pycom15g24650

calcium-binding protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
18874502 .. 18875367
866 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g24650.3

Sequence Viewer

Length: 207 bp
ATGAGGGCTCTCGGTTTTGAGATGACCGAAGAGCAAATTAATCAAATGATTGCAGATGTTGACAAGGATGGAAGTGGTGCTATCGACTTTGATGAGTTTGCACACATGATGACAGCCAAAATTGGAGAACGGGACACAAAGGAGGAACTCATGAAAGCATTCCAGCTCATCGACCTAGATCGCAATGTATTCTGCTGCAGACATTAA

Protein Analysis

69

Amino Acids

7.86

Weight (kDa)

4.55

Isoelectric Point (pI)

14.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013400)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 195
AseI ATTAAT 1 cut(s) 39
Asp700I GAANNNNTTC 1 cut(s) 158
BanII GRGCYC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 182
BccI CCATC 1 cut(s) 62
BfaI CTAG 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 196
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 190
BseGI GGATG 1 cut(s) 73
BseMI GCAATG 1 cut(s) 190
BseXI GCAGC 1 cut(s) 182
BslFI GGGAC 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 146
BsmI GAATGC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 10
Bsp143I GATC 1 cut(s) 178
BspHI TCATGA 1 cut(s) 150
BspMAI CTGCAG 1 cut(s) 200
BspQI GCTCTTC 1 cut(s) 24
BsrDI GCAATG 1 cut(s) 190
BssMI GATC 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 24
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 1 cut(s) 181
BstMBI GATC 1 cut(s) 178
BstSFI CTRYAG 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 182
BtsCI GGATG 1 cut(s) 73
CciI TCATGA 1 cut(s) 150
CviAII CATG 2 cut(s) 106, 151
CviJI RGCY 3 cut(s) 8, 116, 166
CviKI_1 RGCY 3 cut(s) 8, 116, 166
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco24I GRGCYC 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 10
FaeI CATG 2 cut(s) 109, 154
FaiI YATR 2 cut(s) 107, 152
FaqI GGGAC 1 cut(s) 146
FatI CATG 2 cut(s) 105, 150
Fnu4HI GCNGC 1 cut(s) 196
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 10
Fsp4HI GCNGC 1 cut(s) 196
FspBI CTAG 1 cut(s) 176
GluI GCNGC 1 cut(s) 196
Hin1II CATG 2 cut(s) 109, 154
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 61
Hpy188III TCNNGA 1 cut(s) 151
Hpy8I GTNNAC 1 cut(s) 61
HpyCH4V TGCA 3 cut(s) 53, 101, 198
Hsp92II CATG 2 cut(s) 109, 154
Kzo9I GATC 1 cut(s) 178
LguI GCTCTTC 1 cut(s) 24
LpnPI CCDG 1 cut(s) 176
Lsp1109I GCAGC 1 cut(s) 182
MaeI CTAG 1 cut(s) 176
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 1 cut(s) 41
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 2 cut(s) 36, 120
MnlI CCTC 1 cut(s) 136
MroXI GAANNNNTTC 1 cut(s) 158
MseI TTAA 2 cut(s) 39, 205
Mva1269I GAATGC 1 cut(s) 158
NdeII GATC 1 cut(s) 178
NlaIII CATG 2 cut(s) 109, 154
PagI TCATGA 1 cut(s) 150
PciSI GCTCTTC 1 cut(s) 24
PctI GAATGC 1 cut(s) 158
PdmI GAANNNNTTC 1 cut(s) 158
PkrI GCNGC 1 cut(s) 197
PshBI ATTAAT 1 cut(s) 39
PstI CTGCAG 1 cut(s) 200
SapI GCTCTTC 1 cut(s) 24
SaqAI TTAA 2 cut(s) 39, 205
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 1 cut(s) 178
SduI GDGCHC 1 cut(s) 10
SetI ASST 2 cut(s) 168, 177
SfcI CTRYAG 1 cut(s) 196
SgeI CNNG 7 cut(s) 23, 76, 118, 143, 163, 175, 188
Sse9I AATT 2 cut(s) 36, 120
SspMI CTAG 1 cut(s) 176
TaqI TCGA 2 cut(s) 84, 171
TaqII GACCGA 1 cut(s) 41
TasI AATT 2 cut(s) 36, 120
Tru1I TTAA 2 cut(s) 39, 205
Tru9I TTAA 2 cut(s) 39, 205
TseI GCWGC 1 cut(s) 195
TspDTI ATGAA 1 cut(s) 167
VspI ATTAAT 1 cut(s) 39
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.