Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002224

Physical Location & Seq

Genomic Coordinates Forward (+)

11070902 .. 11074418

Gene Structure 3517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0128400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCGAACACTTTGTGACGCTTGTGAAAGCGCAGCCGCGATCGTTTTCTGTGCTGCCGACGAAGCTGCTCTTTGCCGTGCCTGTGATGAAAAAGTGCATTTGTGCAATAAGCTTGCTAGCCGACATGTTCGGGTTGGTCTGGCAACTCCCAGTGCAGTTCCCCGCTGTGATATTTGTGAAAATGCACCCGATGGGAGTTCCCTTTGTTTGCAATGTGATATGGTTGTTCATGTTGGAGGTAAAAGAACACACGGAAGATATCTGGTACTGAGACAAAGAGTTGAGTTTCCAGGGGATAAACCTAGTAGTAACGGTGAAGACCCAGCATCCCAGCCCCCCATTGACCAAGGTGAGACCAGAAGAGTACAACATCAGCAACCAAGAATGACAATTGGAGAGAACCATCAAAATCACAGGGCATCTCCTATTCGTCTAGCAGATGCCAATGATGATGGGCATGTAAAGATGGATAATAAGTTAATTGATTTGAACATGAAGCCTAATCGGATGCATGGACAAGCTTCAAATAAAGAGGACCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0010118 GO:0016020 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0097305 GO:0097306 GO:1901527 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

180

Amino Acids

19.79

Weight (kDa)

6.74

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19270 AT3G19270
fragaria_vesca	FvH4_2g06010 FvH4_2g34420
malus_domestica	MD02G1171600.v1.1 MD05G1081400.v1.1 MD08G1101400.v1.1 MD15G1082600.v1.1 MD15G1283400.v1.1
prunus_persica	Prupe.1G435300_v2.0.a1 Prupe.7G133800_v2.0.a1 Prupe.8G125800_v2.0.a1
pyrus_communis	pycom02g13830 pycom05g07510 pycom08g08190 pycom15g07740
rosa_chinensis	RchiOBHm_Chr2g0105591 RchiOBHm_Chr6g0257401 RchiOBHm_Chr6g0307951
rosa_laevigata	RLG00000010684 RLG00000014690 RLG00000017443
rosa_multiflora	Rmu_sc0000820.1_g000025 Rmu_sc0003252.1_g000022
rosa_roxburghii	Rroxscaffold_2G00138090 Rroxscaffold_7G00160740 Rroxscaffold_7G00208630
rosa_rugosa	Rorug02G0128400 Rorug02G0128500 Rorug05G0573200 Rorug06G0362000
rosa_samantha	Rh2AG180300 Rh2CG184500 Rh2DG186100 Rh6AG090500 Rh6AG471000 Rh6BG482000 Rh6CG078300 Rh6CG487400 Rh6DG074100 Rh6DG473500
rosa_wichuraiana	Rw6G007900 Rw6G041130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	38
AciI	CCGC	2 cut(s)	36, 163
AdeI	CACNNNGTG	1 cut(s)	14
AfaI	GTAC	2 cut(s)	267, 366
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	2 cut(s)	490, 525
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	3 cut(s)	65, 112, 521
AluI	AGCT	3 cut(s)	65, 112, 521
Alw26I	GTCTC	2 cut(s)	265, 347
ApeKI	GCWGC	3 cut(s)	32, 53, 65
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	535
AsuHPI	GGTGA	2 cut(s)	326, 362
AsuNHI	GCTAGC	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	535
BbsI	GAAGAC	1 cut(s)	324
BbvI	GCAGC	3 cut(s)	40, 44, 52
BccI	CCATC	4 cut(s)	185, 411, 446, 460
BceAI	ACGGC	1 cut(s)	60
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BciT130I	CCWGG	1 cut(s)	291
BcoDI	GTCTC	2 cut(s)	265, 347
BfaI	CTAG	3 cut(s)	117, 303, 434
BisI	GCNGC	4 cut(s)	33, 36, 54, 66
BlsI	GCNGC	4 cut(s)	34, 37, 55, 67
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	535
BmgT120I	GGNCC	1 cut(s)	535
BmrFI	CCNGG	1 cut(s)	291
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	4 cut(s)	335, 428, 430, 498
BmtI	GCTAGC	1 cut(s)	120
BmuI	ACTGGG	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	324
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	290, 346
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	290, 346
BseGI	GGATG	2 cut(s)	326, 513
BseMI	GCAATG	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	1 cut(s)	150
BseXI	GCAGC	3 cut(s)	40, 44, 52
BseYI	CCCAGC	2 cut(s)	322, 330
BsgI	GTGCAG	1 cut(s)	174
Bsh1236I	CGCG	1 cut(s)	38
Bsh1285I	CGRYCG	1 cut(s)	42
BsiEI	CGRYCG	1 cut(s)	42
BsmAI	GTCTC	2 cut(s)	265, 347
Bso31I	GGTCTC	1 cut(s)	347
Bsp143I	GATC	1 cut(s)	39
BspACI	CCGC	2 cut(s)	36, 163
BspCNI	CTCAG	1 cut(s)	261
BspFNI	CGCG	1 cut(s)	38
BspOI	GCTAGC	1 cut(s)	120
BspTNI	GGTCTC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	290, 346
BssMI	GATC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	346
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	1 cut(s)	355
BstC8I	GCNNGC	2 cut(s)	114, 118
BstDEI	CTNAG	1 cut(s)	269
BstF5I	GGATG	2 cut(s)	326, 513
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	2 cut(s)	265, 347
BstMBI	GATC	1 cut(s)	39
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	2 cut(s)	128, 461
BstSCI	CCNGG	1 cut(s)	289
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	3 cut(s)	40, 44, 52
BstV2I	GAAGAC	1 cut(s)	324
BtsCI	GGATG	2 cut(s)	326, 513
BtsIMutI	CAGTG	1 cut(s)	157
Cac8I	GCNNGC	2 cut(s)	114, 118
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	535
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	2 cut(s)	266, 365
CviAII	CATG	5 cut(s)	125, 230, 458, 493, 512
CviJI	RGCY	7 cut(s)	35, 65, 112, 120, 334, 499, 521
CviKI_1	RGCY	7 cut(s)	35, 65, 112, 120, 334, 499, 521
CviQI	GTAC	2 cut(s)	266, 365
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
DraIII	CACNNNGTG	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	355
EarI	CTCTTC	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	346
Eco31I	GGTCTC	1 cut(s)	347
Eco32I	GATATC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	346
EcoT22I	ATGCAT	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	346
FaeI	CATG	5 cut(s)	128, 233, 461, 496, 515
FaiI	YATR	6 cut(s)	126, 221, 231, 459, 494, 513
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FatI	CATG	5 cut(s)	124, 229, 457, 492, 511
FauI	CCCGC	1 cut(s)	170
Fnu4HI	GCNGC	4 cut(s)	33, 36, 54, 66
FokI	GGATG	2 cut(s)	313, 520
Fsp4HI	GCNGC	4 cut(s)	33, 36, 54, 66
FspBI	CTAG	3 cut(s)	117, 303, 434
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	4 cut(s)	33, 36, 54, 66
GsaI	CCCAGC	2 cut(s)	326, 334
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	5 cut(s)	128, 233, 461, 496, 515
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HindIII	AAGCTT	2 cut(s)	110, 519
HphI	GGTGA	2 cut(s)	326, 362
Hpy188I	TCNGA	1 cut(s)	507
Hpy99I	CGWCG	1 cut(s)	62
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4V	TGCA	6 cut(s)	97, 105, 155, 185, 211, 511
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	269
Hsp92II	CATG	5 cut(s)	128, 233, 461, 496, 515
HspAI	GCGC	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	39
Lsp1109I	GCAGC	3 cut(s)	40, 44, 52
LweI	GCATC	4 cut(s)	335, 428, 430, 498
MaeI	CTAG	3 cut(s)	117, 303, 434
MaeIII	GTNAC	2 cut(s)	14, 308
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	3 cut(s)	267, 329, 372
MfeI	CAATTG	1 cut(s)	390
MluCI	AATT	2 cut(s)	390, 480
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	2 cut(s)	230, 526
Mph1103I	ATGCAT	1 cut(s)	513
MseI	TTAA	1 cut(s)	479
MspA1I	CMGCKG	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	291
MunI	CAATTG	1 cut(s)	390
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	1 cut(s)	39
NheI	GCTAGC	1 cut(s)	116
NlaIII	CATG	5 cut(s)	128, 233, 461, 496, 515
NmuCI	GTSAC	1 cut(s)	14
NsiI	ATGCAT	1 cut(s)	513
NspI	RCATGY	2 cut(s)	128, 461
PciI	ACATGT	1 cut(s)	124
PkrI	GCNGC	4 cut(s)	34, 37, 55, 67
Ple19I	CGATCG	1 cut(s)	42
PscI	ACATGT	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	289
PspFI	CCCAGC	2 cut(s)	322, 330
PspGI	CCWGG	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	535
PvuI	CGATCG	1 cut(s)	42
RsaI	GTAC	2 cut(s)	267, 366
RsaNI	GTAC	2 cut(s)	266, 365
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	4 cut(s)	33, 36, 54, 66
Sau3AI	GATC	1 cut(s)	39
Sau96I	GGNCC	1 cut(s)	535
ScrFI	CCNGG	1 cut(s)	291
SetI	ASST	6 cut(s)	67, 114, 241, 304, 352, 523
SfaNI	GCATC	4 cut(s)	335, 428, 430, 498
SinI	GGWCC	1 cut(s)	535
Sse9I	AATT	2 cut(s)	390, 480
SsiI	CCGC	2 cut(s)	36, 163
SspMI	CTAG	3 cut(s)	117, 303, 434
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	1 cut(s)	314
TasI	AATT	2 cut(s)	390, 480
TatI	WGTACW	1 cut(s)	364
TauI	GCSGC	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	3 cut(s)	32, 53, 65
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	3 cut(s)	102, 218, 509
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	535
XceI	RCATGY	2 cut(s)	128, 461
XspI	CTAG	3 cut(s)	117, 303, 434
Zsp2I	ATGCAT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.