Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0012638

Physical Location & Seq

Genomic Coordinates Forward (+)

11743683 .. 11748021

Gene Structure 4339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0143400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2322 bp

ATGGAGAACCAAACCCATCCCTTATGGCGCGTGCGATTAGCCGCTGCTCTCCGAACCGCCTTAGCCTGCACCATAGTCGGCTGTGCCACCCTCTACAGCCCGAAACCTATCCGCAATTTCTTAACGTACCCATCTTATTCTTACATGACAACAATCCTTATAGTCTCGGACGCAACCCTCGGCCAGACCCTTATGAGCTGTTGGCACGTGGTCTACGCCACGTGCCAGATGATGGCTTCTTCCGTGTTGGTCCTGTGGCTGGTTGGACCAGCACGGTTCACTAACGAGGTGGCGGCCGCGGCCATGGCCGTCAGCGTGTTTGTGGTGGCGCTGCCGGGGTCGACGCACTTGATGTCCAAGAGGATCGCGTTTGGGCAGTTTGTGAATGTTTACGTGGGTACTGTTGTTTATGGTGCTAATACTCGGATCGTCGTGCACCCAACTCAGGTGGCGGCGAGTACGGCACTTGGAGCTTTGGCTTCTGTTCTTGCTATGATGTTTCCATATCCTCGGCTAGCTTACTATGAGGTTAAGAATTCATGGCGTCTTTATGCTGAAAATGCTTCCCAGAGGTTAACTCAATTCGTCGAAGCAATATCTGCCCAAGACAATAGAGTAGCACTTGAATCCATTTCTAAAGGAAAATCTCTTTCCAAAGGAGCAGCTAAGCTTCTTCAAAGTATCAATCATAATCTGGAAGGTATGTTGTGGGAGAGACCAGATATCAAATTTCTAAGACCAAACCATAGGGAATTGGGACATAAGTTGCAAGAAATGGAGATACCAATTAAGGGGATGGAGATGGCTTTATCTTCGTGTTCTTCCTTTCCTGTTGATATGATCGACGAAGGGCTGAGAGATCATTTACGTAACTCACAGCTACAGATAAGCCTAAAACTACTGCAATCTAAGTACTCTGTGCCTTCGGAGGCAACAACAGTTCCAGAAGGTCAGACAGAAATCTTTGACAAGCCCCTTTGGACTAACAAAACCAACACCACAACCCATCAAGATCTCCCAGCTTTGTTCTTCTTGTACTGCATGGAACTCCTCTTAGGTGACTTCCCTATTGCTTGGAATCCCGGAAACACTCCAAAATGCAAAGATAAAAGAGGTGATTCACAGACTCAAGCACAGTGTATCTGCAAAAGGGTCTGGAGAAGCATTAGGCCAAGCCTCGGGAATTTTATTTTTGCCCTCAAGTGCTCAATCGCATTAGGGTTTGCTGTGTTACTTGGTTTGATTTACAACAAGGAGCAAGGTTACTGGTCGGGCCTCACCATCGCCATCAGCTTCATAACAGGACGACAAGCGACATTTACAGTTGCGAATGCTAGAGCACAAGGAACAGCACTGGGATCAGTCTATGGAATCATATTTTTATTTCTTTTTCAAAAAGTCGACCAGCTAAGGCTCTTACCGATCTTACCTTGGATTGTTTTCACTCATTTTCTTAGGCATAGCAAGATGTATGGCCCAGCTGGTGGGATCTCAGCGGCAATTGGGGCGTTGCTAATCTTAGGTAGAGAAAACTATGGTCAACCAAGTGCCTTTGCAATTGCAAGAATTGCAGAGGCTTGCATTGGACTGACCTGTTTCACTTTAGTAGAGGTTATTTTTTATCCTATGAGAGCAGCGACCCTAGCGAAAAATCAATTTTCGCAAAGCTTGGGGGCACTTGGAGATTGCGTCCAAGGCATAAACCTCTGTGTACCAGCTTCTACTGGACTGAGAGAAAAGCACAGGAAGCTAAAATCTCATGTCAAAAAACTGGAGACCTTCATTGAAGAAGCTGAAACGGAGCCTAACTTCTGGTTCTTGCCCTTTCAAGGTGATTGTTACAATAGGATCCTAGGATCCATGTCGAAAATGGTGGATCTTCTACCCTTTGTGGCCCACAACATAGACTTCATCTCACAGAAATCTGAAGGTGCTTCACAGGAGCTAAAACACCATATGAATACTGATCTGGCGCTTCTAAAAGTGAAGATCGGGTCTTCACTAAAATGCCTTGAGCAGGTGATTTCGATGAAATCCCTTGCAGCGTTTGAGAAAGAGGCGCAGAGCGAATACGATAGCGAAATGGGCATATCACCAAACCCGTTTATGATTTTGGGTACATGTGATGAAGAGGCTGACGCCATGGTAAGTAATTTCCTTCATCATATCAAAGAAGCAGTTGAGAGAGTACATAACAGGGATGGTGAAGTGAAGGATGTGAGCCAAATGGTTCTTTGTTTGAGTAGCCTGGGATTCTGCATCCGGAGTTTGACAGAAGAAACTATGAAGATCAAGGAAGAAGTAAGAAAACTTGTCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

773

Amino Acids

85.84

Weight (kDa)

8.62

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FUSC	PF04632	397 - 658	2.7e-15	Fusaric acid resistance protein family
FUSC_2	PF13515	409 - 533	2.4e-12	Fusaric acid resistance protein-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19450
malus_domestica	MD12G1030700.v1.1 MD14G1031200.v1.1
prunus_persica	Prupe.7G101800_v2.0.a1
pyrus_communis	pycom12g02860 pycom14g02810
rosa_chinensis	RchiOBHm_Chr3g0474771
rosa_multiflora	Rmu_co8493269.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406870
rosa_rugosa	Rorug03G0143300 Rorug03G0143300 Rorug03G0143300 Rorug03G0143400 Rorug03G0143500.1 Rorug03G0143600
rosa_samantha	Rh3AG193500 Rh3BG223300 Rh3CG218100
rosa_wichuraiana	Rw3G017630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2008
Acc36I	ACCTGC	1 cut(s)	2008
AccB7I	CCANNNNNTGG	2 cut(s)	232, 1484
AccI	GTMKAC	3 cut(s)	213, 341, 1401
AccII	CGCG	3 cut(s)	30, 299, 368
AccIII	TCCGGA	1 cut(s)	2262
AciI	CCGC	8 cut(s)	42, 57, 112, 293, 297, 299, 452, 1496
AclWI	GGATC	9 cut(s)	371, 434, 1366, 1496, 1843, 1851, 1856, 1864, 1884
AcoI	YGGCCR	4 cut(s)	181, 294, 300, 306
AcsI	RAATTY	3 cut(s)	535, 728, 1183
AcuI	CTGAAG	1 cut(s)	1947
AcvI	CACGTG	2 cut(s)	208, 222
AcyI	GRCGYC	2 cut(s)	544, 2139
AfaI	GTAC	8 cut(s)	128, 400, 460, 914, 1037, 1713, 2119, 2190
AfiI	CCNNNNNNNGG	8 cut(s)	232, 259, 445, 791, 1178, 1484, 1829, 2017
AflIII	ACRYGT	1 cut(s)	2120
AgsI	TTSAA	5 cut(s)	626, 677, 1394, 1787, 1829
AjnI	CCWGG	1 cut(s)	2247
Alw21I	GWGCWC	3 cut(s)	438, 1208, 1342
Alw26I	GTCTC	3 cut(s)	169, 709, 1769
Alw44I	GTGCAC	1 cut(s)	434
AlwI	GGATC	9 cut(s)	371, 434, 1366, 1496, 1843, 1851, 1856, 1864, 1884
Ama87I	CYCGRG	1 cut(s)	1178
Aor13HI	TCCGGA	1 cut(s)	2262
AoxI	GGCC	8 cut(s)	181, 294, 300, 306, 1169, 1273, 1474, 1893
ApaLI	GTGCAC	1 cut(s)	434
ApeKI	GCWGC	5 cut(s)	44, 331, 662, 1634, 2042
ApoI	RAATTY	3 cut(s)	535, 728, 1183
AspA2I	CCTAGG	1 cut(s)	1852
AspLEI	GCGC	4 cut(s)	30, 331, 1975, 2062
AspS9I	GGNCC	5 cut(s)	250, 266, 1273, 1475, 1894
AsuC2I	CCSGG	2 cut(s)	336, 1083
AsuHPI	GGTGA	7 cut(s)	1070, 1127, 1270, 1844, 2032, 2085, 2216
AsuNHI	GCTAGC	1 cut(s)	514
AvaI	CYCGRG	1 cut(s)	1178
AvaII	GGWCC	2 cut(s)	250, 266
AvrII	CCTAGG	1 cut(s)	1852
BaeGI	GKGCMC	2 cut(s)	438, 1678
BaeI	ACNNNNGTAYC	2 cut(s)	390, 423
BamHI	GGATCC	2 cut(s)	1848, 1856
BbrPI	CACGTG	2 cut(s)	208, 222
BbsI	GAAGAC	1 cut(s)	1989
Bbv12I	GWGCWC	3 cut(s)	438, 1208, 1342
BbvI	GCAGC	5 cut(s)	31, 318, 674, 1646, 2054
BccI	CCATC	9 cut(s)	24, 139, 226, 790, 796, 1014, 1289, 1295, 2195
BceAI	ACGGC	2 cut(s)	293, 477
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciT130I	CCWGG	1 cut(s)	2249
BcnI	CCSGG	2 cut(s)	336, 1083
BcoDI	GTCTC	3 cut(s)	169, 709, 1769
BfaI	CTAG	4 cut(s)	515, 1335, 1643, 1853
BfmI	CTRYAG	2 cut(s)	94, 881
BfoI	RGCGCY	2 cut(s)	332, 1976
BfuAI	ACCTGC	1 cut(s)	2008
BglII	AGATCT	1 cut(s)	1012
BlnI	CCTAGG	1 cut(s)	1852
BlpI	GCTNAGC	1 cut(s)	666
BmcAI	AGTACT	1 cut(s)	914
Bme1390I	CCNGG	3 cut(s)	336, 1083, 2249
Bme18I	GGWCC	2 cut(s)	250, 266
BmeT110I	CYCGRG	1 cut(s)	1178
BmgT120I	GGNCC	5 cut(s)	250, 266, 1273, 1475, 1894
BmiI	GGNNCC	3 cut(s)	1803, 1850, 1858
BmrFI	CCNGG	3 cut(s)	336, 1083, 2249
BmrI	ACTGGG	1 cut(s)	1364
BmsI	GCATC	1 cut(s)	2268
BmtI	GCTAGC	1 cut(s)	518
BmuI	ACTGGG	1 cut(s)	1364
BpiI	GAAGAC	1 cut(s)	1989
BplI	GAGNNNNNCTC	2 cut(s)	562, 594
BpmI	CTGGAG	2 cut(s)	1177, 1793
Bpu10I	CCTNAGC	2 cut(s)	61, 1409
Bpu1102I	GCTNAGC	1 cut(s)	666
BpuEI	CTTGAG	3 cut(s)	1113, 1184, 2033
BpuMI	CCSGG	2 cut(s)	336, 1083
BsaAI	YACGTR	4 cut(s)	208, 222, 394, 869
BsaHI	GRCGYC	2 cut(s)	544, 2139
BsaI	GGTCTC	2 cut(s)	709, 1769
BsaWI	WCCGGW	1 cut(s)	2262
BsaXI	ACNNNNNCTCC	2 cut(s)	1674, 1704
Bsc4I	CCNNNNNNNGG	8 cut(s)	232, 259, 445, 791, 1178, 1484, 1829, 2017
Bse1I	ACTGG	4 cut(s)	1271, 1359, 1729, 1776
BseAI	TCCGGA	1 cut(s)	2262
BseBI	CCWGG	1 cut(s)	2249
BseGI	GGATG	5 cut(s)	16, 801, 2206, 2221, 2259
BseLI	CCNNNNNNNGG	8 cut(s)	232, 259, 445, 791, 1178, 1484, 1829, 2017
BseMII	CTCAG	4 cut(s)	458, 845, 1506, 1721
BseNI	ACTGG	4 cut(s)	1271, 1359, 1729, 1776
BseRI	GAGGAG	1 cut(s)	1040
BseSI	GKGCMC	2 cut(s)	438, 1678
BseX3I	CGGCCG	1 cut(s)	294
BseXI	GCAGC	5 cut(s)	31, 318, 674, 1646, 2054
BseYI	CCCAGC	2 cut(s)	1018, 1477
BsgI	GTGCAG	1 cut(s)	52
Bsh1236I	CGCG	3 cut(s)	30, 299, 368
Bsh1285I	CGRYCG	1 cut(s)	297
BshFI	GGCC	8 cut(s)	183, 296, 302, 308, 1171, 1275, 1476, 1895
BsiEI	CGRYCG	1 cut(s)	297
BsiHKAI	GWGCWC	3 cut(s)	438, 1208, 1342
BsiHKCI	CYCGRG	1 cut(s)	1178
BsiSI	CCGG	3 cut(s)	335, 1083, 2263
BslFI	GGGAC	1 cut(s)	771
BslI	CCNNNNNNNGG	8 cut(s)	232, 259, 445, 791, 1178, 1484, 1829, 2017
BsmAI	GTCTC	3 cut(s)	169, 709, 1769
BsmFI	GGGAC	1 cut(s)	771
BsmI	GAATGC	1 cut(s)	1336
BsnI	GGCC	8 cut(s)	183, 296, 302, 308, 1171, 1275, 1476, 1895
Bso31I	GGTCTC	2 cut(s)	709, 1769
BsoBI	CYCGRG	1 cut(s)	1178
Bsp1286I	GDGCHC	4 cut(s)	438, 1208, 1342, 1678
Bsp13I	TCCGGA	1 cut(s)	2262
Bsp1720I	GCTNAGC	1 cut(s)	666
Bsp19I	CCATGG	2 cut(s)	303, 2142
BspACI	CCGC	8 cut(s)	42, 57, 112, 293, 297, 299, 452, 1496
BspANI	GGCC	8 cut(s)	183, 296, 302, 308, 1171, 1275, 1476, 1895
BspCNI	CTCAG	4 cut(s)	457, 846, 1505, 1722
BspEI	TCCGGA	1 cut(s)	2262
BspFNI	CGCG	3 cut(s)	30, 299, 368
BspLI	GGNNCC	3 cut(s)	1803, 1850, 1858
BspMI	ACCTGC	1 cut(s)	2008
BspOI	GCTAGC	1 cut(s)	518
BspPI	GGATC	9 cut(s)	371, 434, 1366, 1496, 1843, 1851, 1856, 1864, 1884
BspTNI	GGTCTC	2 cut(s)	709, 1769
BsrI	ACTGG	4 cut(s)	1271, 1359, 1729, 1776
BssNI	GRCGYC	2 cut(s)	544, 2139
BssT1I	CCWWGG	5 cut(s)	303, 1430, 1693, 1852, 2142
Bst2UI	CCWGG	1 cut(s)	2249
Bst4CI	ACNGT	5 cut(s)	276, 403, 940, 1137, 1324
Bst6I	CTCTTC	1 cut(s)	2124
BstACI	GRCGYC	2 cut(s)	544, 2139
BstAPI	GCANNNNNTGC	2 cut(s)	599, 1568
BstBAI	YACGTR	4 cut(s)	208, 222, 394, 869
BstC8I	GCNNGC	4 cut(s)	32, 67, 516, 1579
BstDSI	CCRYGG	3 cut(s)	297, 303, 2142
BstENI	CCTNNNNNAGG	1 cut(s)	2015
BstF5I	GGATG	5 cut(s)	16, 801, 2206, 2221, 2259
BstFNI	CGCG	3 cut(s)	30, 299, 368
BstH2I	RGCGCY	2 cut(s)	332, 1976
BstHHI	GCGC	4 cut(s)	30, 331, 1975, 2062
BstMAI	GTCTC	3 cut(s)	169, 709, 1769
BstMCI	CGRYCG	1 cut(s)	297
BstNI	CCWGG	1 cut(s)	2249
BstNSI	RCATGY	1 cut(s)	2124
BstSCI	CCNGG	3 cut(s)	334, 1081, 2247
BstSFI	CTRYAG	2 cut(s)	94, 881
BstSLI	GKGCMC	2 cut(s)	438, 1678
BstSNI	TACGTA	1 cut(s)	869
BstUI	CGCG	3 cut(s)	30, 299, 368
BstV1I	GCAGC	5 cut(s)	31, 318, 674, 1646, 2054
BstV2I	GAAGAC	1 cut(s)	1989
BstX2I	RGATCY	5 cut(s)	1012, 1488, 1848, 1856, 1876
BstYI	RGATCY	5 cut(s)	1012, 1488, 1848, 1856, 1876
BstZI	CGGCCG	1 cut(s)	294
BsuRI	GGCC	8 cut(s)	183, 296, 302, 308, 1171, 1275, 1476, 1895
BtgI	CCRYGG	3 cut(s)	297, 303, 2142
BtgZI	GCGATG	1 cut(s)	1267
BtsCI	GGATG	5 cut(s)	16, 801, 2206, 2221, 2259
BtsIMutI	CAGTG	2 cut(s)	1142, 1352
BveI	ACCTGC	1 cut(s)	2008
Cac8I	GCNNGC	4 cut(s)	32, 67, 516, 1579
CciNI	GCGGCCGC	1 cut(s)	294
CfoI	GCGC	4 cut(s)	30, 331, 1975, 2062
Cfr13I	GGNCC	5 cut(s)	250, 266, 1273, 1475, 1894
Cfr42I	CCGCGG	1 cut(s)	300
CseI	GACGC	5 cut(s)	179, 352, 533, 1678, 2147
Csp6I	GTAC	8 cut(s)	127, 399, 459, 913, 1036, 1712, 2118, 2189
CspCI	CAANNNNNGTGG	2 cut(s)	429, 464
CviAII	CATG	8 cut(s)	145, 304, 540, 1042, 1760, 1861, 2121, 2143
CviQI	GTAC	8 cut(s)	127, 399, 459, 913, 1036, 1712, 2118, 2189
EaeI	YGGCCR	4 cut(s)	181, 294, 300, 306
EagI	CGGCCG	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	2124
EarI	CTCTTC	1 cut(s)	2124
EclXI	CGGCCG	1 cut(s)	294
Eco105I	TACGTA	1 cut(s)	869
Eco130I	CCWWGG	5 cut(s)	303, 1430, 1693, 1852, 2142
Eco31I	GGTCTC	2 cut(s)	709, 1769
Eco32I	GATATC	1 cut(s)	724
Eco47I	GGWCC	2 cut(s)	250, 266
Eco52I	CGGCCG	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	1947
Eco72I	CACGTG	2 cut(s)	208, 222
Eco88I	CYCGRG	1 cut(s)	1178
EcoNI	CCTNNNNNAGG	1 cut(s)	2015
EcoRI	GAATTC	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	2247
EcoRV	GATATC	1 cut(s)	724
EcoT14I	CCWWGG	5 cut(s)	303, 1430, 1693, 1852, 2142
ErhI	CCWWGG	5 cut(s)	303, 1430, 1693, 1852, 2142
FaeI	CATG	8 cut(s)	148, 307, 543, 1045, 1763, 1864, 2124, 2146
FaqI	GGGAC	1 cut(s)	771
FatI	CATG	8 cut(s)	144, 303, 539, 1041, 1759, 1860, 2120, 2142
FauNDI	CATATG	1 cut(s)	1956
FblI	GTMKAC	3 cut(s)	213, 341, 1401
FokI	GGATG	5 cut(s)	3, 808, 2213, 2228, 2246
FspBI	CTAG	4 cut(s)	515, 1335, 1643, 1853
GlaI	GCGC	4 cut(s)	29, 330, 1974, 2061
GsaI	CCCAGC	2 cut(s)	1022, 1481
GsuI	CTGGAG	2 cut(s)	1177, 1793
HaeII	RGCGCY	2 cut(s)	332, 1976
HaeIII	GGCC	8 cut(s)	183, 296, 302, 308, 1171, 1275, 1476, 1895
HapII	CCGG	3 cut(s)	335, 1083, 2263
HgaI	GACGC	5 cut(s)	179, 352, 533, 1678, 2147
HhaI	GCGC	4 cut(s)	30, 331, 1975, 2062
Hin1I	GRCGYC	2 cut(s)	544, 2139
Hin1II	CATG	8 cut(s)	148, 307, 543, 1045, 1763, 1864, 2124, 2146
Hin6I	GCGC	4 cut(s)	28, 329, 1973, 2060
HinP1I	GCGC	4 cut(s)	28, 329, 1973, 2060
HincII	GTYRAC	4 cut(s)	342, 576, 1402, 1541
HindII	GTYRAC	4 cut(s)	342, 576, 1402, 1541
HindIII	AAGCTT	2 cut(s)	668, 1666
HinfI	GANTC	6 cut(s)	626, 1078, 1118, 1126, 1371, 2253
HpaI	GTTAAC	1 cut(s)	576
HpaII	CCGG	3 cut(s)	335, 1083, 2263
HphI	GGTGA	7 cut(s)	1070, 1127, 1270, 1844, 2032, 2085, 2216
Hpy166II	GTNNAC	9 cut(s)	214, 279, 342, 391, 436, 576, 1402, 1541, 1712
Hpy188I	TCNGA	6 cut(s)	53, 169, 426, 928, 954, 1927
Hpy188III	TCNNGA	6 cut(s)	695, 944, 1010, 1156, 1180, 2263
Hpy8I	GTNNAC	9 cut(s)	214, 279, 342, 391, 436, 576, 1402, 1541, 1712
Hpy99I	CGWCG	4 cut(s)	346, 434, 590, 848
HpyAV	CCTTC	8 cut(s)	692, 842, 933, 941, 1789, 1922, 2168, 2206
HpyCH4III	ACNGT	5 cut(s)	276, 403, 940, 1137, 1324
HpyCH4IV	ACGT	5 cut(s)	125, 207, 221, 393, 868
HpySE526I	ACGT	5 cut(s)	125, 207, 221, 393, 868
Hsp92I	GRCGYC	2 cut(s)	544, 2139
Hsp92II	CATG	8 cut(s)	148, 307, 543, 1045, 1763, 1864, 2124, 2146
HspAI	GCGC	4 cut(s)	28, 329, 1973, 2060
Kpn2I	TCCGGA	1 cut(s)	2262
KspAI	GTTAAC	1 cut(s)	576
KspI	CCGCGG	1 cut(s)	300
LmnI	GCTCC	5 cut(s)	470, 659, 1255, 1801, 1942
Lsp1109I	GCAGC	5 cut(s)	31, 318, 674, 1646, 2054
LweI	GCATC	1 cut(s)	2268
MaeI	CTAG	4 cut(s)	515, 1335, 1643, 1853
MaeII	ACGT	5 cut(s)	125, 207, 221, 393, 868
MaeIII	GTNAC	5 cut(s)	869, 1058, 1230, 1262, 1838
MfeI	CAATTG	2 cut(s)	1500, 1557
MflI	RGATCY	5 cut(s)	1012, 1488, 1848, 1856, 1876
MhlI	GDGCHC	4 cut(s)	438, 1208, 1342, 1678
MlyI	GAGTC	1 cut(s)	1120
MmeI	TCCRAC	1 cut(s)	244
MroI	TCCGGA	1 cut(s)	2262
MseI	TTAA	4 cut(s)	122, 531, 575, 789
MslI	CAYNNNNRTG	1 cut(s)	2005
MspA1I	CMGCKG	4 cut(s)	44, 299, 1481, 1496
MspI	CCGG	3 cut(s)	335, 1083, 2263
MspR9I	CCNGG	3 cut(s)	336, 1083, 2249
MunI	CAATTG	2 cut(s)	1500, 1557
Mva1269I	GAATGC	1 cut(s)	1336
MvaI	CCWGG	1 cut(s)	2249
MvnI	CGCG	3 cut(s)	30, 299, 368
NciI	CCSGG	2 cut(s)	336, 1083
NcoI	CCATGG	2 cut(s)	303, 2142
NdeI	CATATG	1 cut(s)	1956
NheI	GCTAGC	1 cut(s)	514
NlaIII	CATG	8 cut(s)	148, 307, 543, 1045, 1763, 1864, 2124, 2146
NlaIV	GGNNCC	3 cut(s)	1803, 1850, 1858
NmeAIII	GCCGAG	2 cut(s)	159, 490
NmuCI	GTSAC	1 cut(s)	1058
NotI	GCGGCCGC	1 cut(s)	294
NspI	RCATGY	1 cut(s)	2124
PaqCI	CACCTGC	1 cut(s)	2008
PciI	ACATGT	1 cut(s)	2120
PctI	GAATGC	1 cut(s)	1336
PfeI	GAWTC	5 cut(s)	626, 1078, 1118, 1371, 2253
PflMI	CCANNNNNTGG	2 cut(s)	232, 1484
PfoI	TCCNGGA	1 cut(s)	1081
PleI	GAGTC	1 cut(s)	1120
PmaCI	CACGTG	2 cut(s)	208, 222
PmlI	CACGTG	2 cut(s)	208, 222
PpsI	GAGTC	1 cut(s)	1120
Ppu21I	YACGTR	4 cut(s)	208, 222, 394, 869
PscI	ACATGT	1 cut(s)	2120
Psp6I	CCWGG	1 cut(s)	2247
PspCI	CACGTG	2 cut(s)	208, 222
PspFI	CCCAGC	2 cut(s)	1018, 1477
PspGI	CCWGG	1 cut(s)	2247
PspN4I	GGNNCC	3 cut(s)	1803, 1850, 1858
PspPI	GGNCC	5 cut(s)	250, 266, 1273, 1475, 1894
PsuI	RGATCY	5 cut(s)	1012, 1488, 1848, 1856, 1876
PvuII	CAGCTG	1 cut(s)	1481
RsaI	GTAC	8 cut(s)	128, 400, 460, 914, 1037, 1713, 2119, 2190
RsaNI	GTAC	8 cut(s)	127, 399, 459, 913, 1036, 1712, 2118, 2189
RseI	CAYNNNNRTG	1 cut(s)	2005
SacII	CCGCGG	1 cut(s)	300
SalI	GTCGAC	2 cut(s)	340, 1400
SaqAI	TTAA	4 cut(s)	122, 531, 575, 789
Sau96I	GGNCC	5 cut(s)	250, 266, 1273, 1475, 1894
ScaI	AGTACT	1 cut(s)	914
SchI	GAGTC	1 cut(s)	1120
ScrFI	CCNGG	3 cut(s)	336, 1083, 2249
SduI	GDGCHC	4 cut(s)	438, 1208, 1342, 1678
SfaNI	GCATC	1 cut(s)	2268
SfcI	CTRYAG	2 cut(s)	94, 881
Sfr303I	CCGCGG	1 cut(s)	300
SgrBI	CCGCGG	1 cut(s)	300
SinI	GGWCC	2 cut(s)	250, 266
SmiMI	CAYNNNNRTG	1 cut(s)	2005
SmlI	CTYRAG	3 cut(s)	1128, 1199, 2012
SmoI	CTYRAG	3 cut(s)	1128, 1199, 2012
SnaBI	TACGTA	1 cut(s)	869
SsiI	CCGC	8 cut(s)	42, 57, 112, 293, 297, 299, 452, 1496
SspMI	CTAG	4 cut(s)	515, 1335, 1643, 1853
StyD4I	CCNGG	3 cut(s)	334, 1081, 2247
StyI	CCWWGG	5 cut(s)	303, 1430, 1693, 1852, 2142
TaaI	ACNGT	5 cut(s)	276, 403, 940, 1137, 1324
TaiI	ACGT	5 cut(s)	128, 210, 224, 396, 871
TaqI	TCGA	7 cut(s)	341, 588, 843, 1401, 1865, 2027, 2316
TatI	WGTACW	3 cut(s)	912, 1035, 2188
TauI	GCSGC	6 cut(s)	44, 296, 299, 302, 455, 1499
TfiI	GAWTC	5 cut(s)	626, 1078, 1118, 1371, 2253
Tru1I	TTAA	4 cut(s)	122, 531, 575, 789
Tru9I	TTAA	4 cut(s)	122, 531, 575, 789
TscAI	CASTG	2 cut(s)	1142, 1359
TseFI	GTSAC	1 cut(s)	1058
TseI	GCWGC	5 cut(s)	44, 331, 662, 1634, 2042
Tsp45I	GTSAC	1 cut(s)	1058
TspDTI	ATGAA	9 cut(s)	528, 1285, 1771, 1900, 1973, 2045, 2142, 2150, 2300
TspGWI	ACGGA	2 cut(s)	232, 1814
TspRI	CASTG	2 cut(s)	1142, 1359
Van91I	CCANNNNNTGG	2 cut(s)	232, 1484
VneI	GTGCAC	1 cut(s)	434
VpaK11BI	GGWCC	2 cut(s)	250, 266
XagI	CCTNNNNNAGG	1 cut(s)	2015
XapI	RAATTY	3 cut(s)	535, 728, 1183
XceI	RCATGY	1 cut(s)	2124
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1867
XmaJI	CCTAGG	1 cut(s)	1852
XmiI	GTMKAC	3 cut(s)	213, 341, 1401
XspI	CTAG	4 cut(s)	515, 1335, 1643, 1853
ZrmI	AGTACT	1 cut(s)	914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.