Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0013400

Physical Location & Seq

Genomic Coordinates Forward (+)

15206597 .. 15208484

Gene Structure 1888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G133900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCAAGCCTTTACAGAGGGGTCTCTAGGAAAGAAAAACCCAGAGGGAGACATCATGGGTTACCTACACAAAAGAAACAAGAGATCAAGGAAGCGTTCGAGTTATTCGACACCGATGGCTCAGGCACCATTGATGCCAAGGAGCTCAATGTTGCCATGAGGGCTCTCGGTTTCGAGATGACAGAAGAGCAAATCACTCAAATGATTGCAGATGTTGACAAGGATGGCAGTGGTGCTATTGACTTTGATGAATTTGTGCACATGATGACAGCCAAAATTGGGGAACGGGACACAAAGGAGGAACTCATGAAAGCCTTCCATCTCATCGACCAAGATAACAATGGTAAGATATCTGCTGCTGACATTAAAAATATTGCAAAGGATCTGGGGGAGAACTTAAGTGATAGAGAGATCCAAGAGATGATTGAGGAAGCAGACCGAGATCGTGATGGAGAAGTTAATGCTGAGGAGTTCATCAGGATGATGAAGAGAACAGCATATGGGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0010118 GO:0016020 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0097305 GO:0097306 GO:1901527 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

170

Amino Acids

19.22

Weight (kDa)

4.84

Isoelectric Point (pI)

21.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50360 AT4G37010 AT4G37010
fragaria_vesca	FvH4_1g15980
malus_domestica	MD02G1171500.v1.1 MD15G1283300.v1.1
prunus_persica	Prupe.7G133900_v2.0.a1 Prupe.7G133900_v2.0.a1
pyrus_communis	pycom02g13820 pycom15g24650
rosa_chinensis	RchiOBHm_Chr2g0105581
rosa_laevigata	RLG00000017438
rosa_rugosa	Rorug02G0128400
rosa_samantha	Rh2AG180000 Rh2BG189100 Rh2CG184300 Rh2DG185800
rosa_wichuraiana	Rw2G014080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AclWI	GGATC	2 cut(s)	390, 406
AcsI	RAATTY	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	279
AflII	CTTAAG	1 cut(s)	397
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
Alw21I	GWGCWC	2 cut(s)	147, 261
Alw26I	GTCTC	2 cut(s)	28, 43
Alw44I	GTGCAC	1 cut(s)	257
AlwI	GGATC	2 cut(s)	390, 406
ApaLI	GTGCAC	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	1 cut(s)	251
Asp700I	GAANNNNTTC	1 cut(s)	314
BaeGI	GKGCMC	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	2 cut(s)	147, 166
Bbv12I	GWGCWC	2 cut(s)	147, 261
BbvCI	CCTCAGC	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	4 cut(s)	110, 218, 327, 443
BcoDI	GTCTC	2 cut(s)	28, 43
BfaI	CTAG	1 cut(s)	27
BfrI	CTTAAG	1 cut(s)	397
BglI	GCCNNNNNGGC	1 cut(s)	161
BisI	GCNGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	358
BmiI	GGNNCC	1 cut(s)	127
BmsI	GCATC	1 cut(s)	124
Bpu10I	CCTNAGC	2 cut(s)	121, 465
BsaI	GGTCTC	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	2 cut(s)	229, 486
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseMII	CTCAG	2 cut(s)	135, 456
BseRI	GAGGAG	1 cut(s)	482
BseSI	GKGCMC	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	343
BshNI	GGYRCC	1 cut(s)	125
BsiHKAI	GWGCWC	2 cut(s)	147, 261
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	279
BsmAI	GTCTC	2 cut(s)	28, 43
BsmFI	GGGAC	1 cut(s)	302
Bso31I	GGTCTC	1 cut(s)	28
Bsp1286I	GDGCHC	3 cut(s)	147, 166, 261
Bsp143I	GATC	4 cut(s)	84, 382, 411, 442
BspCNI	CTCAG	2 cut(s)	134, 457
BspHI	TCATGA	1 cut(s)	306
BspLI	GGNNCC	1 cut(s)	127
BspPI	GGATC	2 cut(s)	390, 406
BspQI	GCTCTTC	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	125
BspTI	CTTAAG	1 cut(s)	397
BspTNI	GGTCTC	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	4 cut(s)	84, 382, 411, 442
BssT1I	CCWWGG	1 cut(s)	138
Bst6I	CTCTTC	2 cut(s)	180, 482
BstAFI	CTTAAG	1 cut(s)	397
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	121, 465
BstEII	GGTNACC	1 cut(s)	60
BstF5I	GGATG	2 cut(s)	229, 486
BstKTI	GATC	4 cut(s)	87, 385, 414, 445
BstMAI	GTCTC	2 cut(s)	28, 43
BstMBI	GATC	4 cut(s)	84, 382, 411, 442
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstPI	GGTNACC	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	343
BstX2I	RGATCY	2 cut(s)	382, 411
BstYI	RGATCY	2 cut(s)	382, 411
BtsCI	GGATG	2 cut(s)	229, 486
BtsI	GCAGTG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	7
CciI	TCATGA	1 cut(s)	306
CviAII	CATG	4 cut(s)	56, 157, 262, 307
CviJI	RGCY	6 cut(s)	9, 120, 145, 164, 272, 314
CviKI_1	RGCY	6 cut(s)	9, 120, 145, 164, 272, 314
DdeI	CTNAG	2 cut(s)	121, 465
DpnI	GATC	4 cut(s)	86, 384, 413, 444
DpnII	GATC	4 cut(s)	84, 382, 411, 442
Eam1104I	CTCTTC	2 cut(s)	180, 482
EarI	CTCTTC	2 cut(s)	180, 482
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	138
Eco24I	GRGCYC	2 cut(s)	147, 166
Eco31I	GGTCTC	1 cut(s)	28
Eco32I	GATATC	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	145
Eco91I	GGTNACC	1 cut(s)	60
EcoICRI	GAGCTC	1 cut(s)	145
EcoO65I	GGTNACC	1 cut(s)	60
EcoRV	GATATC	1 cut(s)	351
EcoT14I	CCWWGG	1 cut(s)	138
EcoT38I	GRGCYC	2 cut(s)	147, 166
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	4 cut(s)	59, 160, 265, 310
FaiI	YATR	6 cut(s)	57, 158, 263, 308, 499, 501
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	4 cut(s)	55, 156, 261, 306
FauNDI	CATATG	1 cut(s)	499
Fnu4HI	GCNGC	1 cut(s)	357
FokI	GGATG	2 cut(s)	236, 493
FriOI	GRGCYC	2 cut(s)	147, 166
Fsp4HI	GCNGC	1 cut(s)	357
FspBI	CTAG	1 cut(s)	27
GluI	GCNGC	1 cut(s)	357
Hin1II	CATG	4 cut(s)	59, 160, 265, 310
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
Hpy166II	GTNNAC	2 cut(s)	217, 259
Hpy188III	TCNNGA	4 cut(s)	175, 307, 446, 478
Hpy8I	GTNNAC	2 cut(s)	217, 259
HpyAV	CCTTC	1 cut(s)	325
HpyCH4V	TGCA	3 cut(s)	209, 259, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	2 cut(s)	121, 465
Hsp92II	CATG	4 cut(s)	59, 160, 265, 310
Kzo9I	GATC	4 cut(s)	84, 382, 411, 442
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	4 cut(s)	55, 108, 371, 463
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	60
MalI	GATC	4 cut(s)	86, 384, 413, 444
MboI	GATC	4 cut(s)	84, 382, 411, 442
MboII	GAAGA	2 cut(s)	197, 499
MflI	RGATCY	2 cut(s)	382, 411
MhlI	GDGCHC	3 cut(s)	147, 166, 261
MluCI	AATT	2 cut(s)	251, 276
MnlI	CCTC	6 cut(s)	11, 38, 153, 292, 421, 460
MroXI	GAANNNNTTC	1 cut(s)	314
MseI	TTAA	3 cut(s)	366, 398, 459
MslI	CAYNNNNRTG	2 cut(s)	200, 479
MspCI	CTTAAG	1 cut(s)	397
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeI	CATATG	1 cut(s)	499
NdeII	GATC	4 cut(s)	84, 382, 411, 442
NlaIII	CATG	4 cut(s)	59, 160, 265, 310
NlaIV	GGNNCC	1 cut(s)	127
PagI	TCATGA	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	358
Psp124BI	GAGCTC	1 cut(s)	147
PspEI	GGTNACC	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	127
PsuI	RGATCY	2 cut(s)	382, 411
RseI	CAYNNNNRTG	2 cut(s)	200, 479
SacI	GAGCTC	1 cut(s)	147
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	366, 398, 459
SatI	GCNGC	1 cut(s)	357
Sau3AI	GATC	4 cut(s)	84, 382, 411, 442
SduI	GDGCHC	3 cut(s)	147, 166, 261
SetI	ASST	2 cut(s)	67, 147
SfaNI	GCATC	1 cut(s)	124
SmiMI	CAYNNNNRTG	2 cut(s)	200, 479
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
Sse9I	AATT	2 cut(s)	251, 276
SspI	AATATT	1 cut(s)	373
SspMI	CTAG	1 cut(s)	27
SstI	GAGCTC	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	138
TaqI	TCGA	4 cut(s)	99, 108, 174, 327
TaqII	GACCGA	1 cut(s)	453
TasI	AATT	2 cut(s)	251, 276
Tru1I	TTAA	3 cut(s)	366, 398, 459
Tru9I	TTAA	3 cut(s)	366, 398, 459
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	1 cut(s)	356
TspDTI	ATGAA	4 cut(s)	264, 323, 463, 500
TspRI	CASTG	1 cut(s)	235
Vha464I	CTTAAG	1 cut(s)	397
VneI	GTGCAC	1 cut(s)	257
XapI	RAATTY	1 cut(s)	251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	314
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.