Rh3CG181700

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0016881
Physical Location & Seq
Forward (+)
15999726 .. 16000703
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG181700.1

Sequence Viewer

Length: 978 bp
ATGGAGGACGTTGCATCCAACTTCCAACCTTCTTCACGGTCCTACTTCACACCCCTTTTGATTTCCATGGCCGGAATAGTCTCCACTACTCTAGCCGTAATAGCATACCATTTCATAGTGACGAAGTTTTGCTTGAGGCATAGGCGTAGGCAGAGACAGAGAATACTAGAAGGATTCTCTAATTTCTCACCGCAACCGAACCCCAACAACAACCAAACTGGGGTAGATGAGAAAGTCCTGAGCTCTATCCCAATTCTCTCTTACTCCACAAAAGACGGACTGACCGGTCTAGATCAGAGCGAGTGTGTGATCTGCTTGGGTGAGCTGGAAGATGGTGACATGGTGAGGCTTCTGCCCAATTGCAAACATCTGTTTCACAATCCATGCATAGACAAATGGTTCTTGGCACATACAAACTGCCCGGTTTGTAGGGCACCTATAGCCGCGCCCATTAAAATTGTGGAGCCTTTGCCTACAGATCAAGAAACCCGAGATCAAGAAGTTCGAGATGAAGCCAGAAGCGTTGAATGTTCTAATTCGAATTCGTCTCCCCAGAGCCATGAGGAGGAAAGGGGACTACTTGGCAATAATGCAACCACTGTTCAATTGCCAAAAAATGGTTTGCTAAGGAATTGTGTGTCCCTCAAGGTGTTGCCTATAGAAGGAAGTAATAAGCAGAAAAGATTTGTGAACGGGTTGGAGAGGTCATTGTCTTTGGATCTGTCACATATCCTCATCAACGTACAGAGAGAATGTGGTGATTATCACAAGCCCTCTTCATCATCATCACCATCTTCTCCTTCTTCTTCTTCTTCTCCCCTGGCGAAAGCGGTTCTTGTAGAGTGTGGATCATTCAGGGAAAGATCTTTAAGACAGTTTGATCGGATGTCTACAGTGTTAATAAGATCACTTTCGCAGTTGCGGGTAGGGCAAAGTAGCAGCACCATGGCTAATGGTCATGAAATTCTTCCTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

325

Amino Acids

35.99

Weight (kDa)

7.98

Isoelectric Point (pI)

69.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 99 - 148 7.4e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 101 - 144 5e-14 Ring finger domain
zf-RING_11 PF17123 101 - 130 4.7e-11 RING-like zinc finger
zf-C3HC4_2 PF13923 101 - 143 2.1e-08 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 101 - 144 9e-07 RING-H2 zinc finger domain
zf-RING_5 PF14634 101 - 144 9.1e-06 zinc-RING finger domain
zf-C3HC4 PF00097 102 - 143 8.5e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016881)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g17171
malus_domestica MD12G1103100.v1.1 MD14G1097100.v1.1
prunus_persica Prupe.7G123200_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0471271
rosa_laevigata RLG00000024192
rosa_multiflora Rmu_ssc0000091.1_g000001
rosa_roxburghii Rroxscaffold_6G00410150
rosa_rugosa Rorug03G0116700
rosa_samantha Rh3AG166000 Rh3BG191400 Rh3CG181700 Rh3DG184300
rosa_wichuraiana Rw3G015620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 285
AccB1I GGYRCC 1 cut(s) 433
AccB7I CCANNNNNTGG 1 cut(s) 617
AccI GTMKAC 1 cut(s) 890
AccII CGCG 1 cut(s) 446
AciI CCGC 4 cut(s) 191, 444, 830, 922
AclWI GGATC 2 cut(s) 726, 856
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 2 cut(s) 541, 963
AfaI GTAC 1 cut(s) 744
AfiI CCNNNNNNNGG 4 cut(s) 220, 565, 617, 662
AgeI ACCGGT 1 cut(s) 284
AgsI TTSAA 2 cut(s) 527, 605
AjnI CCWGG 1 cut(s) 819
AluBI AGCT 2 cut(s) 243, 325
AluI AGCT 2 cut(s) 243, 325
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 3 cut(s) 85, 148, 552
AlwI GGATC 2 cut(s) 726, 856
Ama87I CYCGRG 1 cut(s) 489
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 939
ApoI RAATTY 2 cut(s) 541, 963
AsiGI ACCGGT 1 cut(s) 284
Asp700I GAANNNNTTC 1 cut(s) 966
AspLEI GCGC 1 cut(s) 448
AspS9I GGNCC 1 cut(s) 39
AsuC2I CCSGG 1 cut(s) 422
AsuHPI GGTGA 6 cut(s) 180, 332, 347, 355, 770, 780
AsuII TTCGAA 1 cut(s) 539
AvaI CYCGRG 1 cut(s) 489
AvaII GGWCC 1 cut(s) 39
BaeGI GKGCMC 1 cut(s) 436
BanI GGYRCC 1 cut(s) 433
BanII GRGCYC 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 951
BccI CCATC 2 cut(s) 326, 799
BceAI ACGGC 1 cut(s) 80
BciT130I CCWGG 1 cut(s) 821
BcnI CCSGG 1 cut(s) 422
BcoDI GTCTC 3 cut(s) 85, 148, 552
BfaI CTAG 3 cut(s) 92, 167, 290
BfmI CTRYAG 4 cut(s) 438, 474, 657, 891
BglII AGATCT 1 cut(s) 863
BisI GCNGC 2 cut(s) 444, 940
BlsI GCNGC 2 cut(s) 445, 941
Bme1390I CCNGG 2 cut(s) 422, 821
Bme18I GGWCC 1 cut(s) 39
BmeT110I CYCGRG 1 cut(s) 489
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 2 cut(s) 435, 465
BmrFI CCNGG 2 cut(s) 422, 821
BmrI ACTGGG 1 cut(s) 228
BmsI GCATC 1 cut(s) 23
BmuI ACTGGG 1 cut(s) 228
Bpu10I CCTNAGC 2 cut(s) 239, 626
Bpu14I TTCGAA 1 cut(s) 539
BpuEI CTTGAG 2 cut(s) 154, 629
BpuMI CCSGG 1 cut(s) 422
BsaJI CCNNGG 3 cut(s) 66, 819, 945
BsaWI WCCGGW 1 cut(s) 284
Bsc4I CCNNNNNNNGG 4 cut(s) 220, 565, 617, 662
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 223
BseBI CCWGG 1 cut(s) 821
BseDI CCNNGG 3 cut(s) 66, 819, 945
BseGI GGATG 2 cut(s) 14, 891
BseLI CCNNNNNNNGG 4 cut(s) 220, 565, 617, 662
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 578
BseSI GKGCMC 1 cut(s) 436
BseXI GCAGC 1 cut(s) 951
Bsh1236I CGCG 1 cut(s) 446
BshFI GGCC 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 433
BshTI ACCGGT 1 cut(s) 284
BsiHKAI GWGCWC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 489
BsiSI CCGG 3 cut(s) 72, 285, 422
BslFI GGGAC 2 cut(s) 588, 625
BslI CCNNNNNNNGG 4 cut(s) 220, 565, 617, 662
BsmAI GTCTC 3 cut(s) 85, 148, 552
BsmBI CGTCTC 1 cut(s) 552
BsmFI GGGAC 2 cut(s) 588, 625
BsnI GGCC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 489
Bsp119I TTCGAA 1 cut(s) 539
Bsp1286I GDGCHC 2 cut(s) 245, 436
Bsp143I GATC 9 cut(s) 292, 309, 478, 493, 718, 848, 863, 880, 905
Bsp19I CCATGG 2 cut(s) 66, 945
BspACI CCGC 4 cut(s) 191, 444, 830, 922
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 231
BspFNI CGCG 1 cut(s) 446
BspHI TCATGA 1 cut(s) 958
BspLI GGNNCC 2 cut(s) 435, 465
BspPI GGATC 2 cut(s) 726, 856
BspT104I TTCGAA 1 cut(s) 539
BspT107I GGYRCC 1 cut(s) 433
BsrFI RCCGGY 1 cut(s) 284
BsrI ACTGG 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 3 cut(s) 66, 819, 945
BssMI GATC 9 cut(s) 292, 309, 478, 493, 718, 848, 863, 880, 905
BssT1I CCWWGG 2 cut(s) 66, 945
Bst2UI CCWGG 1 cut(s) 821
Bst4CI ACNGT 4 cut(s) 39, 601, 876, 895
Bst6I CTCTTC 1 cut(s) 781
BstBI TTCGAA 1 cut(s) 539
BstDEI CTNAG 2 cut(s) 239, 626
BstDSI CCRYGG 2 cut(s) 66, 945
BstENI CCTNNNNNAGG 1 cut(s) 660
BstF5I GGATG 2 cut(s) 14, 891
BstFNI CGCG 1 cut(s) 446
BstHHI GCGC 1 cut(s) 448
BstKTI GATC 9 cut(s) 295, 312, 481, 496, 721, 851, 866, 883, 908
BstMAI GTCTC 3 cut(s) 85, 148, 552
BstMBI GATC 9 cut(s) 292, 309, 478, 493, 718, 848, 863, 880, 905
BstMWI GCNNNNNNNGC 3 cut(s) 101, 440, 928
BstNI CCWGG 1 cut(s) 821
BstSCI CCNGG 2 cut(s) 420, 819
BstSFI CTRYAG 4 cut(s) 438, 474, 657, 891
BstSLI GKGCMC 1 cut(s) 436
BstUI CGCG 1 cut(s) 446
BstV1I GCAGC 1 cut(s) 951
BstX2I RGATCY 2 cut(s) 718, 863
BstYI RGATCY 2 cut(s) 718, 863
BsuRI GGCC 1 cut(s) 71
BtgI CCRYGG 2 cut(s) 66, 945
BtsCI GGATG 2 cut(s) 14, 891
BtsIMutI CAGTG 2 cut(s) 597, 900
CciI TCATGA 1 cut(s) 958
CfoI GCGC 1 cut(s) 448
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 743
CspAI ACCGGT 1 cut(s) 284
CviAII CATG 6 cut(s) 67, 340, 384, 560, 946, 959
CviQI GTAC 1 cut(s) 743
DdeI CTNAG 2 cut(s) 239, 626
DpnI GATC 9 cut(s) 294, 311, 480, 495, 720, 850, 865, 882, 907
DpnII GATC 9 cut(s) 292, 309, 478, 493, 718, 848, 863, 880, 905
DrdI GACNNNNNNGTC 1 cut(s) 285
DseDI GACNNNNNNGTC 1 cut(s) 285
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 781
EarI CTCTTC 1 cut(s) 781
Ecl136II GAGCTC 1 cut(s) 243
Eco130I CCWWGG 2 cut(s) 66, 945
Eco24I GRGCYC 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 489
EcoICRI GAGCTC 1 cut(s) 243
EcoNI CCTNNNNNAGG 1 cut(s) 660
EcoRI GAATTC 1 cut(s) 541
EcoRII CCWGG 1 cut(s) 819
EcoT14I CCWWGG 2 cut(s) 66, 945
EcoT22I ATGCAT 1 cut(s) 389
EcoT38I GRGCYC 1 cut(s) 245
ErhI CCWWGG 2 cut(s) 66, 945
Esp3I CGTCTC 1 cut(s) 552
FaeI CATG 6 cut(s) 70, 343, 387, 563, 949, 962
FalI AAGNNNNNCTT 4 cut(s) 116, 148, 819, 851
FaqI GGGAC 2 cut(s) 588, 625
FatI CATG 6 cut(s) 66, 339, 383, 559, 945, 958
FauI CCCGC 1 cut(s) 915
FblI GTMKAC 1 cut(s) 890
Fnu4HI GCNGC 2 cut(s) 444, 940
FokI GGATG 1 cut(s) 898
FriOI GRGCYC 1 cut(s) 245
Fsp4HI GCNGC 2 cut(s) 444, 940
FspBI CTAG 3 cut(s) 92, 167, 290
GlaI GCGC 1 cut(s) 447
GluI GCNGC 2 cut(s) 444, 940
HaeIII GGCC 1 cut(s) 71
HapII CCGG 3 cut(s) 72, 285, 422
HhaI GCGC 1 cut(s) 448
Hin1II CATG 6 cut(s) 70, 343, 387, 563, 949, 962
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HinfI GANTC 1 cut(s) 174
HpaII CCGG 3 cut(s) 72, 285, 422
HphI GGTGA 6 cut(s) 180, 332, 347, 355, 770, 780
Hpy166II GTNNAC 2 cut(s) 691, 891
Hpy188I TCNGA 2 cut(s) 297, 885
Hpy188III TCNNGA 6 cut(s) 238, 290, 482, 497, 506, 959
Hpy8I GTNNAC 2 cut(s) 691, 891
HpyAV CCTTC 4 cut(s) 39, 164, 656, 810
HpyCH4III ACNGT 4 cut(s) 39, 601, 876, 895
HpyCH4IV ACGT 2 cut(s) 9, 741
HpyCH4V TGCA 4 cut(s) 14, 363, 387, 593
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 440, 928
HpyF3I CTNAG 2 cut(s) 239, 626
HpySE526I ACGT 2 cut(s) 9, 741
Hsp92II CATG 6 cut(s) 70, 343, 387, 563, 949, 962
HspAI GCGC 1 cut(s) 446
Kzo9I GATC 9 cut(s) 292, 309, 478, 493, 718, 848, 863, 880, 905
LmnI GCTCC 1 cut(s) 463
Lsp1109I GCAGC 1 cut(s) 951
LweI GCATC 1 cut(s) 23
MaeI CTAG 3 cut(s) 92, 167, 290
MaeII ACGT 2 cut(s) 9, 741
MaeIII GTNAC 3 cut(s) 118, 335, 723
MalI GATC 9 cut(s) 294, 311, 480, 495, 720, 850, 865, 882, 907
MboI GATC 9 cut(s) 292, 309, 478, 493, 718, 848, 863, 880, 905
MboII GAAGA 9 cut(s) 24, 341, 768, 786, 795, 798, 801, 804, 959
MfeI CAATTG 2 cut(s) 358, 605
MflI RGATCY 2 cut(s) 718, 863
MhlI GDGCHC 2 cut(s) 245, 436
MluCI AATT 9 cut(s) 181, 252, 358, 456, 535, 541, 605, 631, 963
MmeI TCCRAC 3 cut(s) 42, 49, 678
MnlI CCTC 8 cut(s) 129, 339, 556, 559, 653, 696, 743, 784
Mph1103I ATGCAT 1 cut(s) 389
MroXI GAANNNNTTC 1 cut(s) 966
MseI TTAA 3 cut(s) 453, 869, 899
MspI CCGG 3 cut(s) 72, 285, 422
MspR9I CCNGG 2 cut(s) 422, 821
MunI CAATTG 2 cut(s) 358, 605
MvaI CCWGG 1 cut(s) 821
MvnI CGCG 1 cut(s) 446
MwoI GCNNNNNNNGC 3 cut(s) 101, 440, 928
NciI CCSGG 1 cut(s) 422
NcoI CCATGG 2 cut(s) 66, 945
NdeII GATC 9 cut(s) 292, 309, 478, 493, 718, 848, 863, 880, 905
NlaIII CATG 6 cut(s) 70, 343, 387, 563, 949, 962
NlaIV GGNNCC 2 cut(s) 435, 465
NmuCI GTSAC 3 cut(s) 118, 335, 723
NsiI ATGCAT 1 cut(s) 389
NspV TTCGAA 1 cut(s) 539
PagI TCATGA 1 cut(s) 958
PdmI GAANNNNTTC 1 cut(s) 966
PfeI GAWTC 1 cut(s) 174
PflMI CCANNNNNTGG 1 cut(s) 617
PinAI ACCGGT 1 cut(s) 284
PkrI GCNGC 2 cut(s) 445, 941
Psp124BI GAGCTC 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 819
PspGI CCWGG 1 cut(s) 819
PspN4I GGNNCC 2 cut(s) 435, 465
PspPI GGNCC 1 cut(s) 39
PsuI RGATCY 2 cut(s) 718, 863
RsaI GTAC 1 cut(s) 744
RsaNI GTAC 1 cut(s) 743
SacI GAGCTC 1 cut(s) 245
SaqAI TTAA 3 cut(s) 453, 869, 899
SatI GCNGC 2 cut(s) 444, 940
Sau3AI GATC 9 cut(s) 292, 309, 478, 493, 718, 848, 863, 880, 905
Sau96I GGNCC 1 cut(s) 39
ScrFI CCNGG 2 cut(s) 422, 821
SduI GDGCHC 2 cut(s) 245, 436
SetI ASST 8 cut(s) 12, 31, 245, 327, 439, 651, 707, 744
SfaNI GCATC 1 cut(s) 23
SfcI CTRYAG 4 cut(s) 438, 474, 657, 891
SfuI TTCGAA 1 cut(s) 539
SinI GGWCC 1 cut(s) 39
SmlI CTYRAG 2 cut(s) 133, 644
SmoI CTYRAG 2 cut(s) 133, 644
Sse9I AATT 9 cut(s) 181, 252, 358, 456, 535, 541, 605, 631, 963
SsiI CCGC 4 cut(s) 191, 444, 830, 922
SspMI CTAG 3 cut(s) 92, 167, 290
SstI GAGCTC 1 cut(s) 245
StyD4I CCNGG 2 cut(s) 420, 819
StyI CCWWGG 2 cut(s) 66, 945
TaaI ACNGT 4 cut(s) 39, 601, 876, 895
TaiI ACGT 2 cut(s) 12, 744
TaqI TCGA 2 cut(s) 505, 539
TasI AATT 9 cut(s) 181, 252, 358, 456, 535, 541, 605, 631, 963
TauI GCSGC 1 cut(s) 446
TfiI GAWTC 1 cut(s) 174
Tru1I TTAA 3 cut(s) 453, 869, 899
Tru9I TTAA 3 cut(s) 453, 869, 899
TscAI CASTG 2 cut(s) 604, 900
TseFI GTSAC 3 cut(s) 118, 335, 723
TseI GCWGC 1 cut(s) 939
Tsp45I GTSAC 3 cut(s) 118, 335, 723
TspDTI ATGAA 4 cut(s) 103, 525, 768, 975
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 2 cut(s) 604, 900
Van91I CCANNNNNTGG 1 cut(s) 617
VpaK11BI GGWCC 1 cut(s) 39
XagI CCTNNNNNAGG 1 cut(s) 660
XapI RAATTY 2 cut(s) 541, 963
XbaI TCTAGA 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 1 cut(s) 457
XmiI GTMKAC 1 cut(s) 890
XmnI GAANNNNTTC 1 cut(s) 966
XspI CTAG 3 cut(s) 92, 167, 290
Zsp2I ATGCAT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.