Rmu_ssc0000091.1_g000001

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000091.1
OG0016881
Physical Location & Seq
Reverse (-)
1486 .. 2466
981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000091.1_g000001.1.cds

Sequence Viewer

Length: 981 bp
atggaggacgttgcatccaacttccaaccttcttcacggtcctacttcacaccccttttgatttccatggccggaatagtctccactactctagccgtaatagcataccatttcatagtgacgaagttttgcttgaggcataggcgtaggcagagacagagaatactagaaggattctctaatttctcaccgcaaccgaaccccaacaacaaccaaactggggtagatgagaaagtcctgagctctatcccaattctctcttactccacaaaagacggactgaccggtctagatcagagcgagtgtgtgatctgcttgggtgagctggaagatggtgacatggtgaggcttctgcccaattgcaaacatctgtttcacaatccatgcatagacaaatggttcttggcacatacaaactgcccggtttgtagggcacctatagccgcgccctttaaaattgtggagcctttgcctacagatcaagaaacccgagatcaagaagttcgagatgaagccagaagcgttgaatgttctaattcgaattcgtctccccatagtcatgaggaggaaaggggactagttggcaataatgcaaccactgttcaattgccaaaaaatggtttgctaaggaattgtgtgtcgctcaaggtgttgcctatagaaggaagtaataagcagaaaagatttgtgaacgggttggagaggtccttgtctttggatctgtcacatatcctcatcaacgtacagagagaatgtggtgattatcacaagccctcttcatcatcatcaccatcttctccttcttcttcttcttcttctcctctggcgaaagcggttcttgtagagtgtggatcattcagggaaagatctttaagacagtttgatcggatgtctacagtgttaataagatcactttcgcagttgcgggtagggcaaagtagcagcaccatggctaatggtcatgaaattcttccttgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

326

Amino Acids

36.11

Weight (kDa)

7.98

Isoelectric Point (pI)

68.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016881)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g17171
malus_domestica MD12G1103100.v1.1 MD14G1097100.v1.1
prunus_persica Prupe.7G123200_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0471271
rosa_laevigata RLG00000024192
rosa_multiflora Rmu_ssc0000091.1_g000001
rosa_roxburghii Rroxscaffold_6G00410150
rosa_rugosa Rorug03G0116700
rosa_samantha Rh3AG166000 Rh3BG191400 Rh3CG181700 Rh3DG184300
rosa_wichuraiana Rw3G015620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 285
AccB1I GGYRCC 1 cut(s) 433
AccB7I CCANNNNNTGG 1 cut(s) 617
AccI GTMKAC 1 cut(s) 893
AccII CGCG 1 cut(s) 446
AciI CCGC 4 cut(s) 191, 444, 833, 925
AclWI GGATC 2 cut(s) 726, 859
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 2 cut(s) 541, 966
AfaI GTAC 1 cut(s) 744
AfiI CCNNNNNNNGG 3 cut(s) 220, 617, 662
AgeI ACCGGT 1 cut(s) 284
AgsI TTSAA 2 cut(s) 527, 605
AhlI ACTAGT 1 cut(s) 577
AluBI AGCT 2 cut(s) 243, 325
AluI AGCT 2 cut(s) 243, 325
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 3 cut(s) 85, 148, 552
AlwI GGATC 2 cut(s) 726, 859
Ama87I CYCGRG 1 cut(s) 489
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 942
ApoI RAATTY 2 cut(s) 541, 966
AsiGI ACCGGT 1 cut(s) 284
Asp700I GAANNNNTTC 1 cut(s) 969
AspLEI GCGC 1 cut(s) 448
AspS9I GGNCC 2 cut(s) 39, 705
AsuC2I CCSGG 1 cut(s) 422
AsuHPI GGTGA 6 cut(s) 180, 332, 347, 355, 770, 780
AsuII TTCGAA 1 cut(s) 539
AvaI CYCGRG 1 cut(s) 489
AvaII GGWCC 2 cut(s) 39, 705
BaeGI GKGCMC 1 cut(s) 436
BanI GGYRCC 1 cut(s) 433
BanII GRGCYC 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 954
BccI CCATC 2 cut(s) 326, 799
BceAI ACGGC 1 cut(s) 80
BcnI CCSGG 1 cut(s) 422
BcoDI GTCTC 3 cut(s) 85, 148, 552
BcuI ACTAGT 1 cut(s) 577
BfaI CTAG 4 cut(s) 92, 167, 290, 578
BfmI CTRYAG 4 cut(s) 438, 474, 657, 894
BglII AGATCT 1 cut(s) 866
BisI GCNGC 2 cut(s) 444, 943
BlsI GCNGC 2 cut(s) 445, 944
Bme1390I CCNGG 1 cut(s) 422
Bme18I GGWCC 2 cut(s) 39, 705
BmeT110I CYCGRG 1 cut(s) 489
BmgT120I GGNCC 2 cut(s) 39, 705
BmiI GGNNCC 2 cut(s) 435, 465
BmrFI CCNGG 1 cut(s) 422
BmrI ACTGGG 1 cut(s) 228
BmsI GCATC 1 cut(s) 23
BmuI ACTGGG 1 cut(s) 228
Bpu10I CCTNAGC 2 cut(s) 239, 626
Bpu14I TTCGAA 1 cut(s) 539
BpuEI CTTGAG 2 cut(s) 154, 629
BpuMI CCSGG 1 cut(s) 422
BsaJI CCNNGG 2 cut(s) 66, 948
BsaWI WCCGGW 1 cut(s) 284
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 617, 662
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 223
BseDI CCNNGG 2 cut(s) 66, 948
BseGI GGATG 2 cut(s) 14, 894
BseLI CCNNNNNNNGG 3 cut(s) 220, 617, 662
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 2 cut(s) 578, 810
BseSI GKGCMC 1 cut(s) 436
BseXI GCAGC 1 cut(s) 954
Bsh1236I CGCG 1 cut(s) 446
BshFI GGCC 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 433
BshTI ACCGGT 1 cut(s) 284
BsiHKAI GWGCWC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 489
BsiSI CCGG 3 cut(s) 72, 285, 422
BslFI GGGAC 1 cut(s) 588
BslI CCNNNNNNNGG 3 cut(s) 220, 617, 662
BsmAI GTCTC 3 cut(s) 85, 148, 552
BsmBI CGTCTC 1 cut(s) 552
BsmFI GGGAC 1 cut(s) 588
BsnI GGCC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 489
Bsp119I TTCGAA 1 cut(s) 539
Bsp1286I GDGCHC 2 cut(s) 245, 436
Bsp143I GATC 9 cut(s) 292, 309, 478, 493, 718, 851, 866, 883, 908
Bsp19I CCATGG 2 cut(s) 66, 948
BspACI CCGC 4 cut(s) 191, 444, 833, 925
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 231
BspFNI CGCG 1 cut(s) 446
BspHI TCATGA 2 cut(s) 559, 961
BspLI GGNNCC 2 cut(s) 435, 465
BspPI GGATC 2 cut(s) 726, 859
BspT104I TTCGAA 1 cut(s) 539
BspT107I GGYRCC 1 cut(s) 433
BsrFI RCCGGY 1 cut(s) 284
BsrI ACTGG 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 2 cut(s) 66, 948
BssMI GATC 9 cut(s) 292, 309, 478, 493, 718, 851, 866, 883, 908
BssT1I CCWWGG 2 cut(s) 66, 948
Bst4CI ACNGT 4 cut(s) 39, 601, 879, 898
Bst6I CTCTTC 1 cut(s) 781
BstBI TTCGAA 1 cut(s) 539
BstDEI CTNAG 2 cut(s) 239, 626
BstDSI CCRYGG 2 cut(s) 66, 948
BstENI CCTNNNNNAGG 1 cut(s) 660
BstF5I GGATG 2 cut(s) 14, 894
BstFNI CGCG 1 cut(s) 446
BstHHI GCGC 1 cut(s) 448
BstKTI GATC 9 cut(s) 295, 312, 481, 496, 721, 854, 869, 886, 911
BstMAI GTCTC 3 cut(s) 85, 148, 552
BstMBI GATC 9 cut(s) 292, 309, 478, 493, 718, 851, 866, 883, 908
BstMWI GCNNNNNNNGC 3 cut(s) 101, 440, 931
BstSCI CCNGG 1 cut(s) 420
BstSFI CTRYAG 4 cut(s) 438, 474, 657, 894
BstSLI GKGCMC 1 cut(s) 436
BstUI CGCG 1 cut(s) 446
BstV1I GCAGC 1 cut(s) 954
BstX2I RGATCY 2 cut(s) 718, 866
BstYI RGATCY 2 cut(s) 718, 866
BsuRI GGCC 1 cut(s) 71
BtgI CCRYGG 2 cut(s) 66, 948
BtsCI GGATG 2 cut(s) 14, 894
BtsIMutI CAGTG 2 cut(s) 597, 903
CciI TCATGA 2 cut(s) 559, 961
CfoI GCGC 1 cut(s) 448
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 2 cut(s) 39, 705
Csp6I GTAC 1 cut(s) 743
CspAI ACCGGT 1 cut(s) 284
CviAII CATG 6 cut(s) 67, 340, 384, 560, 949, 962
CviQI GTAC 1 cut(s) 743
DdeI CTNAG 2 cut(s) 239, 626
DpnI GATC 9 cut(s) 294, 311, 480, 495, 720, 853, 868, 885, 910
DpnII GATC 9 cut(s) 292, 309, 478, 493, 718, 851, 866, 883, 908
DraI TTTAAA 1 cut(s) 454
DrdI GACNNNNNNGTC 1 cut(s) 285
DseDI GACNNNNNNGTC 1 cut(s) 285
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 781
EarI CTCTTC 1 cut(s) 781
Ecl136II GAGCTC 1 cut(s) 243
Eco130I CCWWGG 2 cut(s) 66, 948
Eco24I GRGCYC 1 cut(s) 245
Eco47I GGWCC 2 cut(s) 39, 705
Eco53kI GAGCTC 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 489
EcoICRI GAGCTC 1 cut(s) 243
EcoNI CCTNNNNNAGG 1 cut(s) 660
EcoO109I RGGNCCY 1 cut(s) 705
EcoRI GAATTC 1 cut(s) 541
EcoT14I CCWWGG 2 cut(s) 66, 948
EcoT22I ATGCAT 1 cut(s) 389
EcoT38I GRGCYC 1 cut(s) 245
ErhI CCWWGG 2 cut(s) 66, 948
Esp3I CGTCTC 1 cut(s) 552
FaeI CATG 6 cut(s) 70, 343, 387, 563, 952, 965
FalI AAGNNNNNCTT 4 cut(s) 116, 148, 822, 854
FaqI GGGAC 1 cut(s) 588
FatI CATG 6 cut(s) 66, 339, 383, 559, 948, 961
FauI CCCGC 1 cut(s) 918
FblI GTMKAC 1 cut(s) 893
Fnu4HI GCNGC 2 cut(s) 444, 943
FokI GGATG 1 cut(s) 901
FriOI GRGCYC 1 cut(s) 245
Fsp4HI GCNGC 2 cut(s) 444, 943
FspBI CTAG 4 cut(s) 92, 167, 290, 578
GlaI GCGC 1 cut(s) 447
GluI GCNGC 2 cut(s) 444, 943
HaeIII GGCC 1 cut(s) 71
HapII CCGG 3 cut(s) 72, 285, 422
HhaI GCGC 1 cut(s) 448
Hin1II CATG 6 cut(s) 70, 343, 387, 563, 952, 965
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HinfI GANTC 1 cut(s) 174
HpaII CCGG 3 cut(s) 72, 285, 422
HphI GGTGA 6 cut(s) 180, 332, 347, 355, 770, 780
Hpy166II GTNNAC 2 cut(s) 691, 894
Hpy188I TCNGA 2 cut(s) 297, 888
Hpy188III TCNNGA 7 cut(s) 238, 290, 482, 497, 506, 560, 962
Hpy8I GTNNAC 2 cut(s) 691, 894
HpyAV CCTTC 4 cut(s) 39, 164, 656, 810
HpyCH4III ACNGT 4 cut(s) 39, 601, 879, 898
HpyCH4IV ACGT 2 cut(s) 9, 741
HpyCH4V TGCA 4 cut(s) 14, 363, 387, 593
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 440, 931
HpyF3I CTNAG 2 cut(s) 239, 626
HpySE526I ACGT 2 cut(s) 9, 741
Hsp92II CATG 6 cut(s) 70, 343, 387, 563, 952, 965
HspAI GCGC 1 cut(s) 446
Kzo9I GATC 9 cut(s) 292, 309, 478, 493, 718, 851, 866, 883, 908
LmnI GCTCC 1 cut(s) 463
LpnPI CCDG 9 cut(s) 85, 204, 251, 298, 311, 435, 529, 809, 844
Lsp1109I GCAGC 1 cut(s) 954
LweI GCATC 1 cut(s) 23
MaeI CTAG 4 cut(s) 92, 167, 290, 578
MaeII ACGT 2 cut(s) 9, 741
MaeIII GTNAC 3 cut(s) 118, 335, 723
MalI GATC 9 cut(s) 294, 311, 480, 495, 720, 853, 868, 885, 910
MboI GATC 9 cut(s) 292, 309, 478, 493, 718, 851, 866, 883, 908
MfeI CAATTG 2 cut(s) 358, 605
MflI RGATCY 2 cut(s) 718, 866
MhlI GDGCHC 2 cut(s) 245, 436
MluCI AATT 9 cut(s) 181, 252, 358, 456, 535, 541, 605, 631, 966
MmeI TCCRAC 3 cut(s) 42, 49, 678
MnlI CCTC 8 cut(s) 129, 339, 556, 559, 696, 743, 784, 831
Mph1103I ATGCAT 1 cut(s) 389
MroXI GAANNNNTTC 1 cut(s) 969
MseI TTAA 3 cut(s) 453, 872, 902
MslI CAYNNNNRTG 1 cut(s) 558
MspI CCGG 3 cut(s) 72, 285, 422
MspR9I CCNGG 1 cut(s) 422
MunI CAATTG 2 cut(s) 358, 605
MvnI CGCG 1 cut(s) 446
MwoI GCNNNNNNNGC 3 cut(s) 101, 440, 931
NciI CCSGG 1 cut(s) 422
NcoI CCATGG 2 cut(s) 66, 948
NdeII GATC 9 cut(s) 292, 309, 478, 493, 718, 851, 866, 883, 908
NlaIII CATG 6 cut(s) 70, 343, 387, 563, 952, 965
NlaIV GGNNCC 2 cut(s) 435, 465
NmuCI GTSAC 3 cut(s) 118, 335, 723
NsiI ATGCAT 1 cut(s) 389
NspV TTCGAA 1 cut(s) 539
PagI TCATGA 2 cut(s) 559, 961
PdmI GAANNNNTTC 1 cut(s) 969
PfeI GAWTC 1 cut(s) 174
PflMI CCANNNNNTGG 1 cut(s) 617
PinAI ACCGGT 1 cut(s) 284
PkrI GCNGC 2 cut(s) 445, 944
PpuMI RGGWCCY 1 cut(s) 705
Psp124BI GAGCTC 1 cut(s) 245
Psp5II RGGWCCY 1 cut(s) 705
PspN4I GGNNCC 2 cut(s) 435, 465
PspPI GGNCC 2 cut(s) 39, 705
PspPPI RGGWCCY 1 cut(s) 705
PsuI RGATCY 2 cut(s) 718, 866
RsaI GTAC 1 cut(s) 744
RsaNI GTAC 1 cut(s) 743
RseI CAYNNNNRTG 1 cut(s) 558
SacI GAGCTC 1 cut(s) 245
SaqAI TTAA 3 cut(s) 453, 872, 902
SatI GCNGC 2 cut(s) 444, 943
Sau3AI GATC 9 cut(s) 292, 309, 478, 493, 718, 851, 866, 883, 908
Sau96I GGNCC 2 cut(s) 39, 705
ScrFI CCNGG 1 cut(s) 422
SduI GDGCHC 2 cut(s) 245, 436
SetI ASST 8 cut(s) 12, 31, 245, 327, 439, 651, 707, 744
SfaNI GCATC 1 cut(s) 23
SfcI CTRYAG 4 cut(s) 438, 474, 657, 894
SfuI TTCGAA 1 cut(s) 539
SinI GGWCC 2 cut(s) 39, 705
SmiMI CAYNNNNRTG 1 cut(s) 558
SmlI CTYRAG 2 cut(s) 133, 644
SmoI CTYRAG 2 cut(s) 133, 644
SpeI ACTAGT 1 cut(s) 577
Sse9I AATT 9 cut(s) 181, 252, 358, 456, 535, 541, 605, 631, 966
SsiI CCGC 4 cut(s) 191, 444, 833, 925
SspMI CTAG 4 cut(s) 92, 167, 290, 578
SstI GAGCTC 1 cut(s) 245
StyD4I CCNGG 1 cut(s) 420
StyI CCWWGG 2 cut(s) 66, 948
TaaI ACNGT 4 cut(s) 39, 601, 879, 898
TaiI ACGT 2 cut(s) 12, 744
TaqI TCGA 2 cut(s) 505, 539
TasI AATT 9 cut(s) 181, 252, 358, 456, 535, 541, 605, 631, 966
TauI GCSGC 1 cut(s) 446
TfiI GAWTC 1 cut(s) 174
Tru1I TTAA 3 cut(s) 453, 872, 902
Tru9I TTAA 3 cut(s) 453, 872, 902
TscAI CASTG 2 cut(s) 604, 903
TseFI GTSAC 3 cut(s) 118, 335, 723
TseI GCWGC 1 cut(s) 942
Tsp45I GTSAC 3 cut(s) 118, 335, 723
TspDTI ATGAA 4 cut(s) 103, 525, 768, 978
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 2 cut(s) 604, 903
Van91I CCANNNNNTGG 1 cut(s) 617
VpaK11BI GGWCC 2 cut(s) 39, 705
XagI CCTNNNNNAGG 1 cut(s) 660
XapI RAATTY 2 cut(s) 541, 966
XbaI TCTAGA 1 cut(s) 289
XmiI GTMKAC 1 cut(s) 893
XmnI GAANNNNTTC 1 cut(s) 969
XspI CTAG 4 cut(s) 92, 167, 290, 578
Zsp2I ATGCAT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.