Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002224

Physical Location & Seq

Genomic Coordinates Reverse (-)

17125352 .. 17127379

Gene Structure 2028 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG184500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGCCATTAATATTTTTGTTCACTTTTGATGTTGCTGCATTGTTTATCTTCGGTCGCTCGAACACTCACTACAAAGAACAGCTAAAGAAAAACTATTTCACTCTAGACAAAGGTTACAATTGTTTCCCTATAAACCTACCAGGCTCTTCATACAATAAGTCGGTCTTGGCAAGGAGAAGGCTAAGCTTAATTCTCGGTGAGATAATAAAGGAGAGAAAGGAAAATAAATTGGTCGAGAAAGATCTATTGGGAAGCTTATTGAAGTTCAAGGATGAACAGGGTCAAACCTTAACACACAACCAGATCCTTGATAACATTATTGGGGTATTGTTTGCTGCTCAGGACACCACAGCTACTCTCCTGACTTGGATTCTCAAATACATGCACGATTACTCTGAACTTCTAGAAGCTATTCAGGTAGAACAGAGGGCAATTTTTGCAGCAAATGAGGGTGGAAACCAGTCGCTCAGTTGGGCTCAAACTAGAAATATGCCCCCTACCAGTAGGGCTGTAAAGGAGAGTTTGAGGATGGCAAGCATAATTTCTTTCACCTTCAGAGAAGCCGTTGAAGACGTTGAATATAAAGGATACTTGATCCGAAAGGGATGGAAGGTACTGCCTTTGTTCCGGAACATTCATCACAATCCTGATTTTTTCAATGAACCCCATAATTTCAATCCATCAAGATTTGAGCTTGGAATAAGACCCAATGCGTTCGTGCCATTTGGCAATGGAGTTCATACTTGTCCTGGAAATGAAGTTGCCAAGACTGAGATACTTATTTTCATCTACCACCTCGTTAACAAGTTCAGGTGGGAAGCAGCGGCGTCCGATGGTGGGATTCATTATGACCCATTTCCAGTACCTCACCAAGGACTTCCGGCCAAATTTTGGAAAGAGTATTCCGGCAGCCAAGGAGCGCTGTATGATAAAATAGCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010295 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

p450

Protein Analysis

314

Amino Acids

35.96

Weight (kDa)

8.85

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	3 - 274	5.2e-51	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19270 AT3G19270
fragaria_vesca	FvH4_2g06010 FvH4_2g34420
malus_domestica	MD02G1171600.v1.1 MD05G1081400.v1.1 MD08G1101400.v1.1 MD15G1082600.v1.1 MD15G1283400.v1.1
prunus_persica	Prupe.1G435300_v2.0.a1 Prupe.7G133800_v2.0.a1 Prupe.8G125800_v2.0.a1
pyrus_communis	pycom02g13830 pycom05g07510 pycom08g08190 pycom15g07740
rosa_chinensis	RchiOBHm_Chr2g0105591 RchiOBHm_Chr6g0257401 RchiOBHm_Chr6g0307951
rosa_laevigata	RLG00000010684 RLG00000014690 RLG00000017443
rosa_multiflora	Rmu_sc0000820.1_g000025 Rmu_sc0003252.1_g000022
rosa_roxburghii	Rroxscaffold_2G00138090 Rroxscaffold_7G00160740 Rroxscaffold_7G00208630
rosa_rugosa	Rorug02G0128400 Rorug02G0128500 Rorug05G0573200 Rorug06G0362000
rosa_samantha	Rh2AG180300 Rh2CG184500 Rh2DG186100 Rh6AG090500 Rh6AG471000 Rh6BG482000 Rh6CG078300 Rh6CG487400 Rh6DG074100 Rh6DG473500
rosa_wichuraiana	Rw6G007900 Rw6G041130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	891
AccIII	TCCGGA	1 cut(s)	627
AciI	CCGC	1 cut(s)	824
AclWI	GGATC	2 cut(s)	298, 589
AcoI	YGGCCR	1 cut(s)	882
AcsI	RAATTY	1 cut(s)	887
AcuI	CTGAAG	1 cut(s)	538
AcyI	GRCGYC	1 cut(s)	827
AfaI	GTAC	2 cut(s)	615, 864
AfeI	AGCGCT	1 cut(s)	921
AfiI	CCNNNNNNNGG	3 cut(s)	837, 872, 891
AgsI	TTSAA	6 cut(s)	262, 268, 569, 578, 658, 676
AjnI	CCWGG	2 cut(s)	139, 748
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AluBI	AGCT	6 cut(s)	82, 186, 255, 353, 410, 694
AluI	AGCT	6 cut(s)	82, 186, 255, 353, 410, 694
AlwI	GGATC	2 cut(s)	298, 589
Aor13HI	TCCGGA	1 cut(s)	627
Aor51HI	AGCGCT	1 cut(s)	921
AoxI	GGCC	1 cut(s)	882
ApeKI	GCWGC	5 cut(s)	35, 335, 440, 821, 909
ApoI	RAATTY	1 cut(s)	887
AseI	ATTAAT	1 cut(s)	8
Asp700I	GAANNNNTTC	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	922
AsuHPI	GGTGA	3 cut(s)	209, 541, 860
BanII	GRGCYC	1 cut(s)	478
BbsI	GAAGAC	1 cut(s)	576
BbvI	GCAGC	5 cut(s)	22, 322, 452, 833, 921
BccI	CCATC	4 cut(s)	523, 600, 688, 827
BceAI	ACGGC	1 cut(s)	548
BciT130I	CCWGG	2 cut(s)	141, 750
BciVI	GTATCC	1 cut(s)	581
BfaI	CTAG	4 cut(s)	104, 404, 483, 943
BfoI	RGCGCY	1 cut(s)	923
BfuI	GTATCC	1 cut(s)	581
BglII	AGATCT	1 cut(s)	241
BisI	GCNGC	6 cut(s)	36, 336, 441, 822, 825, 910
BlpI	GCTNAGC	1 cut(s)	182
BlsI	GCNGC	6 cut(s)	37, 337, 442, 823, 826, 911
Bme1390I	CCNGG	2 cut(s)	141, 750
BmrFI	CCNGG	2 cut(s)	141, 750
BpiI	GAAGAC	1 cut(s)	576
Bpu10I	CCTNAGC	1 cut(s)	339
Bpu1102I	GCTNAGC	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	827
BsaJI	CCNNGG	2 cut(s)	871, 913
BsaWI	WCCGGW	1 cut(s)	627
Bsc4I	CCNNNNNNNGG	3 cut(s)	837, 872, 891
Bse1I	ACTGG	3 cut(s)	460, 501, 860
Bse3DI	GCAATG	1 cut(s)	736
BseAI	TCCGGA	1 cut(s)	627
BseBI	CCWGG	2 cut(s)	141, 750
BseDI	CCNNGG	2 cut(s)	871, 913
BseGI	GGATG	3 cut(s)	277, 534, 611
BseLI	CCNNNNNNNGG	3 cut(s)	837, 872, 891
BseMI	GCAATG	1 cut(s)	736
BseMII	CTCAG	3 cut(s)	353, 481, 762
BseNI	ACTGG	3 cut(s)	460, 501, 860
BseXI	GCAGC	5 cut(s)	22, 322, 452, 833, 921
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	884
BsiEI	CGRYCG	1 cut(s)	55
BsiSI	CCGG	3 cut(s)	628, 881, 906
BslI	CCNNNNNNNGG	3 cut(s)	837, 872, 891
BsnI	GGCC	1 cut(s)	884
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp13I	TCCGGA	1 cut(s)	627
Bsp143I	GATC	3 cut(s)	241, 303, 594
Bsp1720I	GCTNAGC	1 cut(s)	182
BspACI	CCGC	1 cut(s)	824
BspANI	GGCC	1 cut(s)	884
BspCNI	CTCAG	3 cut(s)	352, 480, 763
BspEI	TCCGGA	1 cut(s)	627
BspPI	GGATC	2 cut(s)	298, 589
BspQI	GCTCTTC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	736
BsrI	ACTGG	3 cut(s)	460, 501, 860
BssECI	CCNNGG	2 cut(s)	871, 913
BssMI	GATC	3 cut(s)	241, 303, 594
BssNI	GRCGYC	1 cut(s)	827
BssT1I	CCWWGG	2 cut(s)	871, 913
Bst2UI	CCWGG	2 cut(s)	141, 750
Bst6I	CTCTTC	1 cut(s)	151
BstACI	GRCGYC	1 cut(s)	827
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstC8I	GCNNGC	1 cut(s)	535
BstDEI	CTNAG	4 cut(s)	182, 339, 467, 771
BstENI	CCTNNNNNAGG	1 cut(s)	870
BstF5I	GGATG	3 cut(s)	277, 534, 611
BstH2I	RGCGCY	1 cut(s)	923
BstHHI	GCGC	1 cut(s)	922
BstKTI	GATC	3 cut(s)	244, 306, 597
BstMBI	GATC	3 cut(s)	241, 303, 594
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNI	CCWGG	2 cut(s)	141, 750
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	2 cut(s)	139, 748
BstV1I	GCAGC	5 cut(s)	22, 322, 452, 833, 921
BstV2I	GAAGAC	1 cut(s)	576
BstX2I	RGATCY	2 cut(s)	241, 303
BstYI	RGATCY	2 cut(s)	241, 303
BsuI	GTATCC	1 cut(s)	581
BsuRI	GGCC	1 cut(s)	884
BtsCI	GGATG	3 cut(s)	277, 534, 611
Cac8I	GCNNGC	1 cut(s)	535
CfoI	GCGC	1 cut(s)	922
CseI	GACGC	1 cut(s)	816
Csp6I	GTAC	2 cut(s)	614, 863
CviAII	CATG	1 cut(s)	382
CviQI	GTAC	2 cut(s)	614, 863
DdeI	CTNAG	4 cut(s)	182, 339, 467, 771
DpnI	GATC	3 cut(s)	243, 305, 596
DpnII	GATC	3 cut(s)	241, 303, 594
EaeI	YGGCCR	1 cut(s)	882
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco130I	CCWWGG	2 cut(s)	871, 913
Eco24I	GRGCYC	1 cut(s)	478
Eco47III	AGCGCT	1 cut(s)	921
Eco57I	CTGAAG	1 cut(s)	538
EcoNI	CCTNNNNNAGG	1 cut(s)	870
EcoRII	CCWGG	2 cut(s)	139, 748
EcoT14I	CCWWGG	2 cut(s)	871, 913
EcoT38I	GRGCYC	1 cut(s)	478
ErhI	CCWWGG	2 cut(s)	871, 913
FaeI	CATG	1 cut(s)	385
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FatI	CATG	1 cut(s)	381
Fnu4HI	GCNGC	6 cut(s)	36, 336, 441, 822, 825, 910
FokI	GGATG	3 cut(s)	284, 541, 618
FriOI	GRGCYC	1 cut(s)	478
Fsp4HI	GCNGC	6 cut(s)	36, 336, 441, 822, 825, 910
FspBI	CTAG	4 cut(s)	104, 404, 483, 943
GlaI	GCGC	1 cut(s)	921
GluI	GCNGC	6 cut(s)	36, 336, 441, 822, 825, 910
HaeII	RGCGCY	1 cut(s)	923
HaeIII	GGCC	1 cut(s)	884
HapII	CCGG	3 cut(s)	628, 881, 906
HgaI	GACGC	1 cut(s)	816
HhaI	GCGC	1 cut(s)	922
Hin1I	GRCGYC	1 cut(s)	827
Hin1II	CATG	1 cut(s)	385
Hin6I	GCGC	1 cut(s)	920
HinP1I	GCGC	1 cut(s)	920
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HindIII	AAGCTT	2 cut(s)	184, 253
HinfI	GANTC	2 cut(s)	370, 841
HpaI	GTTAAC	1 cut(s)	802
HpaII	CCGG	3 cut(s)	628, 881, 906
HphI	GGTGA	3 cut(s)	209, 541, 860
Hpy166II	GTNNAC	2 cut(s)	21, 802
Hpy188I	TCNGA	4 cut(s)	397, 557, 599, 832
Hpy188III	TCNNGA	8 cut(s)	104, 235, 341, 361, 404, 628, 647, 684
Hpy8I	GTNNAC	2 cut(s)	21, 802
HpyAV	CCTTC	3 cut(s)	171, 562, 604
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	3 cut(s)	38, 385, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	4 cut(s)	182, 339, 467, 771
HpySE526I	ACGT	1 cut(s)	573
Hsp92I	GRCGYC	1 cut(s)	827
Hsp92II	CATG	1 cut(s)	385
HspAI	GCGC	1 cut(s)	920
Kpn2I	TCCGGA	1 cut(s)	627
KspAI	GTTAAC	1 cut(s)	802
Kzo9I	GATC	3 cut(s)	241, 303, 594
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	917
Lsp1109I	GCAGC	5 cut(s)	22, 322, 452, 833, 921
MaeI	CTAG	4 cut(s)	104, 404, 483, 943
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	3 cut(s)	243, 305, 596
MboI	GATC	3 cut(s)	241, 303, 594
MboII	GAAGA	3 cut(s)	40, 138, 581
MfeI	CAATTG	1 cut(s)	118
MflI	RGATCY	2 cut(s)	241, 303
MhlI	GDGCHC	1 cut(s)	478
MluCI	AATT	7 cut(s)	118, 189, 227, 432, 540, 670, 887
MnlI	CCTC	5 cut(s)	420, 442, 519, 806, 876
MroI	TCCGGA	1 cut(s)	627
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	4 cut(s)	8, 188, 290, 801
MspA1I	CMGCKG	1 cut(s)	824
MspI	CCGG	3 cut(s)	628, 881, 906
MspR9I	CCNGG	2 cut(s)	141, 750
MunI	CAATTG	1 cut(s)	118
MvaI	CCWGG	2 cut(s)	141, 750
MwoI	GCNNNNNNNGC	1 cut(s)	437
NdeII	GATC	3 cut(s)	241, 303, 594
NlaIII	CATG	1 cut(s)	385
NspI	RCATGY	1 cut(s)	385
PciSI	GCTCTTC	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	2 cut(s)	370, 841
PflMI	CCANNNNNTGG	1 cut(s)	891
PfoI	TCCNGGA	1 cut(s)	748
PkrI	GCNGC	6 cut(s)	37, 337, 442, 823, 826, 911
PshBI	ATTAAT	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	139, 748
PspGI	CCWGG	2 cut(s)	139, 748
PsrI	GAACNNNNNNTAC	2 cut(s)	53, 85
PsuI	RGATCY	2 cut(s)	241, 303
RsaI	GTAC	2 cut(s)	615, 864
RsaNI	GTAC	2 cut(s)	614, 863
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	4 cut(s)	8, 188, 290, 801
SatI	GCNGC	6 cut(s)	36, 336, 441, 822, 825, 910
Sau3AI	GATC	3 cut(s)	241, 303, 594
ScrFI	CCNGG	2 cut(s)	141, 750
SduI	GDGCHC	1 cut(s)	478
Sse9I	AATT	7 cut(s)	118, 189, 227, 432, 540, 670, 887
SsiI	CCGC	1 cut(s)	824
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	4 cut(s)	104, 404, 483, 943
StyD4I	CCNGG	2 cut(s)	139, 748
StyI	CCWWGG	2 cut(s)	871, 913
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	2 cut(s)	59, 234
TaqII	GACCGA	2 cut(s)	41, 151
TasI	AATT	7 cut(s)	118, 189, 227, 432, 540, 670, 887
TauI	GCSGC	1 cut(s)	827
TfiI	GAWTC	2 cut(s)	370, 841
Tru1I	TTAA	4 cut(s)	8, 188, 290, 801
Tru9I	TTAA	4 cut(s)	8, 188, 290, 801
TseI	GCWGC	5 cut(s)	35, 335, 440, 821, 909
TspDTI	ATGAA	8 cut(s)	138, 288, 626, 675, 728, 771, 775, 833
Van91I	CCANNNNNTGG	1 cut(s)	891
VspI	ATTAAT	1 cut(s)	8
XagI	CCTNNNNNAGG	1 cut(s)	870
XapI	RAATTY	1 cut(s)	887
XbaI	TCTAGA	2 cut(s)	103, 403
XceI	RCATGY	1 cut(s)	385
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	4 cut(s)	104, 404, 483, 943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.