CCNGG	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	828
MvaI	CCWGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	804
NdeII	GATC	3 cut(s)	353, 907, 919
NlaIII	CATG	7 cut(s)	51, 282, 361, 402, 544, 811, 939
NlaIV	GGNNCC	4 cut(s)	382, 853, 921, 941
NmeAIII	GCCGAG	2 cut(s)	397, 468
NmuCI	GTSAC	5 cut(s)	8, 331, 836, 960, 989
OliI	CACNNNNGTG	1 cut(s)	88
PagI	TCATGA	1 cut(s)	540
PcsI	WCGNNNNNNNCGW	1 cut(s)	424
PctI	GAATGC	1 cut(s)	828
PfeI	GAWTC	2 cut(s)	575, 877
PflMI	CCANNNNNTGG	1 cut(s)	833
PkrI	GCNGC	3 cut(s)	300, 406, 1040
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Ppu21I	YACGTR	1 cut(s)	90
PpuMI	RGGWCCY	1 cut(s)	380
PshBI	ATTAAT	1 cut(s)	974
Psp124BI	GAGCTC	2 cut(s)	377, 800
Psp5II	RGGWCCY	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	72
PspEI	GGTNACC	2 cut(s)	836, 989
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	4 cut(s)	382, 853, 921, 941
PspPI	GGNCC	2 cut(s)	380, 440
PspPPI	RGGWCCY	1 cut(s)	380
PsuI	RGATCY	3 cut(s)	353, 907, 919
RsaI	GTAC	2 cut(s)	178, 492
RsaNI	GTAC	2 cut(s)	177, 491
RseI	CAYNNNNRTG	3 cut(s)	46, 88, 260
SacI	GAGCTC	2 cut(s)	377, 800
SalI	GTCGAC	2 cut(s)	478, 645
SaqAI	TTAA	1 cut(s)	974
SatI	GCNGC	3 cut(s)	299, 405, 1039
Sau3AI	GATC	3 cut(s)	353, 907, 919
Sau96I	GGNCC	2 cut(s)	380, 440
SchI	GAGTC	1 cut(s)	102
ScrFI	CCNGG	1 cut(s)	74
SduI	GDGCHC	3 cut(s)	377, 800, 854
SinI	GGWCC	1 cut(s)	380
SmiMI	CAYNNNNRTG	3 cut(s)	46, 88, 260
SmlI	CTYRAG	1 cut(s)	671
SmoI	CTYRAG	1 cut(s)	671
Sse9I	AATT	3 cut(s)	13, 202, 368
SsiI	CCGC	3 cut(s)	298, 931, 984
SspMI	CTAG	2 cut(s)	694, 815
SstI	GAGCTC	2 cut(s)	377, 800
StyD4I	CCNGG	1 cut(s)	72
StyI	CCWWGG	2 cut(s)	113, 715
TaaI	ACNGT	2 cut(s)	612, 732
TaiI	ACGT	4 cut(s)	92, 278, 430, 462
TaqI	TCGA	6 cut(s)	170, 191, 251, 456, 479, 646
TaqII	GACCGA	1 cut(s)	380
TasI	AATT	3 cut(s)	13, 202, 368
TatI	WGTACW	1 cut(s)	176
TauI	GCSGC	1 cut(s)	301
TfiI	GAWTC	2 cut(s)	575, 877
Tru1I	TTAA	1 cut(s)	974
Tru9I	TTAA	1 cut(s)	974
TscAI	CASTG	2 cut(s)	237, 615
TseFI	GTSAC	5 cut(s)	8, 331, 836, 960, 989
TseI	GCWGC	2 cut(s)	404, 1038
Tsp45I	GTSAC	5 cut(s)	8, 331, 836, 960, 989
TspDTI	ATGAA	2 cut(s)	156, 711
TspGWI	ACGGA	1 cut(s)	526
TspRI	CASTG	2 cut(s)	237, 615
Van91I	CCANNNNNTGG	1 cut(s)	833
VpaK11BI	GGWCC	1 cut(s)	380
VspI	ATTAAT	1 cut(s)	974
XcmI	CCANNNNNNNNNTGG	1 cut(s)	735
XmiI	GTMKAC	4 cut(s)	80, 479, 646, 656
XspI	CTAG	2 cut(s)	694, 815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.