Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0012638

Physical Location & Seq

Genomic Coordinates Reverse (-)

2589989 .. 2591263

Gene Structure 1275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g02860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGCAAAGACCAGCAGAGAAAAAAGCAGGTGTCCACACCTACATAAGCCAATGGCCAATCTACTCCTTAGCATGGTCAGTCCGCCATGACAAGCCTTCACGACTAGCCATAGGTAGCTTCATTGAGGACTACAGCAACAAGGTTGAATTAGTCCAGTTCAACCAAGACACATCCGATTTCACCACCGATAACCGCCTCATGTTCGACCACCCTTACGCACCAACCAACCTCATGTTCTTCCCCTCTGAGGACACCACGAATCCTGACCTAATTGCCACGTCCGGCGACTACTTAAGGTTGTGGGAGATCCATGATGATAGGATTGAGCTCAAGTCTTTGCTGAATAGCAACATGAGTAGTGAGTTTAATTCGGCTATAACGTCTTTTGATTGGGCAGAGTGTGACACTAGGCGTGTGGCTATGTCTAGTGTGGACACTACCTGCACAATTTGGGACATTGAGAGGGAAGTTGTGGATACTCAACTGGTGGCTCATGATAAAGAAGTGTATGACATTTCTTGGGGAGGCTTCAATGTGTTTGCTTCAGCTTCTGGTGATGGCACTGTCAGGGTGTTTGATTTGAGAAACAAAGAGAGGTCTACCATAGTTTATGAAAACCCTACTCAAGACAGATCTTTGTTGAGGGTAGAATGGAACAAGCATGACCAAAGATTCATTGCCACAGTTGGAATGGACAGCAACAAAGTGGTAATATTGGACATCAGATTTCCCACTTCACCTCTAATGGAGCTCAAAAAACATGATGCCAGTGTGAATGCAATTTCATGGTCTCAAGGTAAGGGACACCAGATTTGTTCAGTGAGTGATGATTCAAGGGCTATGATTTGGGATGTGGGGAGGCCTGGATTTCAGTCGGAGAGTGGCGGCGATATGGAGCCGGAGATGTGGTATGGAACGACGGCTCAGATTAATCAAGTGCGTTGGTCTGCTGTGGAGTTGAATTGGATTGGTATTGGCTTTTTGAACAAGTTGCAGCTCTTGAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

337

Amino Acids

38.41

Weight (kDa)

4.96

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19450
malus_domestica	MD12G1030700.v1.1 MD14G1031200.v1.1
prunus_persica	Prupe.7G101800_v2.0.a1
pyrus_communis	pycom12g02860 pycom14g02810
rosa_chinensis	RchiOBHm_Chr3g0474771
rosa_multiflora	Rmu_co8493269.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406870
rosa_rugosa	Rorug03G0143300 Rorug03G0143300 Rorug03G0143300 Rorug03G0143400 Rorug03G0143500.1 Rorug03G0143600
rosa_samantha	Rh3AG193500 Rh3BG223300 Rh3CG218100
rosa_wichuraiana	Rw3G017630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	17
Acc36I	ACCTGC	2 cut(s)	17, 449
AccI	GTMKAC	1 cut(s)	599
AciI	CCGC	3 cut(s)	82, 193, 885
AclWI	GGATC	1 cut(s)	301
AcoI	YGGCCR	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	528
AfiI	CCNNNNNNNGG	2 cut(s)	72, 247
AflII	CTTAAG	1 cut(s)	292
AgsI	TTSAA	7 cut(s)	146, 160, 532, 834, 961, 985, 1003
AjiI	CACGTC	1 cut(s)	279
AjnI	CCWGG	1 cut(s)	862
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AluBI	AGCT	5 cut(s)	117, 328, 548, 751, 997
AluI	AGCT	5 cut(s)	117, 328, 548, 751, 997
Alw21I	GWGCWC	2 cut(s)	330, 753
Alw26I	GTCTC	1 cut(s)	795
AlwI	GGATC	1 cut(s)	301
AlwNI	CAGNNNCTG	1 cut(s)	551
AoxI	GGCC	2 cut(s)	53, 860
ApeKI	GCWGC	1 cut(s)	994
ArsI	GACNNNNNNTTYG	2 cut(s)	795, 827
AseI	ATTAAT	1 cut(s)	930
AsuHPI	GGTGA	3 cut(s)	172, 566, 729
BalI	TGGCCA	1 cut(s)	55
BanII	GRGCYC	2 cut(s)	330, 753
Bbv12I	GWGCWC	2 cut(s)	330, 753
BbvI	GCAGC	1 cut(s)	1006
BccI	CCATC	1 cut(s)	551
BceAI	ACGGC	1 cut(s)	936
BciT130I	CCWGG	1 cut(s)	864
BciVI	GTATCC	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	795
BfaI	CTAG	3 cut(s)	104, 408, 426
BfmI	CTRYAG	1 cut(s)	130
BfrI	CTTAAG	1 cut(s)	292
BfuAI	ACCTGC	2 cut(s)	17, 449
BfuI	GTATCC	1 cut(s)	469
BglII	AGATCT	1 cut(s)	632
BisI	GCNGC	2 cut(s)	886, 995
BlsI	GCNGC	2 cut(s)	887, 996
Bme1390I	CCNGG	1 cut(s)	864
BmgBI	CACGTC	1 cut(s)	279
BmiI	GGNNCC	1 cut(s)	897
BmrFI	CCNGG	1 cut(s)	864
BmsI	GCATC	1 cut(s)	754
Bpu10I	CCTNAGC	1 cut(s)	67
BpuEI	CTTGAG	3 cut(s)	314, 609, 777
BsaI	GGTCTC	1 cut(s)	795
BsaXI	ACNNNNNCTCC	2 cut(s)	893, 923
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 247
Bse1I	ACTGG	3 cut(s)	154, 489, 768
Bse3DI	GCAATG	1 cut(s)	675
BseBI	CCWGG	1 cut(s)	864
BseGI	GGATG	2 cut(s)	170, 856
BseLI	CCNNNNNNNGG	2 cut(s)	72, 247
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	2 cut(s)	237, 938
BseNI	ACTGG	3 cut(s)	154, 489, 768
BseXI	GCAGC	1 cut(s)	1006
BsgI	GTGCAG	1 cut(s)	427
BshFI	GGCC	2 cut(s)	55, 862
BsiHKAI	GWGCWC	2 cut(s)	330, 753
BsiSI	CCGG	2 cut(s)	282, 899
BslFI	GGGAC	2 cut(s)	467, 816
BslI	CCNNNNNNNGG	2 cut(s)	72, 247
BsmAI	GTCTC	1 cut(s)	795
BsmFI	GGGAC	2 cut(s)	467, 816
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	2 cut(s)	55, 862
Bso31I	GGTCTC	1 cut(s)	795
Bsp1286I	GDGCHC	2 cut(s)	330, 753
Bsp143I	GATC	2 cut(s)	306, 632
BspACI	CCGC	3 cut(s)	82, 193, 885
BspANI	GGCC	2 cut(s)	55, 862
BspCNI	CTCAG	2 cut(s)	238, 937
BspHI	TCATGA	1 cut(s)	493
BspLI	GGNNCC	1 cut(s)	897
BspMI	ACCTGC	2 cut(s)	17, 449
BspPI	GGATC	1 cut(s)	301
BspTI	CTTAAG	1 cut(s)	292
BspTNI	GGTCTC	1 cut(s)	795
BsrDI	GCAATG	1 cut(s)	675
BsrI	ACTGG	3 cut(s)	154, 489, 768
BssMI	GATC	2 cut(s)	306, 632
Bst2UI	CCWGG	1 cut(s)	864
Bst4CI	ACNGT	2 cut(s)	565, 685
BstAFI	CTTAAG	1 cut(s)	292
BstDEI	CTNAG	3 cut(s)	67, 246, 924
BstF5I	GGATG	2 cut(s)	170, 856
BstKTI	GATC	2 cut(s)	309, 635
BstMAI	GTCTC	1 cut(s)	795
BstMBI	GATC	2 cut(s)	306, 632
BstNI	CCWGG	1 cut(s)	864
BstSCI	CCNGG	1 cut(s)	862
BstSFI	CTRYAG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	1006
BstX2I	RGATCY	2 cut(s)	306, 632
BstYI	RGATCY	2 cut(s)	306, 632
BsuI	GTATCC	1 cut(s)	469
BsuRI	GGCC	2 cut(s)	55, 862
BtrI	CACGTC	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	170, 856
BtsIMutI	CAGTG	3 cut(s)	561, 775, 825
BveI	ACCTGC	2 cut(s)	17, 449
CaiI	CAGNNNCTG	1 cut(s)	551
CciI	TCATGA	1 cut(s)	493
DdeI	CTNAG	3 cut(s)	67, 246, 924
DpnI	GATC	2 cut(s)	308, 634
DpnII	GATC	2 cut(s)	306, 632
EaeI	YGGCCR	1 cut(s)	53
EciI	GGCGGA	1 cut(s)	71
Ecl136II	GAGCTC	2 cut(s)	328, 751
Eco147I	AGGCCT	1 cut(s)	862
Eco24I	GRGCYC	2 cut(s)	330, 753
Eco31I	GGTCTC	1 cut(s)	795
Eco53kI	GAGCTC	2 cut(s)	328, 751
Eco57I	CTGAAG	1 cut(s)	528
EcoICRI	GAGCTC	2 cut(s)	328, 751
EcoRII	CCWGG	1 cut(s)	862
EcoT38I	GRGCYC	2 cut(s)	330, 753
FaqI	GGGAC	2 cut(s)	467, 816
FblI	GTMKAC	1 cut(s)	599
Fnu4HI	GCNGC	2 cut(s)	886, 995
FokI	GGATG	2 cut(s)	157, 863
FriOI	GRGCYC	2 cut(s)	330, 753
Fsp4HI	GCNGC	2 cut(s)	886, 995
FspBI	CTAG	3 cut(s)	104, 408, 426
GluI	GCNGC	2 cut(s)	886, 995
HaeIII	GGCC	2 cut(s)	55, 862
HapII	CCGG	2 cut(s)	282, 899
HinfI	GANTC	3 cut(s)	259, 672, 830
HpaII	CCGG	2 cut(s)	282, 899
HphI	GGTGA	3 cut(s)	172, 566, 729
Hpy166II	GTNNAC	3 cut(s)	34, 433, 600
Hpy188I	TCNGA	5 cut(s)	175, 247, 725, 877, 927
Hpy188III	TCNNGA	5 cut(s)	99, 263, 494, 626, 1000
Hpy8I	GTNNAC	3 cut(s)	34, 433, 600
Hpy99I	CGWCG	1 cut(s)	922
HpyAV	CCTTC	2 cut(s)	105, 997
HpyCH4III	ACNGT	2 cut(s)	565, 685
HpyCH4IV	ACGT	2 cut(s)	278, 380
HpyCH4V	TGCA	4 cut(s)	4, 444, 779, 994
HpyF3I	CTNAG	3 cut(s)	67, 246, 924
HpySE526I	ACGT	2 cut(s)	278, 380
Kzo9I	GATC	2 cut(s)	306, 632
LmnI	GCTCC	2 cut(s)	748, 895
Lsp1109I	GCAGC	1 cut(s)	1006
LweI	GCATC	1 cut(s)	754
MaeI	CTAG	3 cut(s)	104, 408, 426
MaeII	ACGT	2 cut(s)	278, 380
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	2 cut(s)	308, 634
MboI	GATC	2 cut(s)	306, 632
MboII	GAAGA	1 cut(s)	229
MflI	RGATCY	2 cut(s)	306, 632
MhlI	GDGCHC	2 cut(s)	330, 753
MlsI	TGGCCA	1 cut(s)	55
MluCI	AATT	6 cut(s)	146, 270, 367, 447, 780, 961
MluNI	TGGCCA	1 cut(s)	55
MmeI	TCCRAC	2 cut(s)	667, 855
Mox20I	TGGCCA	1 cut(s)	55
MscI	TGGCCA	1 cut(s)	55
MseI	TTAA	4 cut(s)	293, 366, 930, 1009
Msp20I	TGGCCA	1 cut(s)	55
MspCI	CTTAAG	1 cut(s)	292
MspI	CCGG	2 cut(s)	282, 899
MspR9I	CCNGG	1 cut(s)	864
Mva1269I	GAATGC	1 cut(s)	781
MvaI	CCWGG	1 cut(s)	864
NdeII	GATC	2 cut(s)	306, 632
NlaIV	GGNNCC	1 cut(s)	897
NmuCI	GTSAC	1 cut(s)	401
PagI	TCATGA	1 cut(s)	493
PaqCI	CACCTGC	1 cut(s)	17
PceI	AGGCCT	1 cut(s)	862
PcsI	WCGNNNNNNNCGW	1 cut(s)	377
PctI	GAATGC	1 cut(s)	781
PfeI	GAWTC	3 cut(s)	259, 672, 830
PkrI	GCNGC	2 cut(s)	887, 996
PshBI	ATTAAT	1 cut(s)	930
Psp124BI	GAGCTC	2 cut(s)	330, 753
Psp6I	CCWGG	1 cut(s)	862
PspGI	CCWGG	1 cut(s)	862
PspN4I	GGNNCC	1 cut(s)	897
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	2 cut(s)	306, 632
SacI	GAGCTC	2 cut(s)	330, 753
SaqAI	TTAA	4 cut(s)	293, 366, 930, 1009
SatI	GCNGC	2 cut(s)	886, 995
Sau3AI	GATC	2 cut(s)	306, 632
ScrFI	CCNGG	1 cut(s)	864
SduI	GDGCHC	2 cut(s)	330, 753
SfaNI	GCATC	1 cut(s)	754
SfcI	CTRYAG	1 cut(s)	130
SmlI	CTYRAG	4 cut(s)	292, 329, 624, 792
SmoI	CTYRAG	4 cut(s)	292, 329, 624, 792
Sse9I	AATT	6 cut(s)	146, 270, 367, 447, 780, 961
SseBI	AGGCCT	1 cut(s)	862
SsiI	CCGC	3 cut(s)	82, 193, 885
SspI	AATATT	1 cut(s)	714
SspMI	CTAG	3 cut(s)	104, 408, 426
SstI	GAGCTC	2 cut(s)	330, 753
StuI	AGGCCT	1 cut(s)	862
StyD4I	CCNGG	1 cut(s)	862
TaaI	ACNGT	2 cut(s)	565, 685
TaiI	ACGT	2 cut(s)	281, 383
TaqI	TCGA	1 cut(s)	204
TasI	AATT	6 cut(s)	146, 270, 367, 447, 780, 961
TauI	GCSGC	1 cut(s)	888
TfiI	GAWTC	3 cut(s)	259, 672, 830
Tru1I	TTAA	4 cut(s)	293, 366, 930, 1009
Tru9I	TTAA	4 cut(s)	293, 366, 930, 1009
TscAI	CASTG	3 cut(s)	568, 775, 825
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	1 cut(s)	994
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	4 cut(s)	109, 627, 664, 774
TspRI	CASTG	3 cut(s)	568, 775, 825
Vha464I	CTTAAG	1 cut(s)	292
VspI	ATTAAT	1 cut(s)	930
XcmI	CCANNNNNNNNNTGG	1 cut(s)	688
XmiI	GTMKAC	1 cut(s)	599
XspI	CTAG	3 cut(s)	104, 408, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.