Prupe.7G123200_v2.0.a1

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0016881
Physical Location & Seq
Reverse (-)
14564901 .. 14565872
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G123200.1

Sequence Viewer

Length: 972 bp
GGAGGAGCTGCACCCTCAGGATCTTACTTCACACCCCTTCTGATTTCCATGGGAGGCATAGTCTCCACAACCCTAGCAATAGTTGCATACCATTTCATTGTGGTTAGGTTCTGCCTCAGGAGAAGGCAGAGGCTGATGCAGATGCAATTACAAGCAAGCCTCTCGCAGCAACCACCAATCAGCCAATCCAATGGGGTTGATGAGAAAGTCCTAAGTTCAATCCCAATTCTCTCATACTCAACCAAAAATTGTGAACTTTTTCAGGTCGATCAAAGCGAGTGTGTGATTTGCTTGGGTGAGCTAGAAGATGGAGATATGGTGCGTTTGTTGCCCAACTGCAAGCATGTGTTCCACAATCCATGCATAGACAAATGGTTTTTGGGACATACAAATTGTCCAGTTTGTAGGGCAGCCATAGCTGTGCCTATTGTCTCTGTGGCAGCATTGCCTGTGGAAAATGATCATGATCAAGTTAGAGACAGAGAAGTGGAAGCAGAAGTAGAAGCAGAAGCCGAAACCGGGATTAATTACTCACCACACCCTCATGATCCAGAGCAGGGTGTACCTAGCGCTTCTATTACTACTACGAATTCAACCCAATTACCAAAACCAAATTGTTTGCTTAGGCATTGTGTGTCTCTGGTGGTGTTGCCTATAGAGGAGCATAATAAGCAGCGAAGTTTTGCGAAGGGGTTGGAGAGGTCTTTGTCTTTGGATCAATCCCATGTTCTTATTGACATATACAGAGAAAGTGATGACAAGCCCTCTTCTTCATCTTCAATATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCATCGAAACCGGTTCTTGTGCAGTGTGGATCATTGAAGGCACGATCGATGAGGCAGCTAGATCGAATGTCCTCAGTTTTAGTAAGATCTCTTTCCCAACTGCGGATGAGCCAGAGTATCAGCATAGCTAATGGCCAAGGGGTTCTTCCTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

324

Amino Acids

35.18

Weight (kDa)

6.38

Isoelectric Point (pI)

58.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016881)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g17171
malus_domestica MD12G1103100.v1.1 MD14G1097100.v1.1
prunus_persica Prupe.7G123200_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0471271
rosa_laevigata RLG00000024192
rosa_multiflora Rmu_ssc0000091.1_g000001
rosa_roxburghii Rroxscaffold_6G00410150
rosa_rugosa Rorug03G0116700
rosa_samantha Rh3AG166000 Rh3BG191400 Rh3CG181700 Rh3DG184300
rosa_wichuraiana Rw3G015620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 919
AclWI GGATC 4 cut(s) 28, 542, 723, 853
AcoI YGGCCR 1 cut(s) 949
AcsI RAATTY 1 cut(s) 589
AfaI GTAC 1 cut(s) 564
AfeI AGCGCT 1 cut(s) 571
AfiI CCNNNNNNNGG 3 cut(s) 519, 557, 918
AgeI ACCGGT 1 cut(s) 826
AgsI TTSAA 4 cut(s) 219, 594, 780, 853
AjuI GAANNNNNNNTTGG 1 cut(s) 945
AluBI AGCT 5 cut(s) 8, 301, 419, 874, 944
AluI AGCT 5 cut(s) 8, 301, 419, 874, 944
Alw26I GTCTC 4 cut(s) 67, 436, 471, 642
AlwI GGATC 4 cut(s) 28, 542, 723, 853
AlwNI CAGNNNCTG 1 cut(s) 133
Aor51HI AGCGCT 1 cut(s) 571
AoxI GGCC 1 cut(s) 949
ApeKI GCWGC 6 cut(s) 8, 166, 410, 440, 673, 871
ApoI RAATTY 1 cut(s) 589
AseI ATTAAT 1 cut(s) 525
AsiGI ACCGGT 1 cut(s) 826
Asp700I GAANNNNTTC 1 cut(s) 258
AspLEI GCGC 1 cut(s) 572
AsuC2I CCSGG 1 cut(s) 520
AsuHPI GGTGA 2 cut(s) 308, 525
AxyI CCTNAGG 2 cut(s) 16, 116
BalI TGGCCA 1 cut(s) 951
BbvI GCAGC 5 cut(s) 178, 422, 452, 685, 883
BccI CCATC 1 cut(s) 302
BcgI CGANNNNNNTGC 4 cut(s) 144, 178, 860, 894
BclI TGATCA 2 cut(s) 460, 466
BcnI CCSGG 1 cut(s) 520
BcoDI GTCTC 4 cut(s) 67, 436, 471, 642
BfaI CTAG 4 cut(s) 74, 302, 567, 875
BfmI CTRYAG 1 cut(s) 654
BfoI RGCGCY 1 cut(s) 573
BglII AGATCT 1 cut(s) 902
BisI GCNGC 6 cut(s) 9, 167, 411, 441, 674, 872
BlsI GCNGC 6 cut(s) 10, 168, 412, 442, 675, 873
Bme1390I CCNGG 1 cut(s) 520
BmrFI CCNGG 1 cut(s) 520
BmsI GCATC 2 cut(s) 126, 132
Bpu10I CCTNAGC 1 cut(s) 623
BpuMI CCSGG 1 cut(s) 520
Bsa29I ATCGAT 1 cut(s) 863
BsaBI GATNNNNATC 1 cut(s) 465
BsaJI CCNNGG 2 cut(s) 48, 952
BsaWI WCCGGW 1 cut(s) 826
BsaXI ACNNNNNCTCC 4 cut(s) 45, 75, 303, 333
Bsc4I CCNNNNNNNGG 3 cut(s) 519, 557, 918
Bse118I RCCGGY 1 cut(s) 826
Bse1I ACTGG 1 cut(s) 398
Bse21I CCTNAGG 2 cut(s) 16, 116
Bse3DI GCAATG 1 cut(s) 443
Bse8I GATNNNNATC 1 cut(s) 465
BseCI ATCGAT 1 cut(s) 863
BseDI CCNNGG 2 cut(s) 48, 952
BseGI GGATG 1 cut(s) 927
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 3 cut(s) 519, 557, 918
BseMI GCAATG 1 cut(s) 443
BseMII CTCAG 3 cut(s) 30, 130, 903
BseNI ACTGG 1 cut(s) 398
BseRI GAGGAG 2 cut(s) 18, 674
BseXI GCAGC 5 cut(s) 178, 422, 452, 685, 883
BsgI GTGCAG 1 cut(s) 857
Bsh1285I CGRYCG 1 cut(s) 863
BshFI GGCC 1 cut(s) 951
BshTI ACCGGT 1 cut(s) 826
BshVI ATCGAT 1 cut(s) 863
BsiEI CGRYCG 1 cut(s) 863
BsiSI CCGG 2 cut(s) 519, 827
BslFI GGGAC 1 cut(s) 396
BslI CCNNNNNNNGG 3 cut(s) 519, 557, 918
BsmAI GTCTC 4 cut(s) 67, 436, 471, 642
BsmFI GGGAC 1 cut(s) 396
BsnI GGCC 1 cut(s) 951
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 1 cut(s) 919
BspANI GGCC 1 cut(s) 951
BspCNI CTCAG 3 cut(s) 29, 129, 902
BspDI ATCGAT 1 cut(s) 863
BspHI TCATGA 2 cut(s) 463, 544
BspPI GGATC 4 cut(s) 28, 542, 723, 853
BsrDI GCAATG 1 cut(s) 443
BsrFI RCCGGY 1 cut(s) 826
BsrI ACTGG 1 cut(s) 398
BssAI RCCGGY 1 cut(s) 826
BssECI CCNNGG 2 cut(s) 48, 952
BssT1I CCWWGG 2 cut(s) 48, 952
Bst6I CTCTTC 1 cut(s) 772
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 2 cut(s) 157, 341
BstDEI CTNAG 5 cut(s) 16, 116, 212, 623, 889
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 927
BstH2I RGCGCY 1 cut(s) 573
BstHHI GCGC 1 cut(s) 572
BstMAI GTCTC 4 cut(s) 67, 436, 471, 642
BstMCI CGRYCG 1 cut(s) 863
BstMWI GCNNNNNNNGC 4 cut(s) 83, 328, 416, 670
BstNSI RCATGY 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 518
BstSFI CTRYAG 1 cut(s) 654
BstV1I GCAGC 5 cut(s) 178, 422, 452, 685, 883
BstX2I RGATCY 2 cut(s) 20, 902
BstXI CCANNNNNNTGG 1 cut(s) 191
BstYI RGATCY 2 cut(s) 20, 902
Bsu15I ATCGAT 1 cut(s) 863
Bsu36I CCTNAGG 2 cut(s) 16, 116
BsuRI GGCC 1 cut(s) 951
BsuTUI ATCGAT 1 cut(s) 863
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 1 cut(s) 927
BtsI GCAGTG 1 cut(s) 845
BtsIMutI CAGTG 1 cut(s) 845
Cac8I GCNNGC 2 cut(s) 157, 341
CaiI CAGNNNCTG 1 cut(s) 133
CciI TCATGA 2 cut(s) 463, 544
CfoI GCGC 1 cut(s) 572
Cfr10I RCCGGY 1 cut(s) 826
ClaI ATCGAT 1 cut(s) 863
Csp6I GTAC 1 cut(s) 563
CspAI ACCGGT 1 cut(s) 826
CviAII CATG 6 cut(s) 49, 344, 360, 464, 545, 725
CviQI GTAC 1 cut(s) 563
DdeI CTNAG 5 cut(s) 16, 116, 212, 623, 889
EaeI YGGCCR 1 cut(s) 949
Eam1104I CTCTTC 1 cut(s) 772
EarI CTCTTC 1 cut(s) 772
Eco130I CCWWGG 2 cut(s) 48, 952
Eco47III AGCGCT 1 cut(s) 571
Eco81I CCTNAGG 2 cut(s) 16, 116
EcoRI GAATTC 1 cut(s) 589
EcoT14I CCWWGG 2 cut(s) 48, 952
EcoT22I ATGCAT 1 cut(s) 365
ErhI CCWWGG 2 cut(s) 48, 952
FaeI CATG 6 cut(s) 52, 347, 363, 467, 548, 728
FalI AAGNNNNNCTT 1 cut(s) 945
FaqI GGGAC 1 cut(s) 396
FatI CATG 6 cut(s) 48, 343, 359, 463, 544, 724
FbaI TGATCA 2 cut(s) 460, 466
Fnu4HI GCNGC 6 cut(s) 9, 167, 411, 441, 674, 872
FokI GGATG 1 cut(s) 934
Fsp4HI GCNGC 6 cut(s) 9, 167, 411, 441, 674, 872
FspBI CTAG 4 cut(s) 74, 302, 567, 875
GlaI GCGC 1 cut(s) 571
GluI GCNGC 6 cut(s) 9, 167, 411, 441, 674, 872
HaeII RGCGCY 1 cut(s) 573
HaeIII GGCC 1 cut(s) 951
HapII CCGG 2 cut(s) 519, 827
HhaI GCGC 1 cut(s) 572
Hin1II CATG 6 cut(s) 52, 347, 363, 467, 548, 728
Hin6I GCGC 1 cut(s) 570
HinP1I GCGC 1 cut(s) 570
HpaII CCGG 2 cut(s) 519, 827
HphI GGTGA 2 cut(s) 308, 525
Hpy166II GTNNAC 2 cut(s) 254, 563
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 5 cut(s) 18, 118, 464, 545, 551
Hpy8I GTNNAC 2 cut(s) 254, 563
HpyAV CCTTC 5 cut(s) 47, 117, 682, 825, 847
HpyCH4V TGCA 7 cut(s) 11, 86, 139, 145, 339, 363, 838
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 328, 416, 670
HpyF3I CTNAG 5 cut(s) 16, 116, 212, 623, 889
Hsp92II CATG 6 cut(s) 52, 347, 363, 467, 548, 728
HspAI GCGC 1 cut(s) 570
Ksp22I TGATCA 2 cut(s) 460, 466
LmnI GCTCC 2 cut(s) 5, 661
Lsp1109I GCAGC 5 cut(s) 178, 422, 452, 685, 883
LweI GCATC 2 cut(s) 126, 132
MaeI CTAG 4 cut(s) 74, 302, 567, 875
MflI RGATCY 2 cut(s) 20, 902
MlsI TGGCCA 1 cut(s) 951
MluCI AATT 8 cut(s) 146, 225, 247, 391, 526, 589, 599, 613
MluNI TGGCCA 1 cut(s) 951
MmeI TCCRAC 1 cut(s) 675
Mox20I TGGCCA 1 cut(s) 951
Mph1103I ATGCAT 1 cut(s) 365
MroXI GAANNNNTTC 1 cut(s) 258
MscI TGGCCA 1 cut(s) 951
MseI TTAA 1 cut(s) 525
MslI CAYNNNNRTG 2 cut(s) 419, 543
Msp20I TGGCCA 1 cut(s) 951
MspI CCGG 2 cut(s) 519, 827
MspR9I CCNGG 1 cut(s) 520
MwoI GCNNNNNNNGC 4 cut(s) 83, 328, 416, 670
NciI CCSGG 1 cut(s) 520
NcoI CCATGG 1 cut(s) 48
NlaIII CATG 6 cut(s) 52, 347, 363, 467, 548, 728
NsiI ATGCAT 1 cut(s) 365
NspI RCATGY 1 cut(s) 347
PagI TCATGA 2 cut(s) 463, 544
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PdmI GAANNNNTTC 1 cut(s) 258
PinAI ACCGGT 1 cut(s) 826
PkrI GCNGC 6 cut(s) 10, 168, 412, 442, 675, 873
Ple19I CGATCG 1 cut(s) 863
PshBI ATTAAT 1 cut(s) 525
PstNI CAGNNNCTG 1 cut(s) 133
PsuI RGATCY 2 cut(s) 20, 902
PvuI CGATCG 1 cut(s) 863
RsaI GTAC 1 cut(s) 564
RsaNI GTAC 1 cut(s) 563
RseI CAYNNNNRTG 2 cut(s) 419, 543
SaqAI TTAA 1 cut(s) 525
SatI GCNGC 6 cut(s) 9, 167, 411, 441, 674, 872
ScrFI CCNGG 1 cut(s) 520
SetI ASST 9 cut(s) 10, 110, 267, 303, 421, 568, 704, 876, 946
SfaNI GCATC 2 cut(s) 126, 132
SfcI CTRYAG 1 cut(s) 654
SmiMI CAYNNNNRTG 2 cut(s) 419, 543
Sse9I AATT 8 cut(s) 146, 225, 247, 391, 526, 589, 599, 613
SsiI CCGC 1 cut(s) 919
SspMI CTAG 4 cut(s) 74, 302, 567, 875
StyD4I CCNGG 1 cut(s) 518
StyI CCWWGG 2 cut(s) 48, 952
TaqI TCGA 4 cut(s) 267, 821, 863, 880
TasI AATT 8 cut(s) 146, 225, 247, 391, 526, 589, 599, 613
Tru1I TTAA 1 cut(s) 525
Tru9I TTAA 1 cut(s) 525
TscAI CASTG 1 cut(s) 845
TseI GCWGC 6 cut(s) 8, 166, 410, 440, 673, 871
TspDTI ATGAA 3 cut(s) 85, 762, 807
TspRI CASTG 1 cut(s) 845
VspI ATTAAT 1 cut(s) 525
XapI RAATTY 1 cut(s) 589
XceI RCATGY 1 cut(s) 347
XmnI GAANNNNTTC 1 cut(s) 258
XspI CTAG 4 cut(s) 74, 302, 567, 875
Zsp2I ATGCAT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.